AT5G65830
NAC Family

inactive receptor kinase At1g27190

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013008
Physical Location & Seq
Reverse (-)
26341963 .. 26343546
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65830.1

Sequence Viewer

Length: 840 bp
ATGCCGGTAAATCACCGGTTTACGTTTAGCTACCGGTTACTCTTCCTCATCTTCCTTTTGAGTTTCGAAACGGCACAGCGTTTGGTCACCGGTGACCCAAACGACGAAGCATGCTTGACGAATCTCCGTCAGAGTTTAGAAGATCCAGCTAATAATCTCCGTAACTGGACAAAATCCTTCTTCATAAATCCTTGCTCCGGCTTCTCTTCTTATCTTCATGGAGTCATTTGCAACAATGGCAGAATTTACAAACTCTCCTTAACAAATCTCTCTCTCCGTGGCTCAATCTCTCCGTTTCTCTCTAATTGCACAAATCTCCAATCCCTAGATCTATCTTCCAACCAGATCTCCGGCGAGATCCCGCCGCAATTACAGTTTTTCGTTAACCTAGCCGTTCTTAATCTCTCTTCTAATCGTCTCTCCGGTCAAATCTCACCACAAATCGCTCTCTGCGCTTACTTAAACGTCATCGATCTTCACGATAACCAACTCTCCGGTCAAATTCCGTTTCAGTTCGGGCTTCTCGCTAGATTAACGGCGTTTGATGTCTCTAATAACAAATTATCCGGTCAGATTCCCTCGAATCTGGCGATGCGTAACGGAAACTTGCCGAGATTTAATGCGAGCTCGTTTATAGGGAACAAGAAATTGTTTGGGTATCCGTTGGAGGAGATGAAGAACAAAGGATTGTCGATAATGGCGATTGTTGGGATTGGACTTGGAAGTGGAATCGCGAGCTTAGTGATTAGCTTCACTGGAGTTTGTATATGGTTGAAGATTACAGAGAAAAAGATGGAGGAAGAAGAAGGAAAGATAAGTCACTCCATGCCTGTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

279

Amino Acids

30.88

Weight (kDa)

8.74

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 104 - 145 1.3e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49750 AT3G49750 AT5G65830
fragaria_vesca FvH4_1g18280
malus_domestica MD02G1190100.v1.1 MD15G1301200.v1.1
prunus_persica Prupe.6G216300_v2.0.a1
pyrus_communis pycom15g26380
rosa_chinensis RchiOBHm_Chr2g0108871
rosa_laevigata RLG00000017693
rosa_multiflora Rmu_sc0004830.1_g000001
rosa_roxburghii Rroxscaffold_2G00134760
rosa_rugosa Rorug02G0156500
rosa_samantha Rh2AG206900 Rh2BG218100 Rh2CG210100 Rh2DG213200
rosa_wichuraiana Rw2G016440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 734
AciI CCGC 2 cut(s) 362, 365
AclWI GGATC 2 cut(s) 137, 352
AcsI RAATTY 2 cut(s) 243, 501
AfiI CCNNNNNNNGG 1 cut(s) 197
AgeI ACCGGT 3 cut(s) 15, 33, 89
AgsI TTSAA 1 cut(s) 775
AluBI AGCT 5 cut(s) 30, 149, 627, 738, 750
AluI AGCT 5 cut(s) 30, 149, 627, 738, 750
Alw21I GWGCWC 1 cut(s) 629
Alw26I GTCTC 2 cut(s) 422, 553
AlwI GGATC 2 cut(s) 137, 352
ApoI RAATTY 2 cut(s) 243, 501
AsiGI ACCGGT 3 cut(s) 15, 33, 89
AspLEI GCGC 1 cut(s) 455
AsuHPI GGTGA 4 cut(s) 5, 79, 104, 426
AsuII TTCGAA 1 cut(s) 66
BanII GRGCYC 1 cut(s) 629
Bbv12I GWGCWC 1 cut(s) 629
BccI CCATC 1 cut(s) 787
BceAI ACGGC 3 cut(s) 87, 377, 552
BciVI GTATCC 1 cut(s) 669
BcoDI GTCTC 2 cut(s) 422, 553
BfaI CTAG 3 cut(s) 326, 389, 528
BfuI GTATCC 1 cut(s) 669
BglII AGATCT 2 cut(s) 328, 345
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
BmsI GCATC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 777
Bpu14I TTCGAA 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 277
BsaWI WCCGGW 6 cut(s) 15, 33, 89, 422, 494, 566
BsaXI ACNNNNNCTCC 6 cut(s) 239, 269, 332, 362, 476, 506
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 4 cut(s) 4, 15, 33, 89
Bse1I ACTGG 2 cut(s) 170, 760
BseCI ATCGAT 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 197
BseNI ACTGG 2 cut(s) 170, 760
BseRI GAGGAG 1 cut(s) 683
Bsh1236I CGCG 1 cut(s) 734
BshTI ACCGGT 3 cut(s) 15, 33, 89
BshVI ATCGAT 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 629
BsiSI CCGG 9 cut(s) 5, 16, 34, 90, 198, 351, 423, 495, 567
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 2 cut(s) 422, 553
BsmBI CGTCTC 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 629
Bsp143I GATC 5 cut(s) 142, 328, 345, 357, 472
Bsp68I TCGCGA 1 cut(s) 734
BspACI CCGC 2 cut(s) 362, 365
BspDI ATCGAT 1 cut(s) 471
BspFNI CGCG 1 cut(s) 734
BspPI GGATC 2 cut(s) 137, 352
BspT104I TTCGAA 1 cut(s) 66
BsrFI RCCGGY 4 cut(s) 4, 15, 33, 89
BsrI ACTGG 2 cut(s) 170, 760
BssAI RCCGGY 4 cut(s) 4, 15, 33, 89
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 5 cut(s) 142, 328, 345, 357, 472
Bst4CI ACNGT 1 cut(s) 375
Bst6I CTCTTC 3 cut(s) 47, 211, 412
BstBI TTCGAA 1 cut(s) 66
BstC8I GCNNGC 3 cut(s) 112, 625, 736
BstDEI CTNAG 1 cut(s) 739
BstDSI CCRYGG 1 cut(s) 277
BstEII GGTNACC 2 cut(s) 85, 92
BstFNI CGCG 1 cut(s) 734
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 5 cut(s) 145, 331, 348, 360, 475
BstMAI GTCTC 2 cut(s) 422, 553
BstMBI GATC 5 cut(s) 142, 328, 345, 357, 472
BstMWI GCNNNNNNNGC 2 cut(s) 237, 452
BstNSI RCATGY 1 cut(s) 114
BstPI GGTNACC 2 cut(s) 85, 92
BstUI CGCG 1 cut(s) 734
BstX2I RGATCY 4 cut(s) 142, 328, 345, 357
BstYI RGATCY 4 cut(s) 142, 328, 345, 357
Bsu15I ATCGAT 1 cut(s) 471
BsuI GTATCC 1 cut(s) 669
BsuTUI ATCGAT 1 cut(s) 471
BtgI CCRYGG 1 cut(s) 277
BtgZI GCGATG 1 cut(s) 605
BtsIMutI CAGTG 1 cut(s) 753
BtuMI TCGCGA 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 112, 625, 736
CfoI GCGC 1 cut(s) 455
Cfr10I RCCGGY 4 cut(s) 4, 15, 33, 89
ClaI ATCGAT 1 cut(s) 471
CspAI ACCGGT 3 cut(s) 15, 33, 89
CviAII CATG 3 cut(s) 111, 218, 826
CviJI RGCY 9 cut(s) 30, 149, 201, 282, 392, 520, 627, 738, 750
CviKI_1 RGCY 9 cut(s) 30, 149, 201, 282, 392, 520, 627, 738, 750
DdeI CTNAG 1 cut(s) 739
DpnI GATC 5 cut(s) 144, 330, 347, 359, 474
DpnII GATC 5 cut(s) 142, 328, 345, 357, 472
Eam1104I CTCTTC 3 cut(s) 47, 211, 412
EarI CTCTTC 3 cut(s) 47, 211, 412
Ecl136II GAGCTC 1 cut(s) 627
Eco24I GRGCYC 1 cut(s) 629
Eco53kI GAGCTC 1 cut(s) 627
Eco91I GGTNACC 2 cut(s) 85, 92
EcoICRI GAGCTC 1 cut(s) 627
EcoO65I GGTNACC 2 cut(s) 85, 92
EcoT38I GRGCYC 1 cut(s) 629
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 3 cut(s) 114, 221, 829
FaiI YATR 7 cut(s) 112, 185, 219, 635, 767, 769, 827
FatI CATG 3 cut(s) 110, 217, 825
FauI CCCGC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 629
Fsp4HI GCNGC 1 cut(s) 365
FspBI CTAG 3 cut(s) 326, 389, 528
GlaI GCGC 1 cut(s) 454
GluI GCNGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 777
HapII CCGG 9 cut(s) 5, 16, 34, 90, 198, 351, 423, 495, 567
HhaI GCGC 1 cut(s) 455
Hin1II CATG 3 cut(s) 114, 221, 829
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 5 cut(s) 121, 222, 574, 583, 729
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 9 cut(s) 5, 16, 34, 90, 198, 351, 423, 495, 567
HphI GGTGA 4 cut(s) 5, 79, 104, 426
Hpy166II GTNNAC 3 cut(s) 21, 385, 835
Hpy188I TCNGA 2 cut(s) 132, 573
Hpy188III TCNNGA 2 cut(s) 479, 733
Hpy8I GTNNAC 3 cut(s) 21, 385, 835
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 187, 800
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4IV ACGT 2 cut(s) 23, 465
HpyCH4V TGCA 2 cut(s) 231, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 452
HpyF3I CTNAG 1 cut(s) 739
HpySE526I ACGT 2 cut(s) 23, 465
Hsp92II CATG 3 cut(s) 114, 221, 829
HspAI GCGC 1 cut(s) 453
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 5 cut(s) 142, 328, 345, 357, 472
LmnI GCTCC 1 cut(s) 200
LweI GCATC 1 cut(s) 582
MaeI CTAG 3 cut(s) 326, 389, 528
MaeII ACGT 2 cut(s) 23, 465
MaeIII GTNAC 6 cut(s) 36, 85, 92, 161, 596, 818
MalI GATC 5 cut(s) 144, 330, 347, 359, 474
MboI GATC 5 cut(s) 142, 328, 345, 357, 472
MflI RGATCY 4 cut(s) 142, 328, 345, 357
MhlI GDGCHC 1 cut(s) 629
MluCI AATT 6 cut(s) 243, 304, 368, 501, 560, 647
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 2 cut(s) 363, 645
MnlI CCTC 4 cut(s) 56, 589, 661, 790
MseI TTAA 6 cut(s) 260, 384, 399, 461, 533, 618
MspI CCGG 9 cut(s) 5, 16, 34, 90, 198, 351, 423, 495, 567
MvnI CGCG 1 cut(s) 734
MwoI GCNNNNNNNGC 2 cut(s) 237, 452
NdeII GATC 5 cut(s) 142, 328, 345, 357, 472
NlaIII CATG 3 cut(s) 114, 221, 829
NmeAIII GCCGAG 1 cut(s) 636
NmuCI GTSAC 3 cut(s) 85, 92, 818
NruI TCGCGA 1 cut(s) 734
NspI RCATGY 1 cut(s) 114
NspV TTCGAA 1 cut(s) 66
PaeI GCATGC 1 cut(s) 114
PcsI WCGNNNNNNNCGW 3 cut(s) 477, 587, 698
PfeI GAWTC 4 cut(s) 121, 574, 583, 729
PinAI ACCGGT 3 cut(s) 15, 33, 89
PkrI GCNGC 1 cut(s) 366
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Psp124BI GAGCTC 1 cut(s) 629
PspEI GGTNACC 2 cut(s) 85, 92
PsuI RGATCY 4 cut(s) 142, 328, 345, 357
RruI TCGCGA 1 cut(s) 734
SacI GAGCTC 1 cut(s) 629
SaqAI TTAA 6 cut(s) 260, 384, 399, 461, 533, 618
SatI GCNGC 1 cut(s) 365
Sau3AI GATC 5 cut(s) 142, 328, 345, 357, 472
SchI GAGTC 1 cut(s) 231
SduI GDGCHC 1 cut(s) 629
SetI ASST 8 cut(s) 26, 32, 151, 390, 468, 629, 740, 752
SfaNI GCATC 1 cut(s) 582
SfuI TTCGAA 1 cut(s) 66
SgrAI CRCCGGYG 1 cut(s) 89
SphI GCATGC 1 cut(s) 114
Sse9I AATT 6 cut(s) 243, 304, 368, 501, 560, 647
SsiI CCGC 2 cut(s) 362, 365
SspMI CTAG 3 cut(s) 326, 389, 528
SstI GAGCTC 1 cut(s) 629
TaaI ACNGT 1 cut(s) 375
TaiI ACGT 2 cut(s) 26, 468
TaqI TCGA 4 cut(s) 66, 471, 581, 692
TasI AATT 6 cut(s) 243, 304, 368, 501, 560, 647
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 4 cut(s) 121, 574, 583, 729
Tru1I TTAA 6 cut(s) 260, 384, 399, 461, 533, 618
Tru9I TTAA 6 cut(s) 260, 384, 399, 461, 533, 618
TscAI CASTG 1 cut(s) 760
TseFI GTSAC 3 cut(s) 85, 92, 818
Tsp45I GTSAC 3 cut(s) 85, 92, 818
TspDTI ATGAA 3 cut(s) 172, 206, 689
TspGWI ACGGA 7 cut(s) 116, 149, 266, 282, 495, 615, 651
TspRI CASTG 1 cut(s) 760
XapI RAATTY 2 cut(s) 243, 501
XceI RCATGY 1 cut(s) 114
XspI CTAG 3 cut(s) 326, 389, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.