Rmu_co8407499.1_g000001

gamma-irradiation and mitomycin c induced

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8407499.1
OG0014214
Physical Location & Seq
Forward (+)
262 .. 1215
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8407499.1_g000001.1.cds

Sequence Viewer

Length: 750 bp
atgttagcaattgtctgcaagacttatgatggtgtcagagctctagaattgtatgacaacgaaggttgcataaacctgaattccggtcttcacgggcttggtacttctattgggaggaaattggaaggtcggtttctggtcatttgtcttgaaaatttaagaccatatgctggtgagtttgtacataatgacccccaacggaggcttgatattctaaaaccaaggttgctgaatggggagtgtccacctggatttcttggctatgctgtaaatatgatcaatgtggatagcacaaatttattttgtctcacagccagtggacacggcctgagagagactctactttatagcctcttttctcgcttgcaagtgtataaaacaagagcagatatggtatctgctcttccttgtataactgatggagccatttctttagatggtgggatgattcagaggactggtgtgttttcccttggcaacagggaagacgtaggtgtgaagtttccaaagctctcagtggcatcaggccttcccgaaagctatctagaaacagaaagacaaatcaatgagtcgaaatggagaaaagaaaaattgattgaagatacgaagagagtacaggcattatgggacaatgcaaaattcaattttgatagaaagaaaaaagagttcctcaagttcctggctgatagttcatcttatgcaactcaggcaactcaggtaacacctgtgacatatcttaattcacagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

249

Amino Acids

27.88

Weight (kDa)

8.47

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49250
fragaria_vesca FvH4_7g31551
malus_domestica MD01G1218300.v1.1 MD07G1288200.v1.1
prunus_persica Prupe.2G309700_v2.0.a1
pyrus_communis pycom01g22830 pycom07g26100
rosa_chinensis RchiOBHm_Chr1g0380541
rosa_laevigata RLG00000026286
rosa_multiflora Rmu_co8407499.1_g000001 Rmu_ssc0000015.1_g000009
rosa_roxburghii Rroxscaffold_4G00279210
rosa_rugosa Rorug01G0422400
rosa_samantha Rh1AG446900 Rh1BG402200 Rh1CG416400 Rh1DG432400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 170
AcsI RAATTY 4 cut(s) 79, 154, 295, 638
AfaI GTAC 3 cut(s) 103, 183, 615
AfiI CCNNNNNNNGG 2 cut(s) 170, 201
AgsI TTSAA 3 cut(s) 152, 599, 643
AjnI CCWGG 2 cut(s) 247, 678
AluBI AGCT 3 cut(s) 41, 511, 540
AluI AGCT 3 cut(s) 41, 511, 540
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 2 cut(s) 311, 329
AoxI GGCC 2 cut(s) 325, 526
ApoI RAATTY 4 cut(s) 79, 154, 295, 638
AsuHPI GGTGA 1 cut(s) 185
BanII GRGCYC 1 cut(s) 43
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
BbsI GAAGAC 2 cut(s) 80, 492
Bbv12I GWGCWC 1 cut(s) 43
BccI CCATC 3 cut(s) 23, 413, 431
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 2 cut(s) 249, 680
BclI TGATCA 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 311, 329
BfaI CTAG 2 cut(s) 44, 545
Bme1390I CCNGG 2 cut(s) 249, 680
BmiI GGNNCC 1 cut(s) 424
BmrFI CCNGG 2 cut(s) 249, 680
BmsI GCATC 1 cut(s) 530
BpiI GAAGAC 2 cut(s) 80, 492
BplI GAGNNNNNCTC 2 cut(s) 322, 354
BpuEI CTTGAG 1 cut(s) 656
BsaJI CCNNGG 2 cut(s) 221, 472
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 201
Bse1I ACTGG 2 cut(s) 315, 463
BseBI CCWGG 2 cut(s) 249, 680
BseDI CCNNGG 2 cut(s) 221, 472
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 2 cut(s) 170, 201
BseMII CTCAG 4 cut(s) 320, 528, 719, 728
BseNI ACTGG 2 cut(s) 315, 463
BshFI GGCC 2 cut(s) 327, 528
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 2 cut(s) 170, 201
BsmAI GTCTC 2 cut(s) 311, 329
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 2 cut(s) 327, 528
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 181
Bsp143I GATC 1 cut(s) 276
BspANI GGCC 2 cut(s) 327, 528
BspCNI CTCAG 4 cut(s) 321, 527, 718, 727
BspLI GGNNCC 1 cut(s) 424
BspQI GCTCTTC 1 cut(s) 408
BsrGI TGTACA 1 cut(s) 181
BsrI ACTGG 2 cut(s) 315, 463
BssECI CCNNGG 2 cut(s) 221, 472
BssMI GATC 1 cut(s) 276
BssT1I CCWWGG 2 cut(s) 221, 472
Bst2UI CCWGG 2 cut(s) 249, 680
Bst4CI ACNGT 1 cut(s) 747
Bst6I CTCTTC 2 cut(s) 408, 602
BstAUI TGTACA 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 4 cut(s) 329, 514, 705, 714
BstF5I GGATG 1 cut(s) 450
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 2 cut(s) 311, 329
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 1 cut(s) 707
BstNI CCWGG 2 cut(s) 249, 680
BstSCI CCNGG 2 cut(s) 247, 678
BstV2I GAAGAC 2 cut(s) 80, 492
BsuRI GGCC 2 cut(s) 327, 528
BtsCI GGATG 1 cut(s) 450
BtsIMutI CAGTG 2 cut(s) 322, 522
Cac8I GCNNGC 1 cut(s) 365
Csp6I GTAC 3 cut(s) 102, 182, 614
CviQI GTAC 3 cut(s) 102, 182, 614
DdeI CTNAG 4 cut(s) 329, 514, 705, 714
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 408, 602
EarI CTCTTC 2 cut(s) 408, 602
Ecl136II GAGCTC 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 221, 472
Eco147I AGGCCT 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 41
EcoICRI GAGCTC 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 247, 678
EcoT14I CCWWGG 2 cut(s) 221, 472
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 2 cut(s) 221, 472
FaqI GGGAC 1 cut(s) 641
FauNDI CATATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 276
FokI GGATG 1 cut(s) 457
FriOI GRGCYC 1 cut(s) 43
FspBI CTAG 2 cut(s) 44, 545
HaeIII GGCC 2 cut(s) 327, 528
HapII CCGG 1 cut(s) 84
HinfI GANTC 3 cut(s) 337, 448, 569
HpaII CCGG 1 cut(s) 84
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 245, 320
Hpy188I TCNGA 2 cut(s) 38, 453
Hpy188III TCNNGA 4 cut(s) 44, 149, 533, 545
Hpy8I GTNNAC 2 cut(s) 245, 320
HpyAV CCTTC 3 cut(s) 56, 119, 539
HpyCH4III ACNGT 1 cut(s) 747
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 5 cut(s) 18, 69, 367, 635, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 707
HpyF3I CTNAG 4 cut(s) 329, 514, 705, 714
HpySE526I ACGT 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 1 cut(s) 276
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 1 cut(s) 422
LweI GCATC 1 cut(s) 530
MaeI CTAG 2 cut(s) 44, 545
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 718, 727
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 5 cut(s) 80, 395, 497, 611, 619
MfeI CAATTG 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 43
MlyI GAGTC 2 cut(s) 331, 578
MnlI CCTC 5 cut(s) 108, 195, 362, 447, 680
MseI TTAA 2 cut(s) 158, 738
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 2 cut(s) 249, 680
MunI CAATTG 1 cut(s) 9
MvaI CCWGG 2 cut(s) 249, 680
MwoI GCNNNNNNNGC 1 cut(s) 707
NdeI CATATG 1 cut(s) 166
NdeII GATC 1 cut(s) 276
NlaIV GGNNCC 1 cut(s) 424
NmuCI GTSAC 1 cut(s) 727
PceI AGGCCT 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 448
PflMI CCANNNNNTGG 1 cut(s) 170
PleI GAGTC 2 cut(s) 331, 577
PpsI GAGTC 2 cut(s) 331, 577
Psp124BI GAGCTC 1 cut(s) 43
Psp6I CCWGG 2 cut(s) 247, 678
PspGI CCWGG 2 cut(s) 247, 678
PspN4I GGNNCC 1 cut(s) 424
RsaI GTAC 3 cut(s) 103, 183, 615
RsaNI GTAC 3 cut(s) 102, 182, 614
SacI GAGCTC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 2 cut(s) 158, 738
Sau3AI GATC 1 cut(s) 276
SchI GAGTC 2 cut(s) 331, 578
ScrFI CCNGG 2 cut(s) 249, 680
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SseBI AGGCCT 1 cut(s) 528
SspMI CTAG 2 cut(s) 44, 545
SstI GAGCTC 1 cut(s) 43
StuI AGGCCT 1 cut(s) 528
StyD4I CCNGG 2 cut(s) 247, 678
StyI CCWWGG 2 cut(s) 221, 472
TaaI ACNGT 1 cut(s) 747
TaiI ACGT 1 cut(s) 492
TaqI TCGA 1 cut(s) 572
TatI WGTACW 2 cut(s) 181, 613
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 2 cut(s) 158, 738
Tru9I TTAA 2 cut(s) 158, 738
TscAI CASTG 2 cut(s) 322, 522
TseFI GTSAC 1 cut(s) 727
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 1 cut(s) 681
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 2 cut(s) 322, 522
Van91I CCANNNNNTGG 1 cut(s) 170
XapI RAATTY 4 cut(s) 79, 154, 295, 638
XbaI TCTAGA 2 cut(s) 43, 544
XspI CTAG 2 cut(s) 44, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.