FvH4_7g31551

gamma-irradiation and mitomycin c induced

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014214
Physical Location & Seq
Forward (+)
22785079 .. 22789412
4334 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31551.t1

Sequence Viewer

Length: 1299 bp
ATGTTCCAGCCCAGCAACAAAAACAAGCTTCCAATTAAGTCATTACCTGCTCAAGATCCATCAGCACCGATGCAAGTTGATAAAAAAGAAACTAGCATAGTCATGAAGGATGAAACGCAAATTGGAGGATTCGCTCAAGCAGAATCTATCATTATCTACACTAAGAGACTTCAAGATGATTTGCATGTGATGGGGATGAAAATTAAACAGCATGAGGAGAACATGAAACTTCTAAAGTCTCAGAAAAACAAATATCAAGAATCTATTCTTGATCTGCAAGTTATGTTAGGCAAGTATCATTCCTCCTCAACCACACCTGCTGCTGCAAATGATAACCATAGTCAGGAGGAAACAACTGAAAAGATTCTGCAGTGCAAGAAGTCAGCTGCAGGCATTTTATGGCAGCTGAAAGCTCGTCATAGTAATCAGGTTGCGGATCTTCCCCTGACCAAGGATGTTGTGGGTATTGTTGCTATGCTAGGCAACGTAGATGATGATATTCTTAGCAGGGTTTTGTCAGAGTACTTAGGACTGGACACTATGTTAGCAATTGTCTGCAAGACATATGATGGTGTCAAAGCTCTAGAATTGTATGACAATGAAGGTTGCATAAACCTAAATTCTGGTCTACACGGGCTTGGTGCTTCTATTGGGAGGAAATTGGAGGATCGGTTTCTGGTCATTTGCCTTGAAAACATAAGACCATATGCTGGCGAGTTTGTGCAAAATGACCCCCAAAGGAGGCTTGATATTCTAAAGCCAAGGTTGCCGAATGGGGAGTGTCCAGCTGGATTTCTTGGTTATGCTGTAAACATGATCAATGTGGATAGCACAAATTTATTTTGTCTCACAGCCAGTGGACACGGCCTGAGAGAGACTCTATTTTATAGCCTCTTTTCTCGCCTGCAAGTGTATATAACAAGAGCAGAAATGGTTCTTGCTCTTCCTTGCATAACTGATGGAGCCATTTCTTTAGATGGTGGGATGATGCGGCGGACTGGTTTGTTTTCCCTTGGCAACAGGGAAGATGTAGATGTGAAGTTTCCGAAGCTTTCAGTCACATCAGGCCTGCCTGAAAGCTATCTAGAAACACAAAGACAAATCAATGAGATGAAATGGAGAAAAGAAAAAATGGAGGAAGATTTGAAGAGAGAAGAGGCACTATGGGATAACGCAAAATTCAATTTTGACAGAAAGAAGAAAGAGTTTATCAAGTTCCTGGCTGATAGTTCATCGTATGCAACTCAGGCAACTCAGCATCAAATTATGGGGGTGCAGAATCGATTTACCTCAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

433

Amino Acids

48.62

Weight (kDa)

6.73

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49250
fragaria_vesca FvH4_7g31551
malus_domestica MD01G1218300.v1.1 MD07G1288200.v1.1
prunus_persica Prupe.2G309700_v2.0.a1
pyrus_communis pycom01g22830 pycom07g26100
rosa_chinensis RchiOBHm_Chr1g0380541
rosa_laevigata RLG00000026286
rosa_multiflora Rmu_co8407499.1_g000001 Rmu_ssc0000015.1_g000009
rosa_roxburghii Rroxscaffold_4G00279210
rosa_rugosa Rorug01G0422400
rosa_samantha Rh1AG446900 Rh1BG402200 Rh1CG416400 Rh1DG432400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 325
Acc36I ACCTGC 2 cut(s) 55, 325
AccB7I CCANNNNNTGG 1 cut(s) 710
AccI GTMKAC 1 cut(s) 628
AciI CCGC 3 cut(s) 434, 991, 994
AclWI GGATC 3 cut(s) 50, 444, 675
AcsI RAATTY 3 cut(s) 619, 835, 1178
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 4 cut(s) 343, 451, 710, 741
AgsI TTSAA 4 cut(s) 173, 692, 1147, 1183
AjnI CCWGG 1 cut(s) 1218
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 9 cut(s) 28, 386, 406, 413, 581, 788, 1051, 1080, 1296
AluI AGCT 9 cut(s) 28, 386, 406, 413, 581, 788, 1051, 1080, 1296
Alw26I GTCTC 4 cut(s) 160, 243, 851, 869
AlwI GGATC 3 cut(s) 50, 444, 675
AoxI GGCC 2 cut(s) 865, 1066
ApeKI GCWGC 4 cut(s) 320, 323, 386, 403
ApoI RAATTY 3 cut(s) 619, 835, 1178
Asp700I GAANNNNTTC 3 cut(s) 264, 363, 933
BbvI GCAGC 4 cut(s) 307, 310, 373, 415
BccI CCATC 5 cut(s) 67, 184, 563, 953, 971
BceAI ACGGC 1 cut(s) 880
BciT130I CCWGG 1 cut(s) 1220
BclI TGATCA 1 cut(s) 816
BcoDI GTCTC 4 cut(s) 160, 243, 851, 869
BfaI CTAG 4 cut(s) 93, 479, 584, 1085
BfmI CTRYAG 2 cut(s) 368, 387
BfuAI ACCTGC 2 cut(s) 55, 325
BisI GCNGC 5 cut(s) 321, 324, 387, 404, 992
BlsI GCNGC 5 cut(s) 322, 325, 388, 405, 993
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 1 cut(s) 1220
BmiI GGNNCC 1 cut(s) 964
BmrFI CCNGG 1 cut(s) 1220
BmsI GCATC 3 cut(s) 60, 978, 1267
BplI GAGNNNNNCTC 2 cut(s) 862, 894
BpuEI CTTGAG 3 cut(s) 36, 120, 1276
Bsa29I ATCGAT 1 cut(s) 1282
BsaJI CCNNGG 3 cut(s) 450, 761, 1012
BsaXI ACNNNNNCTCC 2 cut(s) 656, 686
Bsc4I CCNNNNNNNGG 4 cut(s) 343, 451, 710, 741
Bse1I ACTGG 3 cut(s) 537, 855, 1003
BseBI CCWGG 1 cut(s) 1220
BseCI ATCGAT 1 cut(s) 1282
BseDI CCNNGG 3 cut(s) 450, 761, 1012
BseGI GGATG 4 cut(s) 115, 201, 460, 990
BseLI CCNNNNNNNGG 4 cut(s) 343, 451, 710, 741
BseMII CTCAG 4 cut(s) 254, 860, 1259, 1268
BseNI ACTGG 3 cut(s) 537, 855, 1003
BseRI GAGGAG 2 cut(s) 230, 295
BseXI GCAGC 4 cut(s) 307, 310, 373, 415
BseYI CCCAGC 1 cut(s) 11
BsgI GTGCAG 1 cut(s) 1295
BshFI GGCC 2 cut(s) 867, 1068
BshVI ATCGAT 1 cut(s) 1282
BslI CCNNNNNNNGG 4 cut(s) 343, 451, 710, 741
BsmAI GTCTC 4 cut(s) 160, 243, 851, 869
BsnI GGCC 2 cut(s) 867, 1068
Bsp143I GATC 5 cut(s) 55, 271, 436, 667, 816
BspACI CCGC 3 cut(s) 434, 991, 994
BspANI GGCC 2 cut(s) 867, 1068
BspCNI CTCAG 4 cut(s) 253, 861, 1258, 1267
BspDI ATCGAT 1 cut(s) 1282
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 964
BspMAI CTGCAG 2 cut(s) 372, 391
BspMI ACCTGC 2 cut(s) 55, 325
BspPI GGATC 3 cut(s) 50, 444, 675
BspQI GCTCTTC 1 cut(s) 948
BsrI ACTGG 3 cut(s) 537, 855, 1003
BssECI CCNNGG 3 cut(s) 450, 761, 1012
BssMI GATC 5 cut(s) 55, 271, 436, 667, 816
BssT1I CCWWGG 3 cut(s) 450, 761, 1012
Bst2UI CCWGG 1 cut(s) 1220
Bst6I CTCTTC 3 cut(s) 948, 1142, 1149
BstC8I GCNNGC 4 cut(s) 391, 712, 905, 1070
BstDEI CTNAG 7 cut(s) 162, 240, 503, 526, 869, 1245, 1254
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 4 cut(s) 115, 201, 460, 990
BstKTI GATC 5 cut(s) 58, 274, 439, 670, 819
BstMAI GTCTC 4 cut(s) 160, 243, 851, 869
BstMBI GATC 5 cut(s) 55, 271, 436, 667, 816
BstMWI GCNNNNNNNGC 2 cut(s) 766, 1247
BstNI CCWGG 1 cut(s) 1220
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 1218
BstSFI CTRYAG 2 cut(s) 368, 387
BstV1I GCAGC 4 cut(s) 307, 310, 373, 415
BstX2I RGATCY 2 cut(s) 55, 436
BstYI RGATCY 2 cut(s) 55, 436
Bsu15I ATCGAT 1 cut(s) 1282
BsuRI GGCC 2 cut(s) 867, 1068
BsuTUI ATCGAT 1 cut(s) 1282
BtsCI GGATG 4 cut(s) 115, 201, 460, 990
BtsI GCAGTG 1 cut(s) 377
BtsIMutI CAGTG 2 cut(s) 377, 862
BveI ACCTGC 2 cut(s) 55, 325
Cac8I GCNNGC 4 cut(s) 391, 712, 905, 1070
CciI TCATGA 1 cut(s) 102
ClaI ATCGAT 1 cut(s) 1282
Csp6I GTAC 1 cut(s) 523
CviAII CATG 5 cut(s) 103, 185, 212, 223, 814
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 7 cut(s) 162, 240, 503, 526, 869, 1245, 1254
DpnI GATC 5 cut(s) 57, 273, 438, 669, 818
DpnII GATC 5 cut(s) 55, 271, 436, 667, 816
Eam1104I CTCTTC 3 cut(s) 948, 1142, 1149
EarI CTCTTC 3 cut(s) 948, 1142, 1149
EciI GGCGGA 1 cut(s) 1009
Eco130I CCWWGG 3 cut(s) 450, 761, 1012
Eco147I AGGCCT 1 cut(s) 1068
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 1218
EcoT14I CCWWGG 3 cut(s) 450, 761, 1012
ErhI CCWWGG 3 cut(s) 450, 761, 1012
FaeI CATG 5 cut(s) 106, 188, 215, 226, 817
FatI CATG 5 cut(s) 102, 184, 211, 222, 813
FauNDI CATATG 2 cut(s) 565, 706
FbaI TGATCA 1 cut(s) 816
FblI GTMKAC 1 cut(s) 628
Fnu4HI GCNGC 5 cut(s) 321, 324, 387, 404, 992
FokI GGATG 4 cut(s) 122, 208, 467, 997
Fsp4HI GCNGC 5 cut(s) 321, 324, 387, 404, 992
FspBI CTAG 4 cut(s) 93, 479, 584, 1085
GluI GCNGC 5 cut(s) 321, 324, 387, 404, 992
GsaI CCCAGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 867, 1068
Hin1II CATG 5 cut(s) 106, 188, 215, 226, 817
HindIII AAGCTT 2 cut(s) 26, 1049
HinfI GANTC 6 cut(s) 129, 143, 260, 364, 877, 1279
Hpy166II GTNNAC 3 cut(s) 629, 811, 860
Hpy188I TCNGA 3 cut(s) 243, 520, 1047
Hpy188III TCNNGA 8 cut(s) 53, 103, 173, 257, 269, 344, 584, 1085
Hpy8I GTNNAC 3 cut(s) 629, 811, 860
HpyAV CCTTC 2 cut(s) 100, 596
HpyCH4IV ACGT 1 cut(s) 486
HpyF10VI GCNNNNNNNGC 2 cut(s) 766, 1247
HpyF3I CTNAG 7 cut(s) 162, 240, 503, 526, 869, 1245, 1254
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 5 cut(s) 106, 188, 215, 226, 817
Ksp22I TGATCA 1 cut(s) 816
Kzo9I GATC 5 cut(s) 55, 271, 436, 667, 816
LguI GCTCTTC 1 cut(s) 948
LmnI GCTCC 1 cut(s) 962
Lsp1109I GCAGC 4 cut(s) 307, 310, 373, 415
LweI GCATC 3 cut(s) 60, 978, 1267
MaeI CTAG 4 cut(s) 93, 479, 584, 1085
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 1 cut(s) 1057
MalI GATC 5 cut(s) 57, 273, 438, 669, 818
MboI GATC 5 cut(s) 55, 271, 436, 667, 816
MboII GAAGA 7 cut(s) 431, 935, 1037, 1151, 1159, 1166, 1210
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 2 cut(s) 55, 436
MlyI GAGTC 1 cut(s) 871
MroXI GAANNNNTTC 3 cut(s) 264, 363, 933
MseI TTAA 2 cut(s) 36, 204
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 3 cut(s) 386, 406, 788
MspR9I CCNGG 1 cut(s) 1220
MunI CAATTG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 1220
MwoI GCNNNNNNNGC 2 cut(s) 766, 1247
NdeI CATATG 2 cut(s) 565, 706
NdeII GATC 5 cut(s) 55, 271, 436, 667, 816
NlaIII CATG 5 cut(s) 106, 188, 215, 226, 817
NlaIV GGNNCC 1 cut(s) 964
NmuCI GTSAC 1 cut(s) 1057
NspI RCATGY 1 cut(s) 188
PagI TCATGA 1 cut(s) 102
PaqCI CACCTGC 1 cut(s) 325
PceI AGGCCT 1 cut(s) 1068
PciSI GCTCTTC 1 cut(s) 948
PdmI GAANNNNTTC 3 cut(s) 264, 363, 933
PfeI GAWTC 5 cut(s) 129, 143, 260, 364, 1279
PflMI CCANNNNNTGG 1 cut(s) 710
PkrI GCNGC 5 cut(s) 322, 325, 388, 405, 993
PleI GAGTC 1 cut(s) 871
PpsI GAGTC 1 cut(s) 871
Psp6I CCWGG 1 cut(s) 1218
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 1 cut(s) 1218
PspN4I GGNNCC 1 cut(s) 964
PstI CTGCAG 2 cut(s) 372, 391
PsuI RGATCY 2 cut(s) 55, 436
PvuII CAGCTG 3 cut(s) 386, 406, 788
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
RseI CAYNNNNRTG 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 948
SaqAI TTAA 2 cut(s) 36, 204
SatI GCNGC 5 cut(s) 321, 324, 387, 404, 992
Sau3AI GATC 5 cut(s) 55, 271, 436, 667, 816
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 1 cut(s) 871
ScrFI CCNGG 1 cut(s) 1220
SfaNI GCATC 3 cut(s) 60, 978, 1267
SfcI CTRYAG 2 cut(s) 368, 387
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 3 cut(s) 51, 135, 1291
SmoI CTYRAG 3 cut(s) 51, 135, 1291
SseBI AGGCCT 1 cut(s) 1068
SsiI CCGC 3 cut(s) 434, 991, 994
SspMI CTAG 4 cut(s) 93, 479, 584, 1085
StuI AGGCCT 1 cut(s) 1068
StyD4I CCNGG 1 cut(s) 1218
StyI CCWWGG 3 cut(s) 450, 761, 1012
TaiI ACGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 1282
TatI WGTACW 1 cut(s) 522
TauI GCSGC 1 cut(s) 994
TfiI GAWTC 5 cut(s) 129, 143, 260, 364, 1279
Tru1I TTAA 2 cut(s) 36, 204
Tru9I TTAA 2 cut(s) 36, 204
TscAI CASTG 2 cut(s) 377, 862
TseFI GTSAC 1 cut(s) 1057
TseI GCWGC 4 cut(s) 320, 323, 386, 403
Tsp45I GTSAC 1 cut(s) 1057
TspDTI ATGAA 7 cut(s) 119, 126, 212, 239, 615, 1127, 1221
TspRI CASTG 2 cut(s) 377, 862
Van91I CCANNNNNTGG 1 cut(s) 710
XagI CCTNNNNNAGG 1 cut(s) 449
XapI RAATTY 3 cut(s) 619, 835, 1178
XbaI TCTAGA 2 cut(s) 583, 1084
XceI RCATGY 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 628
XmnI GAANNNNTTC 3 cut(s) 264, 363, 933
XspI CTAG 4 cut(s) 93, 479, 584, 1085
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.