AT3G49750
NAC Family

inactive receptor kinase At1g27190

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013008
Physical Location & Seq
Reverse (-)
18450422 .. 18451659
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49750.2

Sequence Viewer

Length: 825 bp
ATGACAAGGAGTCACCGGTTACTCCTTCTCCTTCTACTAATCTTCCAAACGGCACAACGTTTAACCACCGCCGATCCAAACGACGAAGCGTGTTTGAAAAACCTCCGGCAAAACTTAGAAGATCCGGCGAGTAATCTCCGTAACTGGACAAACTCCGTCTTCTCAAATCCATGCTCCGGCTTCACCTCATACCTCCCCGGAGCTACCTGTAACAACGGAAGAATCTACAAACTCTCACTCACAAACCTCTCTCTCCGCGGCTCAATCTCACCGTTTCTATCAAACTGTACAAATCTCCAATCCCTAGATCTATCATCAAACCAGATCTCCGGCGTAATCCCACCGGAGATTCAGTATCTCGTTAACCTCGCCGTACTAAACCTCTCATCGAATCATCTCTCCGGCGAAATCACTCCGCAGCTCGCTCTTTGCGCTTACTTAAACGTAATCGATCTCCACGATAACGAATTATCCGGTCAGATTCCGCAGCAATTAGGTCTATTAGCGAGGCTCTCGGCGTTTGATGTGTCGAATAACAAACTTTCCGGTCAGATTCCGACGTATTTGTCGAATAGGACTGGGAATTTCCCGAGGTTTAACGCGAGTTCGTTTATAGGGAATAAAGGATTGTATGGTTATCCGTTGCAGGAGATGATGATGAAGAGTAAAGGTTTGTCTGTGATGGCCATTGTTGGGATTGGACTTGGGAGTGGAATCGCGAGCTTGATGATTAGTTTTACTGGTGTTTGTTTATGGTTGAGGATTACTGAGAAGAAGATTGTTGAAGAAGAAGGTAAGATTAGTCAATCTATGCCTGATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

274

Amino Acids

29.99

Weight (kDa)

8.2

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 76 - 133 2e-07 Leucine rich repeat
LRR_4 PF12799 97 - 137 1.5e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49750 AT3G49750 AT5G65830
fragaria_vesca FvH4_1g18280
malus_domestica MD02G1190100.v1.1 MD15G1301200.v1.1
prunus_persica Prupe.6G216300_v2.0.a1
pyrus_communis pycom15g26380
rosa_chinensis RchiOBHm_Chr2g0108871
rosa_laevigata RLG00000017693
rosa_multiflora Rmu_sc0004830.1_g000001
rosa_roxburghii Rroxscaffold_2G00134760
rosa_rugosa Rorug02G0156500
rosa_samantha Rh2AG206900 Rh2BG218100 Rh2CG210100 Rh2DG213200
rosa_wichuraiana Rw2G016440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 565
AccII CGCG 3 cut(s) 258, 602, 719
AciI CCGC 5 cut(s) 69, 256, 258, 416, 485
AclI AACGTT 1 cut(s) 58
AclWI GGATC 2 cut(s) 68, 116
AcoI YGGCCR 1 cut(s) 684
AcsI RAATTY 1 cut(s) 583
AfaI GTAC 2 cut(s) 289, 375
AfiI CCNNNNNNNGG 2 cut(s) 176, 693
AgeI ACCGGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 97, 785
AhdI GACNNNNNGTC 1 cut(s) 9
AluBI AGCT 3 cut(s) 203, 421, 723
AluI AGCT 3 cut(s) 203, 421, 723
AlwI GGATC 2 cut(s) 68, 116
Ama87I CYCGRG 1 cut(s) 589
AoxI GGCC 1 cut(s) 684
ApeKI GCWGC 2 cut(s) 418, 487
ApoI RAATTY 1 cut(s) 583
AsiGI ACCGGT 1 cut(s) 15
AspLEI GCGC 1 cut(s) 434
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 3 cut(s) 5, 175, 261
AvaI CYCGRG 1 cut(s) 589
BalI TGGCCA 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 430, 499
BccI CCATC 1 cut(s) 676
BceAI ACGGC 2 cut(s) 66, 356
BcnI CCSGG 1 cut(s) 198
BfaI CTAG 1 cut(s) 305
BglII AGATCT 2 cut(s) 307, 324
BisI GCNGC 3 cut(s) 259, 419, 488
BlsI GCNGC 3 cut(s) 260, 420, 489
Bme1390I CCNGG 1 cut(s) 198
BmeRI GACNNNNNGTC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 589
BmrFI CCNGG 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 588
BmuI ACTGGG 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 450
BsaJI CCNNGG 3 cut(s) 196, 256, 590
BsaWI WCCGGW 4 cut(s) 15, 343, 473, 545
BsaXI ACNNNNNCTCC 6 cut(s) 12, 42, 311, 338, 341, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 693
Bse118I RCCGGY 1 cut(s) 15
Bse1I ACTGG 3 cut(s) 149, 583, 745
BseCI ATCGAT 1 cut(s) 450
BseDI CCNNGG 3 cut(s) 196, 256, 590
BseLI CCNNNNNNNGG 2 cut(s) 176, 693
BseMII CTCAG 1 cut(s) 759
BseNI ACTGG 3 cut(s) 149, 583, 745
BseXI GCAGC 2 cut(s) 430, 499
Bsh1236I CGCG 3 cut(s) 258, 602, 719
BshFI GGCC 1 cut(s) 686
BshTI ACCGGT 1 cut(s) 15
BshVI ATCGAT 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 589
BslI CCNNNNNNNGG 2 cut(s) 176, 693
BsnI GGCC 1 cut(s) 686
BsoBI CYCGRG 1 cut(s) 589
Bsp1407I TGTACA 1 cut(s) 287
Bsp143I GATC 5 cut(s) 73, 121, 307, 324, 451
Bsp68I TCGCGA 1 cut(s) 719
BspACI CCGC 5 cut(s) 69, 256, 258, 416, 485
BspANI GGCC 1 cut(s) 686
BspCNI CTCAG 1 cut(s) 760
BspDI ATCGAT 1 cut(s) 450
BspFNI CGCG 3 cut(s) 258, 602, 719
BspPI GGATC 2 cut(s) 68, 116
BsrFI RCCGGY 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 287
BsrI ACTGG 3 cut(s) 149, 583, 745
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 3 cut(s) 196, 256, 590
BssMI GATC 5 cut(s) 73, 121, 307, 324, 451
Bst4CI ACNGT 2 cut(s) 273, 287
Bst6I CTCTTC 1 cut(s) 656
BstAUI TGTACA 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 423, 721
BstDEI CTNAG 2 cut(s) 115, 768
BstDSI CCRYGG 1 cut(s) 256
BstFNI CGCG 3 cut(s) 258, 602, 719
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 5 cut(s) 76, 124, 310, 327, 454
BstMBI GATC 5 cut(s) 73, 121, 307, 324, 451
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 196
BstUI CGCG 3 cut(s) 258, 602, 719
BstV1I GCAGC 2 cut(s) 430, 499
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 3 cut(s) 121, 307, 324
BstYI RGATCY 3 cut(s) 121, 307, 324
Bsu15I ATCGAT 1 cut(s) 450
BsuRI GGCC 1 cut(s) 686
BsuTUI ATCGAT 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 256
BtuMI TCGCGA 1 cut(s) 719
Cac8I GCNNGC 2 cut(s) 423, 721
CfoI GCGC 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 15
Cfr42I CCGCGG 1 cut(s) 259
ClaI ATCGAT 1 cut(s) 450
Csp6I GTAC 2 cut(s) 288, 374
CspAI ACCGGT 1 cut(s) 15
CviAII CATG 1 cut(s) 171
CviJI RGCY 7 cut(s) 180, 203, 261, 421, 511, 686, 723
CviKI_1 RGCY 7 cut(s) 180, 203, 261, 421, 511, 686, 723
CviQI GTAC 2 cut(s) 288, 374
DdeI CTNAG 2 cut(s) 115, 768
DpnI GATC 5 cut(s) 75, 123, 309, 326, 453
DpnII GATC 5 cut(s) 73, 121, 307, 324, 451
DrdI GACNNNNNNGTC 1 cut(s) 565
DriI GACNNNNNGTC 1 cut(s) 9
DseDI GACNNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 684
Eam1104I CTCTTC 1 cut(s) 656
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 656
Eco88I CYCGRG 1 cut(s) 589
FaeI CATG 1 cut(s) 174
FaiI YATR 6 cut(s) 172, 190, 614, 633, 754, 812
FatI CATG 1 cut(s) 170
Fnu4HI GCNGC 3 cut(s) 259, 419, 488
Fsp4HI GCNGC 3 cut(s) 259, 419, 488
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 433
GluI GCNGC 3 cut(s) 259, 419, 488
HaeIII GGCC 1 cut(s) 686
HhaI GCGC 1 cut(s) 434
Hin1II CATG 1 cut(s) 174
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 7 cut(s) 10, 222, 349, 391, 481, 553, 714
HpaI GTTAAC 1 cut(s) 364
HphI GGTGA 3 cut(s) 5, 175, 261
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 3 cut(s) 480, 552, 558
Hpy188III TCNNGA 2 cut(s) 589, 718
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 2 cut(s) 86, 562
HpyAV CCTTC 3 cut(s) 35, 41, 785
HpyCH4III ACNGT 2 cut(s) 273, 287
HpyCH4IV ACGT 3 cut(s) 58, 444, 560
HpyCH4V TGCA 1 cut(s) 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 2 cut(s) 115, 768
HpySE526I ACGT 3 cut(s) 58, 444, 560
Hsp92II CATG 1 cut(s) 174
HspAI GCGC 1 cut(s) 432
KspAI GTTAAC 1 cut(s) 364
KspI CCGCGG 1 cut(s) 259
Kzo9I GATC 5 cut(s) 73, 121, 307, 324, 451
LmnI GCTCC 2 cut(s) 179, 200
Lsp1109I GCAGC 2 cut(s) 430, 499
MaeI CTAG 1 cut(s) 305
MaeII ACGT 3 cut(s) 58, 444, 560
MaeIII GTNAC 4 cut(s) 11, 18, 140, 209
MalI GATC 5 cut(s) 75, 123, 309, 326, 453
MboI GATC 5 cut(s) 73, 121, 307, 324, 451
MboII GAAGA 9 cut(s) 34, 131, 151, 231, 673, 784, 787, 797, 800
MflI RGATCY 3 cut(s) 121, 307, 324
MlsI TGGCCA 1 cut(s) 686
MluCI AATT 3 cut(s) 467, 491, 583
MluNI TGGCCA 1 cut(s) 686
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 581
MnlI CCTC 9 cut(s) 113, 196, 203, 257, 377, 392, 501, 585, 753
Mox20I TGGCCA 1 cut(s) 686
MscI TGGCCA 1 cut(s) 686
MseI TTAA 4 cut(s) 62, 363, 440, 597
Msp20I TGGCCA 1 cut(s) 686
MspA1I CMGCKG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 198
MvnI CGCG 3 cut(s) 258, 602, 719
MwoI GCNNNNNNNGC 1 cut(s) 431
NciI CCSGG 1 cut(s) 198
NdeII GATC 5 cut(s) 73, 121, 307, 324, 451
NlaIII CATG 1 cut(s) 174
NmeAIII GCCGAG 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 11
NruI TCGCGA 1 cut(s) 719
PcsI WCGNNNNNNNCGW 2 cut(s) 456, 566
PfeI GAWTC 6 cut(s) 222, 349, 391, 481, 553, 714
PinAI ACCGGT 1 cut(s) 15
PkrI GCNGC 3 cut(s) 260, 420, 489
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp1406I AACGTT 1 cut(s) 58
PsuI RGATCY 3 cut(s) 121, 307, 324
RruI TCGCGA 1 cut(s) 719
RsaI GTAC 2 cut(s) 289, 375
RsaNI GTAC 2 cut(s) 288, 374
SacII CCGCGG 1 cut(s) 259
SaqAI TTAA 4 cut(s) 62, 363, 440, 597
SatI GCNGC 3 cut(s) 259, 419, 488
Sau3AI GATC 5 cut(s) 73, 121, 307, 324, 451
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 198
Sfr303I CCGCGG 1 cut(s) 259
SgrBI CCGCGG 1 cut(s) 259
Sse9I AATT 3 cut(s) 467, 491, 583
SsiI CCGC 5 cut(s) 69, 256, 258, 416, 485
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 2 cut(s) 273, 287
TaiI ACGT 3 cut(s) 61, 447, 563
TaqI TCGA 4 cut(s) 389, 450, 530, 569
TasI AATT 3 cut(s) 467, 491, 583
TatI WGTACW 1 cut(s) 287
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 6 cut(s) 222, 349, 391, 481, 553, 714
Tru1I TTAA 4 cut(s) 62, 363, 440, 597
Tru9I TTAA 4 cut(s) 62, 363, 440, 597
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 2 cut(s) 418, 487
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 674
TspGWI ACGGA 4 cut(s) 128, 145, 231, 630
XapI RAATTY 1 cut(s) 583
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.