Rorug02G0156500
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013008
Physical Location & Seq
Forward (+)
13939907 .. 13940571
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0156500.1

Sequence Viewer

Length: 570 bp
ATGGGTCTAATTGAGAAGACTGTGCAAGGAGTCAGGGATGTGAAGGAGACTCCGCTTTTGGCAAGGAAAAACGGTGACCAACTTGTTGAGTCGGCGAGGGATGGGAAGGAGACCTTGGCTTTGGCAAGGAAAATAAACATGTTGGTCAAACGAATTGAACGTTTCGCAAACGTTTATCCTCACAAAGGTGACCGTAAATTTTTTGTCCCTAAAGGTGACTTCCTTAGAAGTTGCCTTCCAGTATTCTATTATATTGGCATTCACACTATTAAAATAGCAAACTGGTTTCGAGTTCATAGCGGCAGCGCCATCCTCCCGGATCCCGACCTGCGCGTAGCGACGCTTGCCGTCGAGTACCTTCCCCTCCTCGTTTCTTCAAGGGTTGCGGTGTTGGCTGGCCGGTTTTGGTTGAAGTCCGACGGGTGTAACAGATCGAGGTCGAGGTTAGATCGAGACTTTGGTGTAGCAGATCGGCGCTGGGATCACATGTCAGCGTTCCATCTCTGTTTGGGTTGGTGTGAAGATCCGGCCGCTGGGTTTGGATCGGAGTTGATCATTAGTTGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

189

Amino Acids

21.52

Weight (kDa)

9.54

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49750 AT3G49750 AT5G65830
fragaria_vesca FvH4_1g18280
malus_domestica MD02G1190100.v1.1 MD15G1301200.v1.1
prunus_persica Prupe.6G216300_v2.0.a1
pyrus_communis pycom15g26380
rosa_chinensis RchiOBHm_Chr2g0108871
rosa_laevigata RLG00000017693
rosa_multiflora Rmu_sc0004830.1_g000001
rosa_roxburghii Rroxscaffold_2G00134760
rosa_rugosa Rorug02G0156500
rosa_samantha Rh2AG206900 Rh2BG218100 Rh2CG210100 Rh2DG213200
rosa_wichuraiana Rw2G016440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 336
AccII CGCG 1 cut(s) 333
AciI CCGC 4 cut(s) 53, 300, 386, 531
AclI AACGTT 2 cut(s) 160, 171
AclWI GGATC 5 cut(s) 314, 327, 489, 518, 550
AcoI YGGCCR 2 cut(s) 397, 528
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 2 cut(s) 185, 533
AflIII ACRYGT 2 cut(s) 138, 486
AgsI TTSAA 3 cut(s) 158, 378, 412
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AleI CACNNNNGTG 1 cut(s) 186
Alw26I GTCTC 3 cut(s) 41, 104, 447
AlwI GGATC 5 cut(s) 314, 327, 489, 518, 550
AoxI GGCC 2 cut(s) 397, 528
ApeKI GCWGC 1 cut(s) 303
ApoI RAATTY 1 cut(s) 197
ArsI GACNNNNNNTTYG 4 cut(s) 40, 72, 103, 135
AspLEI GCGC 3 cut(s) 308, 333, 477
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 86, 200, 227
BamHI GGATCC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 315
BccI CCATC 3 cut(s) 95, 317, 507
BceAI ACGGC 1 cut(s) 332
BclI TGATCA 1 cut(s) 552
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 3 cut(s) 41, 104, 447
BfoI RGCGCY 2 cut(s) 309, 478
BfuAI ACCTGC 1 cut(s) 336
BisI GCNGC 3 cut(s) 301, 304, 531
BlsI GCNGC 3 cut(s) 302, 305, 532
Bme1390I CCNGG 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 533
Bse118I RCCGGY 1 cut(s) 399
Bse1I ACTGG 2 cut(s) 239, 287
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 3 cut(s) 43, 106, 309
BseLI CCNNNNNNNGG 2 cut(s) 185, 533
BseNI ACTGG 2 cut(s) 239, 287
BseRI GAGGAG 1 cut(s) 356
BseX3I CGGCCG 1 cut(s) 528
BseXI GCAGC 1 cut(s) 315
BseYI CCCAGC 2 cut(s) 477, 533
Bsh1236I CGCG 1 cut(s) 333
Bsh1285I CGRYCG 1 cut(s) 531
BshFI GGCC 2 cut(s) 399, 530
BsiEI CGRYCG 1 cut(s) 531
BsiSI CCGG 3 cut(s) 317, 400, 527
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 185, 533
BsmAI GTCTC 3 cut(s) 41, 104, 447
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 2 cut(s) 399, 530
Bso31I GGTCTC 1 cut(s) 104
Bsp143I GATC 8 cut(s) 319, 431, 448, 469, 481, 523, 542, 552
BspACI CCGC 4 cut(s) 53, 300, 386, 531
BspANI GGCC 2 cut(s) 399, 530
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 321
BspMI ACCTGC 1 cut(s) 336
BspPI GGATC 5 cut(s) 314, 327, 489, 518, 550
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 399
BsrI ACTGG 2 cut(s) 239, 287
BssAI RCCGGY 1 cut(s) 399
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 8 cut(s) 319, 431, 448, 469, 481, 523, 542, 552
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 22, 74, 194
BstC8I GCNNGC 2 cut(s) 345, 397
BstDEI CTNAG 1 cut(s) 224
BstEII GGTNACC 2 cut(s) 74, 188
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 3 cut(s) 43, 106, 309
BstFNI CGCG 1 cut(s) 333
BstH2I RGCGCY 2 cut(s) 309, 478
BstHHI GCGC 3 cut(s) 308, 333, 477
BstKTI GATC 8 cut(s) 322, 434, 451, 472, 484, 526, 545, 555
BstMAI GTCTC 3 cut(s) 41, 104, 447
BstMBI GATC 8 cut(s) 319, 431, 448, 469, 481, 523, 542, 552
BstMCI CGRYCG 1 cut(s) 531
BstMWI GCNNNNNNNGC 2 cut(s) 344, 392
BstNSI RCATGY 2 cut(s) 142, 490
BstPI GGTNACC 2 cut(s) 74, 188
BstSCI CCNGG 1 cut(s) 315
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 2 cut(s) 319, 523
BstYI RGATCY 2 cut(s) 319, 523
BstZI CGGCCG 1 cut(s) 528
BsuRI GGCC 2 cut(s) 399, 530
BtsCI GGATG 3 cut(s) 43, 106, 309
BveI ACCTGC 1 cut(s) 336
Cac8I GCNNGC 2 cut(s) 345, 397
CfoI GCGC 3 cut(s) 308, 333, 477
Cfr10I RCCGGY 1 cut(s) 399
CseI GACGC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 355
CviAII CATG 2 cut(s) 139, 487
CviJI RGCY 4 cut(s) 119, 395, 399, 530
CviKI_1 RGCY 4 cut(s) 119, 395, 399, 530
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 1 cut(s) 224
DpnI GATC 8 cut(s) 321, 433, 450, 471, 483, 525, 544, 554
DpnII GATC 8 cut(s) 319, 431, 448, 469, 481, 523, 542, 552
EaeI YGGCCR 2 cut(s) 397, 528
EagI CGGCCG 1 cut(s) 528
EclXI CGGCCG 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 104
Eco52I CGGCCG 1 cut(s) 528
Eco91I GGTNACC 2 cut(s) 74, 188
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoO65I GGTNACC 2 cut(s) 74, 188
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 2 cut(s) 142, 490
FaiI YATR 4 cut(s) 140, 252, 297, 488
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FaqI GGGAC 1 cut(s) 191
FatI CATG 2 cut(s) 138, 486
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 3 cut(s) 301, 304, 531
FokI GGATG 3 cut(s) 50, 113, 296
Fsp4HI GCNGC 3 cut(s) 301, 304, 531
GlaI GCGC 3 cut(s) 307, 332, 476
GluI GCNGC 3 cut(s) 301, 304, 531
GsaI CCCAGC 2 cut(s) 481, 537
HaeII RGCGCY 2 cut(s) 309, 478
HaeIII GGCC 2 cut(s) 399, 530
HapII CCGG 3 cut(s) 317, 400, 527
HgaI GACGC 1 cut(s) 349
HhaI GCGC 3 cut(s) 308, 333, 477
Hin1II CATG 2 cut(s) 142, 490
Hin6I GCGC 3 cut(s) 306, 331, 475
HinP1I GCGC 3 cut(s) 306, 331, 475
HinfI GANTC 3 cut(s) 30, 49, 89
HpaII CCGG 3 cut(s) 317, 400, 527
HphI GGTGA 3 cut(s) 86, 200, 227
Hpy188I TCNGA 2 cut(s) 418, 547
Hpy188III TCNNGA 2 cut(s) 323, 452
Hpy99I CGWCG 3 cut(s) 343, 353, 422
HpyAV CCTTC 4 cut(s) 37, 100, 245, 368
HpyCH4III ACNGT 3 cut(s) 22, 74, 194
HpyCH4IV ACGT 2 cut(s) 160, 171
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 392
HpyF3I CTNAG 1 cut(s) 224
HpySE526I ACGT 2 cut(s) 160, 171
Hsp92II CATG 2 cut(s) 142, 490
HspAI GCGC 3 cut(s) 306, 331, 475
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 8 cut(s) 319, 431, 448, 469, 481, 523, 542, 552
Lsp1109I GCAGC 1 cut(s) 315
MaeII ACGT 2 cut(s) 160, 171
MaeIII GTNAC 4 cut(s) 74, 188, 215, 425
MalI GATC 8 cut(s) 321, 433, 450, 471, 483, 525, 544, 554
MboI GATC 8 cut(s) 319, 431, 448, 469, 481, 523, 542, 552
MboII GAAGA 3 cut(s) 28, 366, 533
MflI RGATCY 2 cut(s) 319, 523
MluCI AATT 3 cut(s) 9, 153, 197
MlyI GAGTC 3 cut(s) 39, 43, 98
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 7 cut(s) 90, 189, 323, 374, 377, 429, 435
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 3 cut(s) 317, 400, 527
MspR9I CCNGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 258
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 344, 392
NciI CCSGG 1 cut(s) 317
NdeII GATC 8 cut(s) 319, 431, 448, 469, 481, 523, 542, 552
NlaIII CATG 2 cut(s) 142, 490
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 3 cut(s) 74, 188, 215
NspI RCATGY 2 cut(s) 142, 490
OliI CACNNNNGTG 1 cut(s) 186
PciI ACATGT 2 cut(s) 138, 486
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PctI GAATGC 1 cut(s) 258
PfoI TCCNGGA 1 cut(s) 315
PkrI GCNGC 3 cut(s) 302, 305, 532
PleI GAGTC 3 cut(s) 38, 43, 97
PpsI GAGTC 3 cut(s) 38, 43, 97
PscI ACATGT 2 cut(s) 138, 486
Psp1406I AACGTT 2 cut(s) 160, 171
PspEI GGTNACC 2 cut(s) 74, 188
PspFI CCCAGC 2 cut(s) 477, 533
PspN4I GGNNCC 1 cut(s) 321
PsuI RGATCY 2 cut(s) 319, 523
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 301, 304, 531
Sau3AI GATC 8 cut(s) 319, 431, 448, 469, 481, 523, 542, 552
SchI GAGTC 3 cut(s) 39, 43, 98
ScrFI CCNGG 1 cut(s) 317
SetI ASST 9 cut(s) 116, 163, 174, 190, 217, 330, 360, 440, 446
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 3 cut(s) 9, 153, 197
SsiI CCGC 4 cut(s) 53, 300, 386, 531
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 22, 74, 194
TaiI ACGT 2 cut(s) 163, 174
TaqI TCGA 5 cut(s) 289, 351, 434, 440, 451
TasI AATT 3 cut(s) 9, 153, 197
TauI GCSGC 2 cut(s) 303, 533
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseFI GTSAC 3 cut(s) 74, 188, 215
TseI GCWGC 1 cut(s) 303
Tsp45I GTSAC 3 cut(s) 74, 188, 215
TspDTI ATGAA 1 cut(s) 284
XagI CCTNNNNNAGG 1 cut(s) 183
XapI RAATTY 1 cut(s) 197
XceI RCATGY 2 cut(s) 142, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.