Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014214

Physical Location & Seq

Genomic Coordinates Forward (+)

20301037 .. 20302976

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22830.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGTACTCAGGCTGCCCTTCTTTCCCCGATCGATCAAGGATGTCGTGGGTATTGTCGGTATGCTTGGCAAAGTAGAGGATGATAATCTTAGCAGGATTTTTTCAGAGTACTTAGGGATCGAGACTATGTTGGCAATTGTCTGTAAGACTTATGAGGGTGTTAAAGCTCTAGAAGTGTATGAGAATGAAGGCTGCATAAAGAAATCTGCTGGTCTTCATGGACTTGGTTCATCCATTGGTAGGACATTGGAAGGCCAATTTCAGGTCATTTGTCTTGAAAATTTAAGACCATATGCTGGTGCATCTGTGCCCGATGACCCACAGATGAGGCTTGATATTATAAAGCCTAGGTTAGCCAATGGGGAGTGTCCACCTGGATTTCTTGGTTATGCTGTAAATATGATTAATGTGGATAGCGCTAACTTATATTGTCTCACAGCCACTGGATGTGGCCTAAGAGCGACTTTATTTTATAGCCTCTTTGGTCGCTTGCAAGTATATAAAACAAGGGCAGATATGGTTCCTGCTCTTCCTTGTATTAGTGATGGAGCCATTTCTTTAGATGGCGGGATGATTAGGTCAACTGGTGTGTTTTCTCTTGGCAACCGGGAAGATGTAGATGTGAGATTCCCCAAACTGTCAGCAACATCAGGCCTACCCGAAAACTATCTCGAGTCTGAAAGACAAATCAACGAGTTGAAGTGGAAAAAAGACAAACTGCAGGAAGATATGAAGAGTGAACAATCATTATTGGACAATGCAAAGTTCAATTTTGACAGAAAGAAGCAAGATTTTCTCAAGTTCCTGGCTGATAGCTCATCATATGTAACGCAGCATCAACTTTATGCACCGCAAAGCAGAATGACCCCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0010964 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030880 GO:0031047 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032991 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0060966 GO:0060968 GO:0061695 GO:0065007 GO:0070920 GO:0070921 GO:0071704 GO:0080090 GO:0080188 GO:0090304 GO:1901360 GO:1902275 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

32.39

Weight (kDa)

6.75

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49250
fragaria_vesca	FvH4_7g31551
malus_domestica	MD01G1218300.v1.1 MD07G1288200.v1.1
prunus_persica	Prupe.2G309700_v2.0.a1
pyrus_communis	pycom01g22830 pycom07g26100
rosa_chinensis	RchiOBHm_Chr1g0380541
rosa_laevigata	RLG00000026286
rosa_multiflora	Rmu_co8407499.1_g000001 Rmu_ssc0000015.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279210
rosa_rugosa	Rorug01G0422400
rosa_samantha	Rh1AG446900 Rh1BG402200 Rh1CG416400 Rh1DG432400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	296
AciI	CCGC	2 cut(s)	567, 851
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	280
AfaI	GTAC	2 cut(s)	6, 110
AfeI	AGCGCT	1 cut(s)	418
AfiI	CCNNNNNNNGG	3 cut(s)	240, 262, 296
AgsI	TTSAA	3 cut(s)	278, 700, 769
AjnI	CCWGG	2 cut(s)	373, 804
AluBI	AGCT	2 cut(s)	167, 816
AluI	AGCT	2 cut(s)	167, 816
Alw26I	GTCTC	2 cut(s)	116, 437
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	2 cut(s)	671, 868
Aor51HI	AGCGCT	1 cut(s)	418
AoxI	GGCC	3 cut(s)	253, 451, 652
ApeKI	GCWGC	3 cut(s)	13, 192, 832
ApoI	RAATTY	1 cut(s)	280
AseI	ATTAAT	1 cut(s)	405
AspA2I	CCTAGG	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	419
AsuC2I	CCSGG	1 cut(s)	608
AvaI	CYCGRG	2 cut(s)	671, 868
AvrII	CCTAGG	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	179, 844
BccI	CCATC	2 cut(s)	539, 557
BciT130I	CCWGG	2 cut(s)	375, 806
BcnI	CCSGG	1 cut(s)	608
BcoDI	GTCTC	2 cut(s)	116, 437
BfaI	CTAG	2 cut(s)	170, 348
BfmI	CTRYAG	1 cut(s)	719
BfoI	RGCGCY	1 cut(s)	420
BisI	GCNGC	3 cut(s)	14, 193, 833
BlnI	CCTAGG	1 cut(s)	347
BlsI	GCNGC	3 cut(s)	15, 194, 834
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	3 cut(s)	375, 608, 806
BmeT110I	CYCGRG	2 cut(s)	671, 868
BmiI	GGNNCC	2 cut(s)	522, 550
BmrFI	CCNGG	3 cut(s)	375, 608, 806
BmsI	GCATC	2 cut(s)	311, 844
BpiI	GAAGAC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	608
Bsa29I	ATCGAT	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	347, 869
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 262, 296
Bse1I	ACTGG	2 cut(s)	448, 589
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	375, 806
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	347, 869
BseGI	GGATG	5 cut(s)	46, 85, 230, 452, 576
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	240, 262, 296
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	2 cut(s)	448, 589
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	179, 844
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	255, 453, 654
BshVI	ATCGAT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	32
BsiHKCI	CYCGRG	2 cut(s)	671, 868
BsiSI	CCGG	1 cut(s)	607
BslI	CCNNNNNNNGG	3 cut(s)	240, 262, 296
BsmAI	GTCTC	2 cut(s)	116, 437
BsnI	GGCC	3 cut(s)	255, 453, 654
BsoBI	CYCGRG	2 cut(s)	671, 868
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	3 cut(s)	29, 33, 117
BspACI	CCGC	2 cut(s)	567, 851
BspANI	GGCC	3 cut(s)	255, 453, 654
BspCNI	CTCAG	1 cut(s)	21
BspDI	ATCGAT	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	522, 550
BspMAI	CTGCAG	1 cut(s)	723
BspPI	GGATC	1 cut(s)	125
BspQI	GCTCTTC	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	448, 589
BssECI	CCNNGG	2 cut(s)	347, 869
BssMI	GATC	3 cut(s)	29, 33, 117
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	2 cut(s)	375, 806
Bst4CI	ACNGT	1 cut(s)	639
Bst6I	CTCTTC	2 cut(s)	534, 728
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	4 cut(s)	8, 89, 112, 455
BstF5I	GGATG	5 cut(s)	46, 85, 230, 452, 576
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	3 cut(s)	32, 36, 120
BstMAI	GTCTC	2 cut(s)	116, 437
BstMBI	GATC	3 cut(s)	29, 33, 117
BstMCI	CGRYCG	1 cut(s)	32
BstNI	CCWGG	2 cut(s)	375, 806
BstSCI	CCNGG	3 cut(s)	373, 606, 804
BstSFI	CTRYAG	1 cut(s)	719
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	179, 844
BstV2I	GAAGAC	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	3 cut(s)	255, 453, 654
BsuTUI	ATCGAT	1 cut(s)	32
BtsCI	GGATG	5 cut(s)	46, 85, 230, 452, 576
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	419
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	5, 109
CviAII	CATG	1 cut(s)	218
CviQI	GTAC	2 cut(s)	5, 109
DdeI	CTNAG	4 cut(s)	8, 89, 112, 455
DpnI	GATC	3 cut(s)	31, 35, 119
DpnII	GATC	3 cut(s)	29, 33, 117
Eam1104I	CTCTTC	2 cut(s)	534, 728
EarI	CTCTTC	2 cut(s)	534, 728
Eco130I	CCWWGG	1 cut(s)	347
Eco147I	AGGCCT	1 cut(s)	654
Eco47III	AGCGCT	1 cut(s)	418
Eco88I	CYCGRG	2 cut(s)	671, 868
EcoRII	CCWGG	2 cut(s)	373, 804
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	1 cut(s)	221
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FatI	CATG	1 cut(s)	217
FauI	CCCGC	1 cut(s)	560
FauNDI	CATATG	2 cut(s)	292, 823
Fnu4HI	GCNGC	3 cut(s)	14, 193, 833
FokI	GGATG	5 cut(s)	53, 92, 217, 459, 583
Fsp4HI	GCNGC	3 cut(s)	14, 193, 833
FspBI	CTAG	2 cut(s)	170, 348
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	3 cut(s)	14, 193, 833
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	3 cut(s)	255, 453, 654
HapII	CCGG	1 cut(s)	607
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HinfI	GANTC	2 cut(s)	627, 674
HpaII	CCGG	1 cut(s)	607
Hpy166II	GTNNAC	3 cut(s)	371, 582, 740
Hpy188I	TCNGA	2 cut(s)	106, 679
Hpy188III	TCNNGA	4 cut(s)	121, 170, 275, 671
Hpy8I	GTNNAC	3 cut(s)	371, 582, 740
HpyAV	CCTTC	3 cut(s)	28, 182, 245
HpyCH4III	ACNGT	1 cut(s)	639
HpyCH4V	TGCA	6 cut(s)	195, 302, 493, 721, 761, 848
HpyF3I	CTNAG	4 cut(s)	8, 89, 112, 455
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	29, 33, 117
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	548
Lsp1109I	GCAGC	2 cut(s)	179, 844
LweI	GCATC	2 cut(s)	311, 844
MaeI	CTAG	2 cut(s)	170, 348
MaeIII	GTNAC	1 cut(s)	826
MalI	GATC	3 cut(s)	31, 35, 119
MboI	GATC	3 cut(s)	29, 33, 117
MboII	GAAGA	5 cut(s)	206, 521, 623, 737, 745
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	4 cut(s)	135, 257, 280, 769
MlyI	GAGTC	1 cut(s)	683
MnlI	CCTC	5 cut(s)	70, 148, 321, 488, 864
MseI	TTAA	3 cut(s)	162, 284, 405
MspI	CCGG	1 cut(s)	607
MspR9I	CCNGG	3 cut(s)	375, 608, 806
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	375, 806
NciI	CCSGG	1 cut(s)	608
NdeI	CATATG	2 cut(s)	292, 823
NdeII	GATC	3 cut(s)	29, 33, 117
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	2 cut(s)	522, 550
PaeR7I	CTCGAG	1 cut(s)	671
PceI	AGGCCT	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	627
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	15, 194, 834
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
PshBI	ATTAAT	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	373, 804
PspGI	CCWGG	2 cut(s)	373, 804
PspN4I	GGNNCC	2 cut(s)	522, 550
PstI	CTGCAG	1 cut(s)	723
PstNI	CAGNNNCTG	1 cut(s)	443
PvuI	CGATCG	1 cut(s)	32
RsaI	GTAC	2 cut(s)	6, 110
RsaNI	GTAC	2 cut(s)	5, 109
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	162, 284, 405
SatI	GCNGC	3 cut(s)	14, 193, 833
Sau3AI	GATC	3 cut(s)	29, 33, 117
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	3 cut(s)	375, 608, 806
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	7 cut(s)	169, 267, 353, 376, 581, 818, 875
SfaNI	GCATC	2 cut(s)	311, 844
SfcI	CTRYAG	1 cut(s)	719
Sfr274I	CTCGAG	1 cut(s)	671
SlaI	CTCGAG	1 cut(s)	671
SmlI	CTYRAG	2 cut(s)	671, 797
SmoI	CTYRAG	2 cut(s)	671, 797
Sse9I	AATT	4 cut(s)	135, 257, 280, 769
SseBI	AGGCCT	1 cut(s)	654
SsiI	CCGC	2 cut(s)	567, 851
SspMI	CTAG	2 cut(s)	170, 348
StuI	AGGCCT	1 cut(s)	654
StyD4I	CCNGG	3 cut(s)	373, 606, 804
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	639
TaqI	TCGA	3 cut(s)	32, 120, 672
TasI	AATT	4 cut(s)	135, 257, 280, 769
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	627
Tru1I	TTAA	3 cut(s)	162, 284, 405
Tru9I	TTAA	3 cut(s)	162, 284, 405
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	3 cut(s)	13, 192, 832
TspDTI	ATGAA	4 cut(s)	201, 206, 219, 746
TspRI	CASTG	1 cut(s)	448
Van91I	CCANNNNNTGG	1 cut(s)	296
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	1 cut(s)	280
XbaI	TCTAGA	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	671
XmaJI	CCTAGG	1 cut(s)	347
XspI	CTAG	2 cut(s)	170, 348
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.