Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0014214

Physical Location & Seq

Genomic Coordinates Forward (+)

31062447 .. 31067046

Gene Structure 4600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1218300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGTTCCAACCCAGCAACCAGGTTCCAGGTCAGCCGACGCCATTGTCTGTTCAAGATCCTGCAGCTTTGATGCAAGTAGATAAAAAAGAAACTAGTGTGGTTGTGCAGGATGAAGTCAAAACTGGAGGCTTCTCGCAAGCAGAATCCATCATCTATTACACTAAGAAACTTCAAGACGATTTACAAATGATGGGAATGAAAATTAAACAACATGAGGACAACATAAAACTGCTGAAGTCTCAGAAGCACAAACTAGATGACTCTATTCTCGATTTGCAAGTTATTCTAGGCAAGTATCACACCTCAACCACTCCTAAAATCGAAGATGATGGCCATTCCTGCCGTAAAAGTGAGGAGGAAACTACTGAAAAGATTCTTCAGCATGAGAAGTCTGCCGCAGGCATTTTATGGCAGTTGAAAACTCGTCATGGTACTCAGGCTGCCCTTCTTTCCCCGATCAAGGATGTCGTGGGTATTGTTGGTATGCTTGGCAAAGTAGAGGATGATAATCTTAGCAGGATTTTTTCAGAGTACTTAGGGATCGAGACTATGTTGGCAATTGTCTGTAAAACTTATGAGGGTGTTAAAGCTCTAGAAGTGTATGAGAATGAAGGCTGCATAAAGAAATCTGCTGGTCTTCATGGACTTGGTTCATCCATTGGTAGGACATTGGACAGCCGATTTCAGGTCATTTGTCTTGAAAATTTAAGACCATATGCTGGTGCATCTGTGCCCAATGACCCACAGATGAGGCTTGATATTATAAAGCCTAGGTTAGCCAATGGGGAGTGTCCACCTGGATTTCTTGGTTATGCTGTAAATATGATTAATGTGGATAGCGCTAACTTATATTGTCTCACAGCCACTGGGCATGGACTAAGAGCGACTTTATTTTATAGCCTCTTTGGTCACTTGCAAGTATATAAAACAAGGGCAGATATGGTTCCTGCTCTTCCTTGTATTAGTGATGGAGCCATTTCTTTAGATGGCGGGATGATTAGGTCAACTGGTGTGTTTTCTCTTGGCAACCGGGAAGATGTAGATGTGAGATTCCCCATACTGTCAGCAACATCAGGCCTACCCGAAAACTATTTCGAGTCTGAAAGACAAATCAATGAGTTGAAGCGGAAAAAAGACAAACTGCAGGAAGATATGAAGAGTGAACAATCATTATTGGACAACGCAAAGTTCAATTTTGACAGAAAGAAGCAAGATTTTCTCAAGTTCCTGGCGGATAGCTCATCATATGTAACTCAGCATCAACTTTATGCACCGCAAGGCAGAATGACCCCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0010964 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030880 GO:0031047 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032991 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0060966 GO:0060968 GO:0061695 GO:0065007 GO:0070920 GO:0070921 GO:0071704 GO:0080090 GO:0080188 GO:0090304 GO:1901360 GO:1902275 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

433

Amino Acids

48.11

Weight (kDa)

6.39

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49250
fragaria_vesca	FvH4_7g31551
malus_domestica	MD01G1218300.v1.1 MD07G1288200.v1.1
prunus_persica	Prupe.2G309700_v2.0.a1
pyrus_communis	pycom01g22830 pycom07g26100
rosa_chinensis	RchiOBHm_Chr1g0380541
rosa_laevigata	RLG00000026286
rosa_multiflora	Rmu_co8407499.1_g000001 Rmu_ssc0000015.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279210
rosa_rugosa	Rorug01G0422400
rosa_samantha	Rh1AG446900 Rh1BG402200 Rh1CG416400 Rh1DG432400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	764
AasI	GACNNNNNNGTC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	719
AciI	CCGC	5 cut(s)	396, 990, 1126, 1232, 1274
AclWI	GGATC	2 cut(s)	50, 548
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	2 cut(s)	254, 362
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	433, 533
AfeI	AGCGCT	1 cut(s)	841
AfiI	CCNNNNNNNGG	4 cut(s)	460, 663, 685, 719
AgsI	TTSAA	6 cut(s)	53, 173, 418, 701, 1123, 1192
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	4 cut(s)	18, 25, 796, 1227
AluBI	AGCT	3 cut(s)	65, 590, 1239
AluI	AGCT	3 cut(s)	65, 590, 1239
Alw26I	GTCTC	3 cut(s)	243, 539, 860
AlwI	GGATC	2 cut(s)	50, 548
AlwNI	CAGNNNCTG	1 cut(s)	866
Ama87I	CYCGRG	1 cut(s)	1291
Aor51HI	AGCGCT	1 cut(s)	841
AoxI	GGCC	2 cut(s)	331, 1075
ApeKI	GCWGC	3 cut(s)	62, 440, 615
ApoI	RAATTY	1 cut(s)	703
AseI	ATTAAT	1 cut(s)	828
Asp700I	GAANNNNTTC	1 cut(s)	372
AspA2I	CCTAGG	1 cut(s)	770
AspLEI	GCGC	1 cut(s)	842
AsuC2I	CCSGG	1 cut(s)	1031
AvaI	CYCGRG	1 cut(s)	1291
AvrII	CCTAGG	1 cut(s)	770
BaeGI	GKGCMC	1 cut(s)	735
BalI	TGGCCA	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	629
BbvI	GCAGC	3 cut(s)	74, 427, 602
BccI	CCATC	5 cut(s)	155, 184, 323, 962, 980
BceAI	ACGGC	1 cut(s)	327
BciT130I	CCWGG	4 cut(s)	20, 27, 798, 1229
BcnI	CCSGG	1 cut(s)	1031
BcoDI	GTCTC	3 cut(s)	243, 539, 860
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	5 cut(s)	93, 254, 287, 593, 771
BfmI	CTRYAG	2 cut(s)	60, 1142
BfoI	RGCGCY	1 cut(s)	843
BisI	GCNGC	4 cut(s)	63, 396, 441, 616
BlnI	CCTAGG	1 cut(s)	770
BlsI	GCNGC	4 cut(s)	64, 397, 442, 617
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	5 cut(s)	20, 27, 798, 1031, 1229
BmeT110I	CYCGRG	1 cut(s)	1291
BmiI	GGNNCC	3 cut(s)	24, 945, 973
BmrFI	CCNGG	5 cut(s)	20, 27, 798, 1031, 1229
BmrI	ACTGGG	1 cut(s)	876
BmsI	GCATC	3 cut(s)	60, 734, 1267
BmuI	ACTGGG	1 cut(s)	876
BpiI	GAAGAC	1 cut(s)	629
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	1205
BpuMI	CCSGG	1 cut(s)	1031
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	770, 1292
Bsc4I	CCNNNNNNNGG	4 cut(s)	460, 663, 685, 719
Bse1I	ACTGG	3 cut(s)	127, 871, 1012
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	4 cut(s)	20, 27, 798, 1229
BseDI	CCNNGG	2 cut(s)	770, 1292
BseGI	GGATG	5 cut(s)	115, 469, 508, 653, 999
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	4 cut(s)	460, 663, 685, 719
BseMII	CTCAG	3 cut(s)	254, 449, 1268
BseNI	ACTGG	3 cut(s)	127, 871, 1012
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	735
BseXI	GCAGC	3 cut(s)	74, 427, 602
BseYI	CCCAGC	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	333, 1077
BsiHKCI	CYCGRG	1 cut(s)	1291
BsiSI	CCGG	1 cut(s)	1030
BslI	CCNNNNNNNGG	4 cut(s)	460, 663, 685, 719
BsmAI	GTCTC	3 cut(s)	243, 539, 860
BsnI	GGCC	2 cut(s)	333, 1077
BsoBI	CYCGRG	1 cut(s)	1291
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	3 cut(s)	55, 456, 540
BspACI	CCGC	5 cut(s)	396, 990, 1126, 1232, 1274
BspANI	GGCC	2 cut(s)	333, 1077
BspCNI	CTCAG	3 cut(s)	253, 448, 1267
BspLI	GGNNCC	3 cut(s)	24, 945, 973
BspMAI	CTGCAG	2 cut(s)	64, 1146
BspPI	GGATC	2 cut(s)	50, 548
BspQI	GCTCTTC	1 cut(s)	957
BsrI	ACTGG	3 cut(s)	127, 871, 1012
BssECI	CCNNGG	2 cut(s)	770, 1292
BssMI	GATC	3 cut(s)	55, 456, 540
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	770
Bst2UI	CCWGG	4 cut(s)	20, 27, 798, 1229
Bst4CI	ACNGT	1 cut(s)	1062
Bst6I	CTCTTC	2 cut(s)	957, 1151
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	138, 400
BstDEI	CTNAG	7 cut(s)	162, 240, 435, 512, 535, 878, 1254
BstF5I	GGATG	5 cut(s)	115, 469, 508, 653, 999
BstH2I	RGCGCY	1 cut(s)	843
BstHHI	GCGC	1 cut(s)	842
BstKTI	GATC	3 cut(s)	58, 459, 543
BstMAI	GTCTC	3 cut(s)	243, 539, 860
BstMBI	GATC	3 cut(s)	55, 456, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	4 cut(s)	20, 27, 798, 1229
BstSCI	CCNGG	5 cut(s)	18, 25, 796, 1029, 1227
BstSFI	CTRYAG	2 cut(s)	60, 1142
BstSLI	GKGCMC	1 cut(s)	735
BstV1I	GCAGC	3 cut(s)	74, 427, 602
BstV2I	GAAGAC	1 cut(s)	629
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	333, 1077
BtsCI	GGATG	5 cut(s)	115, 469, 508, 653, 999
BtsIMutI	CAGTG	1 cut(s)	864
Cac8I	GCNNGC	2 cut(s)	138, 400
CaiI	CAGNNNCTG	1 cut(s)	866
CfoI	GCGC	1 cut(s)	842
CseI	GACGC	1 cut(s)	46
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	432, 532
CviAII	CATG	5 cut(s)	212, 383, 428, 641, 872
CviQI	GTAC	2 cut(s)	432, 532
DdeI	CTNAG	7 cut(s)	162, 240, 435, 512, 535, 878, 1254
DpnI	GATC	3 cut(s)	57, 458, 542
DpnII	GATC	3 cut(s)	55, 456, 540
DrdI	GACNNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	957, 1151
EarI	CTCTTC	2 cut(s)	957, 1151
EciI	GGCGGA	1 cut(s)	1247
Eco130I	CCWWGG	1 cut(s)	770
Eco147I	AGGCCT	1 cut(s)	1077
Eco47III	AGCGCT	1 cut(s)	841
Eco57I	CTGAAG	2 cut(s)	254, 362
Eco88I	CYCGRG	1 cut(s)	1291
EcoRII	CCWGG	4 cut(s)	18, 25, 796, 1227
EcoT14I	CCWWGG	1 cut(s)	770
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	5 cut(s)	215, 386, 431, 644, 875
FalI	AAGNNNNNCTT	2 cut(s)	871, 903
FatI	CATG	5 cut(s)	211, 382, 427, 640, 871
FauI	CCCGC	1 cut(s)	983
FauNDI	CATATG	2 cut(s)	715, 1246
Fnu4HI	GCNGC	4 cut(s)	63, 396, 441, 616
FokI	GGATG	5 cut(s)	122, 476, 515, 640, 1006
Fsp4HI	GCNGC	4 cut(s)	63, 396, 441, 616
FspBI	CTAG	5 cut(s)	93, 254, 287, 593, 771
GlaI	GCGC	1 cut(s)	841
GluI	GCNGC	4 cut(s)	63, 396, 441, 616
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	843
HaeIII	GGCC	2 cut(s)	333, 1077
HapII	CCGG	1 cut(s)	1030
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	842
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	5 cut(s)	215, 386, 431, 644, 875
Hin6I	GCGC	1 cut(s)	840
HinP1I	GCGC	1 cut(s)	840
HincII	GTYRAC	1 cut(s)	1005
HindII	GTYRAC	1 cut(s)	1005
HinfI	GANTC	5 cut(s)	143, 260, 373, 1050, 1097
HpaII	CCGG	1 cut(s)	1030
Hpy166II	GTNNAC	3 cut(s)	794, 1005, 1163
Hpy188I	TCNGA	3 cut(s)	243, 529, 1102
Hpy188III	TCNNGA	6 cut(s)	53, 173, 269, 544, 593, 698
Hpy8I	GTNNAC	3 cut(s)	794, 1005, 1163
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	455, 605
HpyCH4III	ACNGT	1 cut(s)	1062
HpyCH4V	TGCA	9 cut(s)	62, 73, 106, 277, 618, 725, 916, 1144, 1271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	7 cut(s)	162, 240, 435, 512, 535, 878, 1254
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	5 cut(s)	215, 386, 431, 644, 875
HspAI	GCGC	1 cut(s)	840
Kzo9I	GATC	3 cut(s)	55, 456, 540
LguI	GCTCTTC	1 cut(s)	957
LmnI	GCTCC	1 cut(s)	971
Lsp1109I	GCAGC	3 cut(s)	74, 427, 602
LweI	GCATC	3 cut(s)	60, 734, 1267
MabI	ACCWGGT	1 cut(s)	18
MaeI	CTAG	5 cut(s)	93, 254, 287, 593, 771
MaeIII	GTNAC	2 cut(s)	908, 1249
MalI	GATC	3 cut(s)	57, 458, 542
MboI	GATC	3 cut(s)	55, 456, 540
MboII	GAAGA	7 cut(s)	335, 368, 629, 944, 1046, 1160, 1168
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	735
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	4 cut(s)	201, 558, 703, 1192
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	254, 1106
MmeI	TCCRAC	1 cut(s)	31
Mox20I	TGGCCA	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	4 cut(s)	204, 585, 707, 828
Msp20I	TGGCCA	1 cut(s)	333
MspI	CCGG	1 cut(s)	1030
MspR9I	CCNGG	5 cut(s)	20, 27, 798, 1031, 1229
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	4 cut(s)	20, 27, 798, 1229
MwoI	GCNNNNNNNGC	1 cut(s)	339
NciI	CCSGG	1 cut(s)	1031
NdeI	CATATG	2 cut(s)	715, 1246
NdeII	GATC	3 cut(s)	55, 456, 540
NlaIII	CATG	5 cut(s)	215, 386, 431, 644, 875
NlaIV	GGNNCC	3 cut(s)	24, 945, 973
NmuCI	GTSAC	1 cut(s)	908
PceI	AGGCCT	1 cut(s)	1077
PciSI	GCTCTTC	1 cut(s)	957
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	143, 373, 1050
PflMI	CCANNNNNTGG	1 cut(s)	719
PkrI	GCNGC	4 cut(s)	64, 397, 442, 617
PleI	GAGTC	2 cut(s)	254, 1105
PpsI	GAGTC	2 cut(s)	254, 1105
PshBI	ATTAAT	1 cut(s)	828
PsiI	TTATAA	1 cut(s)	764
Psp6I	CCWGG	4 cut(s)	18, 25, 796, 1227
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	4 cut(s)	18, 25, 796, 1227
PspN4I	GGNNCC	3 cut(s)	24, 945, 973
PstI	CTGCAG	2 cut(s)	64, 1146
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	2 cut(s)	433, 533
RsaNI	GTAC	2 cut(s)	432, 532
SapI	GCTCTTC	1 cut(s)	957
SaqAI	TTAA	4 cut(s)	204, 585, 707, 828
SatI	GCNGC	4 cut(s)	63, 396, 441, 616
Sau3AI	GATC	3 cut(s)	55, 456, 540
ScaI	AGTACT	1 cut(s)	533
SchI	GAGTC	2 cut(s)	254, 1106
ScrFI	CCNGG	5 cut(s)	20, 27, 798, 1031, 1229
SduI	GDGCHC	1 cut(s)	735
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	3 cut(s)	60, 734, 1267
SfcI	CTRYAG	2 cut(s)	60, 1142
SmlI	CTYRAG	1 cut(s)	1220
SmoI	CTYRAG	1 cut(s)	1220
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	4 cut(s)	201, 558, 703, 1192
SseBI	AGGCCT	1 cut(s)	1077
SsiI	CCGC	5 cut(s)	396, 990, 1126, 1232, 1274
SspMI	CTAG	5 cut(s)	93, 254, 287, 593, 771
StuI	AGGCCT	1 cut(s)	1077
StyD4I	CCNGG	5 cut(s)	18, 25, 796, 1029, 1227
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	1 cut(s)	1062
TaqI	TCGA	4 cut(s)	270, 321, 543, 1095
TasI	AATT	4 cut(s)	201, 558, 703, 1192
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	3 cut(s)	143, 373, 1050
Tru1I	TTAA	4 cut(s)	204, 585, 707, 828
Tru9I	TTAA	4 cut(s)	204, 585, 707, 828
TscAI	CASTG	1 cut(s)	871
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	3 cut(s)	62, 440, 615
Tsp45I	GTSAC	1 cut(s)	908
TspDTI	ATGAA	6 cut(s)	126, 212, 624, 629, 642, 1169
TspRI	CASTG	1 cut(s)	871
Van91I	CCANNNNNTGG	1 cut(s)	719
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	1 cut(s)	703
XbaI	TCTAGA	1 cut(s)	592
XmaJI	CCTAGG	1 cut(s)	770
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	5 cut(s)	93, 254, 287, 593, 771
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.