Rmu_sc0004830.1_g000001
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004830.1
OG0013008
Physical Location & Seq
Forward (+)
3565 .. 4431
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004830.1_g000001.1.cds

Sequence Viewer

Length: 867 bp
atgggtggtggttgtggttggagaagtagtagtactagtagtagtagtaatagtttctgtcatgtctttcttctagttgtgactctgttttgcggcgcggttttccggcagagcctatcagatccgagcgacgaggcatgtctaacccacctgagccaatccctccaagacccgaaccactcgttacagaactggaccaaatccaccttcgccaacccatgtagcggcttcacctcttatctccaaggcgccacctgcaacaatggccgaatctacaagctctctctcaccaacctttctctgcgcggctccatcacaccttttctcgccaattgcaccaatctccagtccctcgatttgtcttcgaacttcatcgccggcccaatcccgcctgagctacagtccctggtcaacctcgccgtccttaacctctcgtcgaacaggttatccggcccgattccgccgcagctcacattgtgtgcttacctcaacgtcatcgacctccaccagaaccttctcaccggcacgattccccagcagctgggtctgctcgtgaggctctcggcgtttgacgtcagcaacaacaagctttcgggtccgattccgagttctcttggcaaccggagcgggagcctgccgagattcaatgcgacgtcgtttaccgggaacaaggacctttatgggtaccctttgccgcctatgaaaaccaaagggctttcggttctggccattgttgggatcggattggggagtgggttagcgagcttggtgcttagcttcactggggtttgtatatggctgaaaatcacagaaaggaagatggctcttgaagaaggcaagatcacccagctcatgcctgattattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

288

Amino Acids

30.76

Weight (kDa)

8.75

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49750 AT3G49750 AT5G65830
fragaria_vesca FvH4_1g18280
malus_domestica MD02G1190100.v1.1 MD15G1301200.v1.1
prunus_persica Prupe.6G216300_v2.0.a1
pyrus_communis pycom15g26380
rosa_chinensis RchiOBHm_Chr2g0108871
rosa_laevigata RLG00000017693
rosa_multiflora Rmu_sc0004830.1_g000001
rosa_roxburghii Rroxscaffold_2G00134760
rosa_rugosa Rorug02G0156500
rosa_samantha Rh2AG206900 Rh2BG218100 Rh2CG210100 Rh2DG213200
rosa_wichuraiana Rw2G016440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 263
AatII GACGTC 2 cut(s) 576, 656
Acc36I ACCTGC 1 cut(s) 263
Acc65I GGTACC 1 cut(s) 684
AccB1I GGYRCC 2 cut(s) 248, 684
AccB7I CCANNNNNTGG 1 cut(s) 541
AccBSI CCGCTC 1 cut(s) 627
AccII CGCG 2 cut(s) 98, 306
AciI CCGC 9 cut(s) 93, 98, 225, 306, 389, 461, 464, 627, 695
AclWI GGATC 2 cut(s) 116, 746
AcoI YGGCCR 2 cut(s) 265, 726
AcyI GRCGYC 3 cut(s) 249, 573, 653
AdeI CACNNNGTG 1 cut(s) 477
AfaI GTAC 2 cut(s) 34, 686
AfiI CCNNNNNNNGG 3 cut(s) 224, 541, 735
AgsI TTSAA 2 cut(s) 646, 830
AhlI ACTAGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 405
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
AluBI AGCT 8 cut(s) 280, 397, 469, 541, 589, 765, 777, 850
AluI AGCT 8 cut(s) 280, 397, 469, 541, 589, 765, 777, 850
AlwI GGATC 2 cut(s) 116, 746
AlwNI CAGNNNCTG 2 cut(s) 406, 541
AoxI GGCC 4 cut(s) 265, 379, 451, 726
ApeKI GCWGC 2 cut(s) 466, 538
Asp718I GGTACC 1 cut(s) 684
AspLEI GCGC 3 cut(s) 98, 251, 306
AspS9I GGNCC 5 cut(s) 195, 380, 452, 596, 673
AsuC2I CCSGG 1 cut(s) 664
AsuHPI GGTGA 4 cut(s) 223, 280, 511, 835
AsuII TTCGAA 1 cut(s) 365
AvaII GGWCC 3 cut(s) 195, 596, 673
BalI TGGCCA 1 cut(s) 728
BanI GGYRCC 2 cut(s) 248, 684
BarI GAAGNNNNNNTAC 2 cut(s) 16, 48
BauI CACGAG 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 478, 550
BccI CCATC 2 cut(s) 320, 814
BceAI ACGGC 1 cut(s) 404
BcgI CGANNNNNNTGC 2 cut(s) 751, 785
BciT130I CCWGG 1 cut(s) 407
BcnI CCSGG 1 cut(s) 664
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 2 cut(s) 36, 74
BfmI CTRYAG 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 7 cut(s) 94, 226, 307, 464, 467, 539, 695
BlpI GCTNAGC 1 cut(s) 773
BlsI GCNGC 7 cut(s) 95, 227, 308, 465, 468, 540, 696
BmcAI AGTACT 1 cut(s) 34
Bme1390I CCNGG 2 cut(s) 407, 664
Bme18I GGWCC 3 cut(s) 195, 596, 673
BmgT120I GGNCC 5 cut(s) 195, 380, 452, 596, 673
BmiI GGNNCC 5 cut(s) 250, 310, 597, 632, 686
BmrFI CCNGG 2 cut(s) 407, 664
BmrI ACTGGG 1 cut(s) 792
BmuI ACTGGG 1 cut(s) 792
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 2 cut(s) 152, 393
Bpu1102I GCTNAGC 1 cut(s) 773
Bpu14I TTCGAA 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 664
BsaHI GRCGYC 3 cut(s) 249, 573, 653
BsaJI CCNNGG 2 cut(s) 244, 405
BsaWI WCCGGW 1 cut(s) 621
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 541, 735
Bse118I RCCGGY 2 cut(s) 377, 521
Bse1I ACTGG 3 cut(s) 197, 346, 787
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 2 cut(s) 244, 405
BseLI CCNNNNNNNGG 3 cut(s) 224, 541, 735
BseMII CTCAG 2 cut(s) 143, 384
BseNI ACTGG 3 cut(s) 197, 346, 787
BseXI GCAGC 2 cut(s) 478, 550
BseYI CCCAGC 3 cut(s) 534, 541, 846
Bsh1236I CGCG 2 cut(s) 98, 306
BshFI GGCC 4 cut(s) 267, 381, 453, 728
BshNI GGYRCC 2 cut(s) 248, 684
BsiSI CCGG 6 cut(s) 106, 378, 450, 522, 622, 663
BslFI GGGAC 2 cut(s) 334, 388
BslI CCNNNNNNNGG 3 cut(s) 224, 541, 735
BsmFI GGGAC 2 cut(s) 334, 388
BsnI GGCC 4 cut(s) 267, 381, 453, 728
Bsp119I TTCGAA 1 cut(s) 365
Bsp143I GATC 3 cut(s) 121, 738, 840
Bsp1720I GCTNAGC 1 cut(s) 773
BspACI CCGC 9 cut(s) 93, 98, 225, 306, 389, 461, 464, 627, 695
BspANI GGCC 4 cut(s) 267, 381, 453, 728
BspCNI CTCAG 2 cut(s) 144, 385
BspFNI CGCG 2 cut(s) 98, 306
BspLI GGNNCC 5 cut(s) 250, 310, 597, 632, 686
BspMI ACCTGC 1 cut(s) 263
BspPI GGATC 2 cut(s) 116, 746
BspT104I TTCGAA 1 cut(s) 365
BspT107I GGYRCC 2 cut(s) 248, 684
BsrBI CCGCTC 1 cut(s) 627
BsrFI RCCGGY 2 cut(s) 377, 521
BsrI ACTGG 3 cut(s) 197, 346, 787
BssAI RCCGGY 2 cut(s) 377, 521
BssECI CCNNGG 2 cut(s) 244, 405
BssMI GATC 3 cut(s) 121, 738, 840
BssNI GRCGYC 3 cut(s) 249, 573, 653
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 244
Bst2BI CACGAG 1 cut(s) 551
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 402
BstACI GRCGYC 3 cut(s) 249, 573, 653
BstBI TTCGAA 1 cut(s) 365
BstC8I GCNNGC 3 cut(s) 379, 635, 763
BstDEI CTNAG 3 cut(s) 152, 393, 773
BstFNI CGCG 2 cut(s) 98, 306
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 3 cut(s) 98, 251, 306
BstKTI GATC 3 cut(s) 124, 741, 843
BstMBI GATC 3 cut(s) 121, 738, 840
BstMWI GCNNNNNNNGC 5 cut(s) 255, 264, 547, 556, 624
BstNI CCWGG 1 cut(s) 407
BstNSI RCATGY 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 405, 662
BstSFI CTRYAG 1 cut(s) 398
BstUI CGCG 2 cut(s) 98, 306
BstV1I GCAGC 2 cut(s) 478, 550
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 4 cut(s) 267, 381, 453, 728
BtgZI GCGATG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 780
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 3 cut(s) 379, 635, 763
CaiI CAGNNNCTG 2 cut(s) 406, 541
CfoI GCGC 3 cut(s) 98, 251, 306
Cfr10I RCCGGY 2 cut(s) 377, 521
Cfr13I GGNCC 5 cut(s) 195, 380, 452, 596, 673
Csp6I GTAC 2 cut(s) 33, 685
CviAII CATG 4 cut(s) 62, 138, 219, 853
CviQI GTAC 2 cut(s) 33, 685
DdeI CTNAG 3 cut(s) 152, 393, 773
DinI GGCGCC 1 cut(s) 250
DpnI GATC 3 cut(s) 123, 740, 842
DpnII GATC 3 cut(s) 121, 738, 840
DraIII CACNNNGTG 1 cut(s) 477
EaeI YGGCCR 2 cut(s) 265, 726
EciI GGCGGA 1 cut(s) 450
Eco130I CCWWGG 1 cut(s) 244
Eco47I GGWCC 3 cut(s) 195, 596, 673
EcoO109I RGGNCCY 1 cut(s) 673
EcoRII CCWGG 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 244
EgeI GGCGCC 1 cut(s) 250
EheI GGCGCC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 65, 141, 222, 856
FaiI YATR 8 cut(s) 63, 139, 220, 681, 701, 794, 796, 854
FaqI GGGAC 2 cut(s) 334, 388
FatI CATG 4 cut(s) 61, 137, 218, 852
FauI CCCGC 2 cut(s) 396, 620
Fnu4HI GCNGC 7 cut(s) 94, 226, 307, 464, 467, 539, 695
Fsp4HI GCNGC 7 cut(s) 94, 226, 307, 464, 467, 539, 695
FspBI CTAG 2 cut(s) 36, 74
GlaI GCGC 3 cut(s) 97, 250, 305
GluI GCNGC 7 cut(s) 94, 226, 307, 464, 467, 539, 695
GsaI CCCAGC 3 cut(s) 538, 545, 850
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 4 cut(s) 267, 381, 453, 728
HapII CCGG 6 cut(s) 106, 378, 450, 522, 622, 663
HhaI GCGC 3 cut(s) 98, 251, 306
Hin1I GRCGYC 3 cut(s) 249, 573, 653
Hin1II CATG 4 cut(s) 65, 141, 222, 856
Hin6I GCGC 3 cut(s) 96, 249, 304
HinP1I GCGC 3 cut(s) 96, 249, 304
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 6 cut(s) 82, 270, 457, 529, 601, 642
HpaII CCGG 6 cut(s) 106, 378, 450, 522, 622, 663
HphI GGTGA 4 cut(s) 223, 280, 511, 835
Hpy166II GTNNAC 2 cut(s) 412, 660
Hpy188I TCNGA 5 cut(s) 121, 126, 600, 606, 743
Hpy188III TCNNGA 2 cut(s) 553, 827
Hpy8I GTNNAC 2 cut(s) 412, 660
Hpy99I CGWCG 4 cut(s) 134, 439, 655, 658
HpyAV CCTTC 3 cut(s) 217, 524, 827
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4IV ACGT 3 cut(s) 492, 573, 653
HpyCH4V TGCA 2 cut(s) 258, 336
HpyF10VI GCNNNNNNNGC 5 cut(s) 255, 264, 547, 556, 624
HpyF3I CTNAG 3 cut(s) 152, 393, 773
HpySE526I ACGT 3 cut(s) 492, 573, 653
Hsp92I GRCGYC 3 cut(s) 249, 573, 653
Hsp92II CATG 4 cut(s) 65, 141, 222, 856
HspAI GCGC 3 cut(s) 96, 249, 304
KasI GGCGCC 1 cut(s) 248
KpnI GGTACC 1 cut(s) 688
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 121, 738, 840
LmnI GCTCC 3 cut(s) 314, 624, 630
Lsp1109I GCAGC 2 cut(s) 478, 550
MaeI CTAG 2 cut(s) 36, 74
MaeII ACGT 3 cut(s) 492, 573, 653
MaeIII GTNAC 2 cut(s) 79, 183
MalI GATC 3 cut(s) 123, 740, 842
MbiI CCGCTC 1 cut(s) 627
MboI GATC 3 cut(s) 121, 738, 840
MboII GAAGA 4 cut(s) 62, 354, 829, 842
MfeI CAATTG 1 cut(s) 331
MflI RGATCY 1 cut(s) 121
MlsI TGGCCA 1 cut(s) 728
MluCI AATT 1 cut(s) 331
MluNI TGGCCA 1 cut(s) 728
Mly113I GGCGCC 1 cut(s) 249
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 9 cut(s) 127, 173, 244, 362, 425, 440, 497, 512, 549
Mox20I TGGCCA 1 cut(s) 728
MroNI GCCGGC 1 cut(s) 377
MscI TGGCCA 1 cut(s) 728
MseI TTAA 1 cut(s) 426
Msp20I TGGCCA 1 cut(s) 728
MspA1I CMGCKG 1 cut(s) 541
MspI CCGG 6 cut(s) 106, 378, 450, 522, 622, 663
MspR9I CCNGG 2 cut(s) 407, 664
MunI CAATTG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 2 cut(s) 98, 306
MwoI GCNNNNNNNGC 5 cut(s) 255, 264, 547, 556, 624
NaeI GCCGGC 1 cut(s) 379
NarI GGCGCC 1 cut(s) 249
NciI CCSGG 1 cut(s) 664
NdeII GATC 3 cut(s) 121, 738, 840
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 4 cut(s) 65, 141, 222, 856
NlaIV GGNNCC 5 cut(s) 250, 310, 597, 632, 686
NmeAIII GCCGAG 2 cut(s) 542, 663
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 141
NspV TTCGAA 1 cut(s) 365
PaqCI CACCTGC 1 cut(s) 263
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 5 cut(s) 270, 457, 529, 601, 642
PflMI CCANNNNNTGG 1 cut(s) 541
PkrI GCNGC 7 cut(s) 95, 227, 308, 465, 468, 540, 696
PleI GAGTC 1 cut(s) 76
PluTI GGCGCC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 673
Psp5II RGGWCCY 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 405
PspFI CCCAGC 3 cut(s) 534, 541, 846
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 5 cut(s) 250, 310, 597, 632, 686
PspPI GGNCC 5 cut(s) 195, 380, 452, 596, 673
PspPPI RGGWCCY 1 cut(s) 673
PstNI CAGNNNCTG 2 cut(s) 406, 541
PsuI RGATCY 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 541
RsaI GTAC 2 cut(s) 34, 686
RsaNI GTAC 2 cut(s) 33, 685
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 7 cut(s) 94, 226, 307, 464, 467, 539, 695
Sau3AI GATC 3 cut(s) 121, 738, 840
Sau96I GGNCC 5 cut(s) 195, 380, 452, 596, 673
ScaI AGTACT 1 cut(s) 34
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 407, 664
SfcI CTRYAG 1 cut(s) 398
SfoI GGCGCC 1 cut(s) 250
SfuI TTCGAA 1 cut(s) 365
SinI GGWCC 3 cut(s) 195, 596, 673
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 1 cut(s) 331
SsiI CCGC 9 cut(s) 93, 98, 225, 306, 389, 461, 464, 627, 695
SspDI GGCGCC 1 cut(s) 248
SspMI CTAG 2 cut(s) 36, 74
StyD4I CCNGG 2 cut(s) 405, 662
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 402
TaiI ACGT 3 cut(s) 495, 576, 656
TaqI TCGA 4 cut(s) 354, 365, 437, 498
TasI AATT 1 cut(s) 331
TatI WGTACW 1 cut(s) 32
TauI GCSGC 5 cut(s) 96, 228, 309, 466, 697
TfiI GAWTC 5 cut(s) 270, 457, 529, 601, 642
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 787
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 2 cut(s) 466, 538
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 361, 716
TspRI CASTG 1 cut(s) 787
Van91I CCANNNNNTGG 1 cut(s) 541
VpaK11BI GGWCC 3 cut(s) 195, 596, 673
XceI RCATGY 1 cut(s) 141
XspI CTAG 2 cut(s) 36, 74
ZraI GACGTC 2 cut(s) 574, 654
ZrmI AGTACT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.