Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014214

Physical Location & Seq

Genomic Coordinates Forward (+)

26208258 .. 26210716

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTTCCACCCCAGCAACCAGGTTCCAGATCAGCCCCAGCCATTGGCTGTTCAAGATCCTGCAGCTATGATGCAAGTAGATAAACAAGAAACTAGTGTAGTTGTGCAGGAAGAAGTGAAAAATGGAGGCTTCTCACAAGCAGAATCCATCATCTACTACACTAAGAAACTTCAAGATGATTTACAAATGATGGGAATGAAAATTAAACAGCATGAGGACAACTTAAAACTGCTTAAGTCTCAGAAGCACAAACTAGATGACTCTATTCTTGATTTGCAAGTTATTCTAGGCAAGTATCACTCCTCAAGCACTCCTAAAATCGAAGATGATGACCATTCCCGCCGTAAAAGTGAGGAAGAAACCACTGAAAAGATTCTTCAGCATGAGAAGTCTGCCGCAGGCATTTTATGGCAGTTGAAAACTCGTCATGGTACTCAGGTTGCCCTTTTTCCCCCGATCAAGGATGTCGTGGGTATTGTTGGTATGCTTGGCAAAGTAGAGGATGATAATCTTAGCAGGATTTTTTCAGAGTACTTAGGGATCGAGACTATGTTGGCAATTGTCTGTAAGACTTATGAGGGTGTTAAAGCTCTAGAAGTGTATGAGAATGAAGGCTACGTAAAGAAAACTGCTGGTCTCCATGGACTTGGCTCGTCTATTGGTAGGACACTGGAAGGCCGGTTTCAGGTCATCTGCCTTGAAAATCTAAGACCATATGCTGGTGCATCTGTGCCTGATGACCCACAGATGAGGCTTGATCGTTCTAAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0010964 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030880 GO:0031047 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032991 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0060966 GO:0060968 GO:0061695 GO:0065007 GO:0070920 GO:0070921 GO:0071704 GO:0080090 GO:0080188 GO:0090304 GO:1901360 GO:1902275 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.87

Weight (kDa)

5.79

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49250
fragaria_vesca	FvH4_7g31551
malus_domestica	MD01G1218300.v1.1 MD07G1288200.v1.1
prunus_persica	Prupe.2G309700_v2.0.a1
pyrus_communis	pycom01g22830 pycom07g26100
rosa_chinensis	RchiOBHm_Chr1g0380541
rosa_laevigata	RLG00000026286
rosa_multiflora	Rmu_co8407499.1_g000001 Rmu_ssc0000015.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279210
rosa_rugosa	Rorug01G0422400
rosa_samantha	Rh1AG446900 Rh1BG402200 Rh1CG416400 Rh1DG432400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	43, 719
AciI	CCGC	2 cut(s)	340, 396
AclWI	GGATC	2 cut(s)	50, 548
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	2 cut(s)	433, 533
AfiI	CCNNNNNNNGG	4 cut(s)	43, 460, 685, 719
AflII	CTTAAG	1 cut(s)	233
AgsI	TTSAA	4 cut(s)	53, 173, 418, 701
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	2 cut(s)	65, 590
AluI	AGCT	2 cut(s)	65, 590
Alw26I	GTCTC	3 cut(s)	243, 539, 641
AlwI	GGATC	2 cut(s)	50, 548
AoxI	GGCC	1 cut(s)	676
ApeKI	GCWGC	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	372
BaeI	ACNNNNGTAYC	2 cut(s)	423, 456
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	155, 184
BceAI	ACGGC	1 cut(s)	327
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	3 cut(s)	243, 539, 641
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	5 cut(s)	93, 254, 287, 593, 772
BfmI	CTRYAG	1 cut(s)	60
BfrI	CTTAAG	1 cut(s)	233
BisI	GCNGC	2 cut(s)	63, 396
BlsI	GCNGC	2 cut(s)	64, 397
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	60, 734
BpuEI	CTTGAG	1 cut(s)	289
BsaAI	YACGTR	1 cut(s)	619
BsaBI	GATNNNNATC	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	641
BsaJI	CCNNGG	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 460, 685, 719
Bse118I	RCCGGY	1 cut(s)	678
Bse1I	ACTGG	1 cut(s)	675
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	640
BseGI	GGATG	2 cut(s)	469, 508
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	4 cut(s)	43, 460, 685, 719
BseMII	CTCAG	2 cut(s)	254, 449
BseNI	ACTGG	1 cut(s)	675
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	2 cut(s)	11, 36
BsgI	GTGCAG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	678
BsiSI	CCGG	1 cut(s)	679
BslI	CCNNNNNNNGG	4 cut(s)	43, 460, 685, 719
BsmAI	GTCTC	3 cut(s)	243, 539, 641
BsnI	GGCC	1 cut(s)	678
Bso31I	GGTCTC	1 cut(s)	641
Bsp143I	GATC	5 cut(s)	28, 55, 456, 540, 757
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	2 cut(s)	340, 396
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	2 cut(s)	253, 448
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	2 cut(s)	50, 548
BspTI	CTTAAG	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	641
BsrFI	RCCGGY	1 cut(s)	678
BsrI	ACTGG	1 cut(s)	675
BssAI	RCCGGY	1 cut(s)	678
BssECI	CCNNGG	1 cut(s)	640
BssMI	GATC	5 cut(s)	28, 55, 456, 540, 757
BssT1I	CCWWGG	1 cut(s)	640
Bst2UI	CCWGG	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	233
BstBAI	YACGTR	1 cut(s)	619
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	6 cut(s)	162, 240, 435, 512, 535, 707
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	2 cut(s)	469, 508
BstKTI	GATC	5 cut(s)	31, 58, 459, 543, 760
BstMAI	GTCTC	3 cut(s)	243, 539, 641
BstMBI	GATC	5 cut(s)	28, 55, 456, 540, 757
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	60
BstSNI	TACGTA	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	678
BtgI	CCRYGG	1 cut(s)	640
BtsCI	GGATG	2 cut(s)	469, 508
BtsIMutI	CAGTG	2 cut(s)	363, 668
Cac8I	GCNNGC	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	678
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	432, 532
CviAII	CATG	4 cut(s)	212, 383, 428, 641
CviQI	GTAC	2 cut(s)	432, 532
DdeI	CTNAG	6 cut(s)	162, 240, 435, 512, 535, 707
DpnI	GATC	5 cut(s)	30, 57, 458, 542, 759
DpnII	GATC	5 cut(s)	28, 55, 456, 540, 757
Eco105I	TACGTA	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	640
Eco31I	GGTCTC	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	640
ErhI	CCWWGG	1 cut(s)	640
FaeI	CATG	4 cut(s)	215, 386, 431, 644
FatI	CATG	4 cut(s)	211, 382, 427, 640
FauI	CCCGC	1 cut(s)	347
FauNDI	CATATG	1 cut(s)	715
Fnu4HI	GCNGC	2 cut(s)	63, 396
FokI	GGATG	2 cut(s)	476, 515
Fsp4HI	GCNGC	2 cut(s)	63, 396
FspBI	CTAG	5 cut(s)	93, 254, 287, 593, 772
GluI	GCNGC	2 cut(s)	63, 396
GsaI	CCCAGC	2 cut(s)	15, 40
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	1 cut(s)	679
Hin1II	CATG	4 cut(s)	215, 386, 431, 644
HinfI	GANTC	3 cut(s)	143, 260, 373
HpaII	CCGG	1 cut(s)	679
Hpy188I	TCNGA	2 cut(s)	243, 529
Hpy188III	TCNNGA	6 cut(s)	26, 53, 173, 269, 544, 593
HpyAV	CCTTC	2 cut(s)	605, 668
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	5 cut(s)	62, 73, 106, 277, 725
HpyF3I	CTNAG	6 cut(s)	162, 240, 435, 512, 535, 707
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	4 cut(s)	215, 386, 431, 644
Kzo9I	GATC	5 cut(s)	28, 55, 456, 540, 757
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	2 cut(s)	60, 734
MabI	ACCWGGT	1 cut(s)	18
MaeI	CTAG	5 cut(s)	93, 254, 287, 593, 772
MaeII	ACGT	1 cut(s)	618
MalI	GATC	5 cut(s)	30, 57, 458, 542, 759
MboI	GATC	5 cut(s)	28, 55, 456, 540, 757
MboII	GAAGA	4 cut(s)	122, 335, 368, 368
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	2 cut(s)	201, 558
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	7 cut(s)	119, 208, 313, 346, 493, 571, 744
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	4 cut(s)	204, 224, 234, 585
MspCI	CTTAAG	1 cut(s)	233
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	1 cut(s)	20
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	20
NcoI	CCATGG	1 cut(s)	640
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	5 cut(s)	28, 55, 456, 540, 757
NlaIII	CATG	4 cut(s)	215, 386, 431, 644
NlaIV	GGNNCC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	143, 373
PflMI	CCANNNNNTGG	2 cut(s)	43, 719
PkrI	GCNGC	2 cut(s)	64, 397
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	18
PspFI	CCCAGC	2 cut(s)	11, 36
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	2 cut(s)	433, 533
RsaNI	GTAC	2 cut(s)	432, 532
SaqAI	TTAA	4 cut(s)	204, 224, 234, 585
SatI	GCNGC	2 cut(s)	63, 396
Sau3AI	GATC	5 cut(s)	28, 55, 456, 540, 757
ScaI	AGTACT	1 cut(s)	533
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	7 cut(s)	24, 67, 441, 592, 621, 690, 773
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	2 cut(s)	60, 734
SfcI	CTRYAG	1 cut(s)	60
SmlI	CTYRAG	2 cut(s)	233, 304
SmoI	CTYRAG	2 cut(s)	233, 304
SnaBI	TACGTA	1 cut(s)	619
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	2 cut(s)	201, 558
SsiI	CCGC	2 cut(s)	340, 396
SspMI	CTAG	5 cut(s)	93, 254, 287, 593, 772
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	640
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	2 cut(s)	321, 543
TasI	AATT	2 cut(s)	201, 558
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	143, 373
Tru1I	TTAA	4 cut(s)	204, 224, 234, 585
Tru9I	TTAA	4 cut(s)	204, 224, 234, 585
TscAI	CASTG	2 cut(s)	370, 675
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	212, 624
TspRI	CASTG	2 cut(s)	370, 675
Van91I	CCANNNNNTGG	2 cut(s)	43, 719
Vha464I	CTTAAG	1 cut(s)	233
XbaI	TCTAGA	1 cut(s)	592
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	5 cut(s)	93, 254, 287, 593, 772
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.