Rroxscaffold_2G00134760
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013008
Physical Location & Seq
Reverse (-)
72285809 .. 72286678
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134760.1

Sequence Viewer

Length: 870 bp
ATGGGTGGTGGTTGTGGTTGGAGAAGTAGTAGTAGTAATAGTAGTAGTAGTAGTAGTTCCTGTCATGTCTTTCTTCTAGTTGTGACTCTGTTTTGCGGCGCGGTCTTCCGGCAGAGCCTATCAGATCCGAGCGACGAGGCATGCCTAACCCACCTGAGCCAATCCCTCCAAGACCCGAACCACTCGTTACAGAACTGGACCAAATCCACCTTCGCCAACCCATGTAGCGGCTTCACCTCTTATCTCCAAGGCGCCACCTGCAACAATGGCCGAATCTACAAGCTCTCTCTCACCAACCTCTCTCTGCGCGGCTCCATCACACCTTTTCTCGCCAATTGCACCAATCTCCAGTCCCTCGATTTGTCTTCGAACTTCATCGCCGGCCCAATCCCGCCTGAGCTACAGTCCCTGGTCAACCTCGCCGTCCTTAACCTCTCTTCGAACAGGTTATCCGGCCCGATTCCGCCGCAGCTCACATTGTGTGCTTACCTCAACGTCATCGACCTCCACCAGAACCTTCTCACCGGCACGATTCCCCAGCAGCTGGGTCTGCTCGTGAGGCTGTCGGCGTTTGACGTCAGCAACAACAAGCTTTCGGGTCCGATTCCGAGTTCTCTTGGCAACCGGAGCGGGAGCCTGCCGAGATTCAATGCGACGTCGTTTGCCGGGAACAAGGACCTTTATGGGTACCCTTTGCCGCCTATGAAAACCAAAGGGCTTTCGGTTCTGGCCATTGTTGGGATCGGATTGGGGAGTGGGTTAGCGAGCTTGGTGCTTAGCTTCACTGGGGTTTGTATATGGCTGAAAATCACAGAACGGAAGATGGCTCTTGAAGAAGGCAAGATCACCCAGCTCATGCCTGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

289

Amino Acids

30.74

Weight (kDa)

8.75

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49750 AT3G49750 AT5G65830
fragaria_vesca FvH4_1g18280
malus_domestica MD02G1190100.v1.1 MD15G1301200.v1.1
prunus_persica Prupe.6G216300_v2.0.a1
pyrus_communis pycom15g26380
rosa_chinensis RchiOBHm_Chr2g0108871
rosa_laevigata RLG00000017693
rosa_multiflora Rmu_sc0004830.1_g000001
rosa_roxburghii Rroxscaffold_2G00134760
rosa_rugosa Rorug02G0156500
rosa_samantha Rh2AG206900 Rh2BG218100 Rh2CG210100 Rh2DG213200
rosa_wichuraiana Rw2G016440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 266
AatII GACGTC 2 cut(s) 579, 659
Acc36I ACCTGC 1 cut(s) 266
Acc65I GGTACC 1 cut(s) 687
AccB1I GGYRCC 2 cut(s) 251, 687
AccB7I CCANNNNNTGG 1 cut(s) 544
AccBSI CCGCTC 1 cut(s) 630
AccII CGCG 2 cut(s) 101, 309
AciI CCGC 9 cut(s) 96, 101, 228, 309, 392, 464, 467, 630, 698
AclWI GGATC 2 cut(s) 119, 749
AcoI YGGCCR 2 cut(s) 268, 729
AcyI GRCGYC 3 cut(s) 252, 576, 656
AdeI CACNNNGTG 1 cut(s) 480
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 3 cut(s) 227, 544, 738
AgsI TTSAA 2 cut(s) 649, 833
AjnI CCWGG 1 cut(s) 408
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AloI GAACNNNNNNTCC 2 cut(s) 434, 466
AluBI AGCT 8 cut(s) 283, 400, 472, 544, 592, 768, 780, 853
AluI AGCT 8 cut(s) 283, 400, 472, 544, 592, 768, 780, 853
AlwI GGATC 2 cut(s) 119, 749
AlwNI CAGNNNCTG 2 cut(s) 409, 544
AoxI GGCC 4 cut(s) 268, 382, 454, 729
ApeKI GCWGC 2 cut(s) 469, 541
Asp718I GGTACC 1 cut(s) 687
AspLEI GCGC 3 cut(s) 101, 254, 309
AspS9I GGNCC 5 cut(s) 198, 383, 455, 599, 676
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 4 cut(s) 226, 283, 514, 838
AsuII TTCGAA 2 cut(s) 368, 440
AvaII GGWCC 3 cut(s) 198, 599, 676
BalI TGGCCA 1 cut(s) 731
BanI GGYRCC 2 cut(s) 251, 687
BauI CACGAG 1 cut(s) 554
BbsI GAAGAC 2 cut(s) 97, 357
BbvI GCAGC 2 cut(s) 481, 553
BccI CCATC 2 cut(s) 323, 817
BceAI ACGGC 1 cut(s) 407
BcgI CGANNNNNNTGC 2 cut(s) 754, 788
BciT130I CCWGG 1 cut(s) 410
BcnI CCSGG 1 cut(s) 667
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 266
BisI GCNGC 7 cut(s) 97, 229, 310, 467, 470, 542, 698
BlpI GCTNAGC 1 cut(s) 776
BlsI GCNGC 7 cut(s) 98, 230, 311, 468, 471, 543, 699
Bme1390I CCNGG 2 cut(s) 410, 667
Bme18I GGWCC 3 cut(s) 198, 599, 676
BmgT120I GGNCC 5 cut(s) 198, 383, 455, 599, 676
BmiI GGNNCC 5 cut(s) 253, 313, 600, 635, 689
BmrFI CCNGG 2 cut(s) 410, 667
BmrI ACTGGG 1 cut(s) 795
BmuI ACTGGG 1 cut(s) 795
BpiI GAAGAC 2 cut(s) 97, 357
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 2 cut(s) 155, 396
Bpu1102I GCTNAGC 1 cut(s) 776
Bpu14I TTCGAA 2 cut(s) 368, 440
BpuMI CCSGG 1 cut(s) 667
BsaHI GRCGYC 3 cut(s) 252, 576, 656
BsaJI CCNNGG 2 cut(s) 247, 408
BsaWI WCCGGW 1 cut(s) 624
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 544, 738
Bse118I RCCGGY 2 cut(s) 380, 524
Bse1I ACTGG 3 cut(s) 200, 349, 790
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 247, 408
BseLI CCNNNNNNNGG 3 cut(s) 227, 544, 738
BseMII CTCAG 2 cut(s) 146, 387
BseNI ACTGG 3 cut(s) 200, 349, 790
BseXI GCAGC 2 cut(s) 481, 553
BseYI CCCAGC 3 cut(s) 537, 544, 849
Bsh1236I CGCG 2 cut(s) 101, 309
BshFI GGCC 4 cut(s) 270, 384, 456, 731
BshNI GGYRCC 2 cut(s) 251, 687
BsiSI CCGG 6 cut(s) 109, 381, 453, 525, 625, 666
BslFI GGGAC 2 cut(s) 337, 391
BslI CCNNNNNNNGG 3 cut(s) 227, 544, 738
BsmFI GGGAC 2 cut(s) 337, 391
BsnI GGCC 4 cut(s) 270, 384, 456, 731
Bsp119I TTCGAA 2 cut(s) 368, 440
Bsp143I GATC 3 cut(s) 124, 741, 843
Bsp1720I GCTNAGC 1 cut(s) 776
BspACI CCGC 9 cut(s) 96, 101, 228, 309, 392, 464, 467, 630, 698
BspANI GGCC 4 cut(s) 270, 384, 456, 731
BspCNI CTCAG 2 cut(s) 147, 388
BspFNI CGCG 2 cut(s) 101, 309
BspLI GGNNCC 5 cut(s) 253, 313, 600, 635, 689
BspMI ACCTGC 1 cut(s) 266
BspPI GGATC 2 cut(s) 119, 749
BspT104I TTCGAA 2 cut(s) 368, 440
BspT107I GGYRCC 2 cut(s) 251, 687
BsrBI CCGCTC 1 cut(s) 630
BsrFI RCCGGY 2 cut(s) 380, 524
BsrI ACTGG 3 cut(s) 200, 349, 790
BssAI RCCGGY 2 cut(s) 380, 524
BssECI CCNNGG 2 cut(s) 247, 408
BssMI GATC 3 cut(s) 124, 741, 843
BssNI GRCGYC 3 cut(s) 252, 576, 656
BssSI CACGAG 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 247
Bst2BI CACGAG 1 cut(s) 554
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 405
Bst6I CTCTTC 1 cut(s) 442
BstACI GRCGYC 3 cut(s) 252, 576, 656
BstBI TTCGAA 2 cut(s) 368, 440
BstC8I GCNNGC 4 cut(s) 142, 382, 638, 766
BstDEI CTNAG 3 cut(s) 155, 396, 776
BstFNI CGCG 2 cut(s) 101, 309
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 3 cut(s) 101, 254, 309
BstKTI GATC 3 cut(s) 127, 744, 846
BstMBI GATC 3 cut(s) 124, 741, 843
BstMWI GCNNNNNNNGC 5 cut(s) 258, 267, 550, 559, 627
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 408, 665
BstSFI CTRYAG 1 cut(s) 401
BstUI CGCG 2 cut(s) 101, 309
BstV1I GCAGC 2 cut(s) 481, 553
BstV2I GAAGAC 2 cut(s) 97, 357
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 4 cut(s) 270, 384, 456, 731
BtgZI GCGATG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 783
BveI ACCTGC 1 cut(s) 266
Cac8I GCNNGC 4 cut(s) 142, 382, 638, 766
CaiI CAGNNNCTG 2 cut(s) 409, 544
CfoI GCGC 3 cut(s) 101, 254, 309
Cfr10I RCCGGY 2 cut(s) 380, 524
Cfr13I GGNCC 5 cut(s) 198, 383, 455, 599, 676
Csp6I GTAC 1 cut(s) 688
CviAII CATG 4 cut(s) 65, 141, 222, 856
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 3 cut(s) 155, 396, 776
DinI GGCGCC 1 cut(s) 253
DpnI GATC 3 cut(s) 126, 743, 845
DpnII GATC 3 cut(s) 124, 741, 843
DraIII CACNNNGTG 1 cut(s) 480
EaeI YGGCCR 2 cut(s) 268, 729
Eam1104I CTCTTC 1 cut(s) 442
EarI CTCTTC 1 cut(s) 442
EciI GGCGGA 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 247
Eco47I GGWCC 3 cut(s) 198, 599, 676
EcoO109I RGGNCCY 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 247
EgeI GGCGCC 1 cut(s) 253
EheI GGCGCC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 4 cut(s) 68, 144, 225, 859
FaiI YATR 8 cut(s) 66, 142, 223, 684, 704, 797, 799, 857
FaqI GGGAC 2 cut(s) 337, 391
FatI CATG 4 cut(s) 64, 140, 221, 855
FauI CCCGC 2 cut(s) 399, 623
Fnu4HI GCNGC 7 cut(s) 97, 229, 310, 467, 470, 542, 698
Fsp4HI GCNGC 7 cut(s) 97, 229, 310, 467, 470, 542, 698
FspBI CTAG 1 cut(s) 77
GlaI GCGC 3 cut(s) 100, 253, 308
GluI GCNGC 7 cut(s) 97, 229, 310, 467, 470, 542, 698
GsaI CCCAGC 3 cut(s) 541, 548, 853
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 4 cut(s) 270, 384, 456, 731
HapII CCGG 6 cut(s) 109, 381, 453, 525, 625, 666
HhaI GCGC 3 cut(s) 101, 254, 309
Hin1I GRCGYC 3 cut(s) 252, 576, 656
Hin1II CATG 4 cut(s) 68, 144, 225, 859
Hin6I GCGC 3 cut(s) 99, 252, 307
HinP1I GCGC 3 cut(s) 99, 252, 307
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 6 cut(s) 85, 273, 460, 532, 604, 645
HpaII CCGG 6 cut(s) 109, 381, 453, 525, 625, 666
HphI GGTGA 4 cut(s) 226, 283, 514, 838
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 5 cut(s) 124, 129, 603, 609, 746
Hpy188III TCNNGA 2 cut(s) 556, 830
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 3 cut(s) 137, 658, 661
HpyAV CCTTC 3 cut(s) 220, 527, 830
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4IV ACGT 3 cut(s) 495, 576, 656
HpyCH4V TGCA 2 cut(s) 261, 339
HpyF10VI GCNNNNNNNGC 5 cut(s) 258, 267, 550, 559, 627
HpyF3I CTNAG 3 cut(s) 155, 396, 776
HpySE526I ACGT 3 cut(s) 495, 576, 656
Hsp92I GRCGYC 3 cut(s) 252, 576, 656
Hsp92II CATG 4 cut(s) 68, 144, 225, 859
HspAI GCGC 3 cut(s) 99, 252, 307
KasI GGCGCC 1 cut(s) 251
KpnI GGTACC 1 cut(s) 691
KroI GCCGGC 1 cut(s) 380
KroNI GCCGGC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 124, 741, 843
LmnI GCTCC 3 cut(s) 317, 627, 633
Lsp1109I GCAGC 2 cut(s) 481, 553
MaeI CTAG 1 cut(s) 77
MaeII ACGT 3 cut(s) 495, 576, 656
MaeIII GTNAC 2 cut(s) 82, 186
MalI GATC 3 cut(s) 126, 743, 845
MbiI CCGCTC 1 cut(s) 630
MboI GATC 3 cut(s) 124, 741, 843
MboII GAAGA 6 cut(s) 65, 97, 357, 429, 832, 845
MfeI CAATTG 1 cut(s) 334
MflI RGATCY 1 cut(s) 124
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 1 cut(s) 334
MluNI TGGCCA 1 cut(s) 731
Mly113I GGCGCC 1 cut(s) 252
MlyI GAGTC 1 cut(s) 79
Mox20I TGGCCA 1 cut(s) 731
MroNI GCCGGC 1 cut(s) 380
MscI TGGCCA 1 cut(s) 731
MseI TTAA 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 731
MspA1I CMGCKG 1 cut(s) 544
MspI CCGG 6 cut(s) 109, 381, 453, 525, 625, 666
MspR9I CCNGG 2 cut(s) 410, 667
MunI CAATTG 1 cut(s) 334
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 2 cut(s) 101, 309
MwoI GCNNNNNNNGC 5 cut(s) 258, 267, 550, 559, 627
NaeI GCCGGC 1 cut(s) 382
NarI GGCGCC 1 cut(s) 252
NciI CCSGG 1 cut(s) 667
NdeII GATC 3 cut(s) 124, 741, 843
NgoMIV GCCGGC 1 cut(s) 380
NlaIII CATG 4 cut(s) 68, 144, 225, 859
NlaIV GGNNCC 5 cut(s) 253, 313, 600, 635, 689
NmeAIII GCCGAG 1 cut(s) 666
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 144
NspV TTCGAA 2 cut(s) 368, 440
PaeI GCATGC 1 cut(s) 144
PaqCI CACCTGC 1 cut(s) 266
PdiI GCCGGC 1 cut(s) 382
PfeI GAWTC 5 cut(s) 273, 460, 532, 604, 645
PflMI CCANNNNNTGG 1 cut(s) 544
PkrI GCNGC 7 cut(s) 98, 230, 311, 468, 471, 543, 699
PleI GAGTC 1 cut(s) 79
PluTI GGCGCC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 676
Psp5II RGGWCCY 1 cut(s) 676
Psp6I CCWGG 1 cut(s) 408
PspFI CCCAGC 3 cut(s) 537, 544, 849
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 5 cut(s) 253, 313, 600, 635, 689
PspPI GGNCC 5 cut(s) 198, 383, 455, 599, 676
PspPPI RGGWCCY 1 cut(s) 676
PsrI GAACNNNNNNTAC 2 cut(s) 40, 72
PstNI CAGNNNCTG 2 cut(s) 409, 544
PsuI RGATCY 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 544
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 7 cut(s) 97, 229, 310, 467, 470, 542, 698
Sau3AI GATC 3 cut(s) 124, 741, 843
Sau96I GGNCC 5 cut(s) 198, 383, 455, 599, 676
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 2 cut(s) 410, 667
SfcI CTRYAG 1 cut(s) 401
SfoI GGCGCC 1 cut(s) 253
SfuI TTCGAA 2 cut(s) 368, 440
SinI GGWCC 3 cut(s) 198, 599, 676
SphI GCATGC 1 cut(s) 144
Sse9I AATT 1 cut(s) 334
SsiI CCGC 9 cut(s) 96, 101, 228, 309, 392, 464, 467, 630, 698
SspDI GGCGCC 1 cut(s) 251
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 408, 665
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 405
TaiI ACGT 3 cut(s) 498, 579, 659
TaqI TCGA 4 cut(s) 357, 368, 440, 501
TasI AATT 1 cut(s) 334
TauI GCSGC 5 cut(s) 99, 231, 312, 469, 700
TfiI GAWTC 5 cut(s) 273, 460, 532, 604, 645
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 790
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 469, 541
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 364, 719
TspGWI ACGGA 1 cut(s) 832
TspRI CASTG 1 cut(s) 790
Van91I CCANNNNNTGG 1 cut(s) 544
VpaK11BI GGWCC 3 cut(s) 198, 599, 676
XceI RCATGY 1 cut(s) 144
XspI CTAG 1 cut(s) 77
ZraI GACGTC 2 cut(s) 577, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.