FvH4_1g18280
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013008
Physical Location & Seq
Forward (+)
10646698 .. 10648731
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18280.t1

Sequence Viewer

Length: 855 bp
ATGGGTGGTGGTTGTGTTCGGAGGAGCAGAAGCAGTAGTAGAACTAGAACTAGTTCATGTCGTGTGTTTCTTCTAGTTGTGACTCTGTTGTTCCGGCCAAGCCAATCAGATCCGAGCGACGAGGCATGCCTAACTCATCTAAGCCAATCCCTACAAGACCCGAACCACTCGTTACAGAACTGGACCAAATCCACCTTCGCAAACCCATGTAGCGGCTTCACTTCTTATCTCCAAGGCGCCACTTGCAACAATGGCCGCATCTACAAGCTCTCCCTCACCAACCTCTCTCTCCGTGGCTCCATCACTCCTTTCCTCGCCAACTGCACCAATCTCCAGTCCCTCGATTTGTCTTCCAACTTCATCGCCGGCCCTATCCCGCCGGAGCTTCAGTCTCTTGTCAATCTCGCCGTGCTGAACCTCTCGTCGAACAGATTGTCCGGCCCGATTCCGCCGCAGCTCACATTGTGTGCTTACCTCAACGTCATCGACCTCCACCAGAACCTCCTCACCGGGACCATTCCCCAGCAGCTGGGTCTGCTCGTTCGCCTCTCGGCTTTTGACGTCAGCAACAACAAGCTGTCCGGTCCGATTCCGAGTTCTCTTGGGAACCGGAGCGGGAGCTTGCCGAGATTCAATGCGACGTCATTTGCCGGGAACAAGGACCTTTATGGGTACCCTTTGCCACCTATGAAAGCCAAAGGGCTTTCGGTTCTGGCCATTGTTGGGATCGGATTGGGAAGTGGGCTTGCGAGCTTGGTGCTTAGCTTTACTGGGGTTTGTATATGGCTCAAAATCACAGAAAGAAAAATGGCTCTTGAAGAAGGCAAGATCACTCAGCTTATGCCTGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

285

Amino Acids

30.49

Weight (kDa)

9.43

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49750 AT3G49750 AT5G65830
fragaria_vesca FvH4_1g18280
malus_domestica MD02G1190100.v1.1 MD15G1301200.v1.1
prunus_persica Prupe.6G216300_v2.0.a1
pyrus_communis pycom15g26380
rosa_chinensis RchiOBHm_Chr2g0108871
rosa_laevigata RLG00000017693
rosa_multiflora Rmu_sc0004830.1_g000001
rosa_roxburghii Rroxscaffold_2G00134760
rosa_rugosa Rorug02G0156500
rosa_samantha Rh2AG206900 Rh2BG218100 Rh2CG210100 Rh2DG213200
rosa_wichuraiana Rw2G016440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 564, 644
Acc65I GGTACC 1 cut(s) 672
AccB1I GGYRCC 2 cut(s) 236, 672
AccB7I CCANNNNNTGG 1 cut(s) 529
AccBSI CCGCTC 1 cut(s) 615
AciI CCGC 6 cut(s) 213, 256, 377, 449, 452, 615
AclWI GGATC 2 cut(s) 104, 734
AcoI YGGCCR 3 cut(s) 95, 253, 714
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 3 cut(s) 237, 561, 641
AdeI CACNNNGTG 1 cut(s) 465
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 3 cut(s) 212, 529, 723
AgsI TTSAA 2 cut(s) 634, 818
AhlI ACTAGT 1 cut(s) 50
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
AluBI AGCT 9 cut(s) 268, 385, 457, 529, 577, 621, 753, 765, 838
AluI AGCT 9 cut(s) 268, 385, 457, 529, 577, 621, 753, 765, 838
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 2 cut(s) 104, 734
AlwNI CAGNNNCTG 1 cut(s) 529
AoxI GGCC 5 cut(s) 95, 253, 367, 439, 714
ApeKI GCWGC 2 cut(s) 454, 526
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
Asp700I GAANNNNTTC 1 cut(s) 52
Asp718I GGTACC 1 cut(s) 672
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 6 cut(s) 183, 368, 440, 513, 584, 661
AsuC2I CCSGG 2 cut(s) 511, 652
AsuHPI GGTGA 2 cut(s) 268, 499
AvaII GGWCC 4 cut(s) 183, 513, 584, 661
BalI TGGCCA 1 cut(s) 716
BanI GGYRCC 2 cut(s) 236, 672
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 466, 538
BccI CCATC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 392
BcgI CGANNNNNNTGC 2 cut(s) 739, 773
BcnI CCSGG 2 cut(s) 511, 652
BcoDI GTCTC 1 cut(s) 396
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 3 cut(s) 45, 51, 74
BfoI RGCGCY 1 cut(s) 240
BisI GCNGC 5 cut(s) 214, 256, 452, 455, 527
BlpI GCTNAGC 1 cut(s) 761
BlsI GCNGC 5 cut(s) 215, 257, 453, 456, 528
Bme1390I CCNGG 2 cut(s) 511, 652
Bme18I GGWCC 4 cut(s) 183, 513, 584, 661
BmgT120I GGNCC 6 cut(s) 183, 368, 440, 513, 584, 661
BmiI GGNNCC 5 cut(s) 238, 298, 514, 608, 674
BmrFI CCNGG 2 cut(s) 511, 652
BmrI ACTGGG 1 cut(s) 780
BmsI GCATC 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 780
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 317
Bpu1102I GCTNAGC 1 cut(s) 761
BpuMI CCSGG 2 cut(s) 511, 652
BsaHI GRCGYC 3 cut(s) 237, 561, 641
BsaJI CCNNGG 2 cut(s) 232, 292
BsaWI WCCGGW 2 cut(s) 581, 609
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 374, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 529, 723
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 3 cut(s) 185, 334, 775
BseDI CCNNGG 2 cut(s) 232, 292
BseLI CCNNNNNNNGG 3 cut(s) 212, 529, 723
BseMII CTCAG 1 cut(s) 848
BseNI ACTGG 3 cut(s) 185, 334, 775
BseRI GAGGAG 2 cut(s) 37, 494
BseXI GCAGC 2 cut(s) 466, 538
BseYI CCCAGC 2 cut(s) 522, 529
BsgI GTGCAG 1 cut(s) 307
BshFI GGCC 5 cut(s) 97, 255, 369, 441, 716
BshNI GGYRCC 2 cut(s) 236, 672
BsiSI CCGG 8 cut(s) 94, 366, 380, 438, 510, 582, 610, 651
BslFI GGGAC 2 cut(s) 322, 526
BslI CCNNNNNNNGG 3 cut(s) 212, 529, 723
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 2 cut(s) 322, 526
BsnI GGCC 5 cut(s) 97, 255, 369, 441, 716
Bsp143I GATC 3 cut(s) 109, 726, 828
Bsp1720I GCTNAGC 1 cut(s) 761
BspACI CCGC 6 cut(s) 213, 256, 377, 449, 452, 615
BspANI GGCC 5 cut(s) 97, 255, 369, 441, 716
BspCNI CTCAG 1 cut(s) 847
BspLI GGNNCC 5 cut(s) 238, 298, 514, 608, 674
BspPI GGATC 2 cut(s) 104, 734
BspT107I GGYRCC 2 cut(s) 236, 672
BsrBI CCGCTC 1 cut(s) 615
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 3 cut(s) 185, 334, 775
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 232, 292
BssMI GATC 3 cut(s) 109, 726, 828
BssNI GRCGYC 3 cut(s) 237, 561, 641
BssT1I CCWWGG 1 cut(s) 232
BstACI GRCGYC 3 cut(s) 237, 561, 641
BstC8I GCNNGC 5 cut(s) 127, 367, 623, 747, 751
BstDEI CTNAG 3 cut(s) 140, 761, 834
BstDSI CCRYGG 1 cut(s) 292
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 112, 729, 831
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 3 cut(s) 109, 726, 828
BstMWI GCNNNNNNNGC 3 cut(s) 243, 252, 535
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 509, 650
BstV1I GCAGC 2 cut(s) 466, 538
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 5 cut(s) 97, 255, 369, 441, 716
BtgI CCRYGG 1 cut(s) 292
BtgZI GCGATG 1 cut(s) 346
Cac8I GCNNGC 5 cut(s) 127, 367, 623, 747, 751
CaiI CAGNNNCTG 1 cut(s) 529
CfoI GCGC 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 6 cut(s) 183, 368, 440, 513, 584, 661
CpoI CGGWCCG 1 cut(s) 584
Csp6I GTAC 1 cut(s) 673
CspI CGGWCCG 1 cut(s) 584
CviAII CATG 3 cut(s) 57, 126, 207
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 3 cut(s) 140, 761, 834
DinI GGCGCC 1 cut(s) 238
DpnI GATC 3 cut(s) 111, 728, 830
DpnII GATC 3 cut(s) 109, 726, 828
DraIII CACNNNGTG 1 cut(s) 465
EaeI YGGCCR 3 cut(s) 95, 253, 714
EciI GGCGGA 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 232
Eco47I GGWCC 4 cut(s) 183, 513, 584, 661
Eco57I CTGAAG 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 232
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 3 cut(s) 60, 129, 210
FaiI YATR 8 cut(s) 58, 127, 208, 669, 689, 782, 784, 842
FaqI GGGAC 2 cut(s) 322, 526
FatI CATG 3 cut(s) 56, 125, 206
FauI CCCGC 2 cut(s) 384, 608
Fnu4HI GCNGC 5 cut(s) 214, 256, 452, 455, 527
Fsp4HI GCNGC 5 cut(s) 214, 256, 452, 455, 527
FspBI CTAG 3 cut(s) 45, 51, 74
GlaI GCGC 1 cut(s) 238
GluI GCNGC 5 cut(s) 214, 256, 452, 455, 527
GsaI CCCAGC 2 cut(s) 526, 533
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 5 cut(s) 97, 255, 369, 441, 716
HapII CCGG 8 cut(s) 94, 366, 380, 438, 510, 582, 610, 651
HhaI GCGC 1 cut(s) 239
Hin1I GRCGYC 3 cut(s) 237, 561, 641
Hin1II CATG 3 cut(s) 60, 129, 210
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 4 cut(s) 82, 445, 589, 630
HpaII CCGG 8 cut(s) 94, 366, 380, 438, 510, 582, 610, 651
HphI GGTGA 2 cut(s) 268, 499
Hpy188I TCNGA 6 cut(s) 21, 109, 114, 588, 594, 731
Hpy188III TCNNGA 1 cut(s) 815
Hpy99I CGWCG 3 cut(s) 122, 427, 643
HpyAV CCTTC 2 cut(s) 205, 815
HpyCH4IV ACGT 3 cut(s) 480, 561, 641
HpyCH4V TGCA 2 cut(s) 246, 324
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 252, 535
HpyF3I CTNAG 3 cut(s) 140, 761, 834
HpySE526I ACGT 3 cut(s) 480, 561, 641
Hsp92I GRCGYC 3 cut(s) 237, 561, 641
Hsp92II CATG 3 cut(s) 60, 129, 210
HspAI GCGC 1 cut(s) 237
KasI GGCGCC 1 cut(s) 236
KpnI GGTACC 1 cut(s) 676
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
Kzo9I GATC 3 cut(s) 109, 726, 828
LmnI GCTCC 5 cut(s) 24, 302, 382, 612, 618
Lsp1109I GCAGC 2 cut(s) 466, 538
LweI GCATC 1 cut(s) 267
MaeI CTAG 3 cut(s) 45, 51, 74
MaeII ACGT 3 cut(s) 480, 561, 641
MaeIII GTNAC 2 cut(s) 79, 171
MalI GATC 3 cut(s) 111, 728, 830
MbiI CCGCTC 1 cut(s) 615
MboI GATC 3 cut(s) 109, 726, 828
MboII GAAGA 3 cut(s) 62, 342, 830
MflI RGATCY 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 716
MluNI TGGCCA 1 cut(s) 716
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 378
Mox20I TGGCCA 1 cut(s) 716
MroNI GCCGGC 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 52
MscI TGGCCA 1 cut(s) 716
Msp20I TGGCCA 1 cut(s) 716
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 8 cut(s) 94, 366, 380, 438, 510, 582, 610, 651
MspR9I CCNGG 2 cut(s) 511, 652
MwoI GCNNNNNNNGC 3 cut(s) 243, 252, 535
NaeI GCCGGC 1 cut(s) 367
NarI GGCGCC 1 cut(s) 237
NciI CCSGG 2 cut(s) 511, 652
NdeII GATC 3 cut(s) 109, 726, 828
NgoMIV GCCGGC 1 cut(s) 365
NlaIII CATG 3 cut(s) 60, 129, 210
NlaIV GGNNCC 5 cut(s) 238, 298, 514, 608, 674
NmeAIII GCCGAG 2 cut(s) 530, 651
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 129
PaeI GCATGC 1 cut(s) 129
PdiI GCCGGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 52
PfeI GAWTC 3 cut(s) 445, 589, 630
PflMI CCANNNNNTGG 1 cut(s) 529
PkrI GCNGC 5 cut(s) 215, 257, 453, 456, 528
PleI GAGTC 1 cut(s) 76
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 661
Psp5II RGGWCCY 1 cut(s) 661
PspFI CCCAGC 2 cut(s) 522, 529
PspN4I GGNNCC 5 cut(s) 238, 298, 514, 608, 674
PspPI GGNCC 6 cut(s) 183, 368, 440, 513, 584, 661
PspPPI RGGWCCY 1 cut(s) 661
PstNI CAGNNNCTG 1 cut(s) 529
PsuI RGATCY 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 529
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
Rsr2I CGGWCCG 1 cut(s) 584
RsrII CGGWCCG 1 cut(s) 584
SatI GCNGC 5 cut(s) 214, 256, 452, 455, 527
Sau3AI GATC 3 cut(s) 109, 726, 828
Sau96I GGNCC 6 cut(s) 183, 368, 440, 513, 584, 661
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 511, 652
SfaNI GCATC 1 cut(s) 267
SfoI GGCGCC 1 cut(s) 238
SinI GGWCC 4 cut(s) 183, 513, 584, 661
SpeI ACTAGT 1 cut(s) 50
SphI GCATGC 1 cut(s) 129
SsiI CCGC 6 cut(s) 213, 256, 377, 449, 452, 615
SspDI GGCGCC 1 cut(s) 236
SspMI CTAG 3 cut(s) 45, 51, 74
StyD4I CCNGG 2 cut(s) 509, 650
StyI CCWWGG 1 cut(s) 232
TaiI ACGT 3 cut(s) 483, 564, 644
TaqI TCGA 3 cut(s) 342, 425, 486
TauI GCSGC 3 cut(s) 216, 258, 454
TfiI GAWTC 3 cut(s) 445, 589, 630
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 2 cut(s) 454, 526
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 3 cut(s) 45, 349, 704
TspGWI ACGGA 1 cut(s) 281
Van91I CCANNNNNTGG 1 cut(s) 529
VpaK11BI GGWCC 4 cut(s) 183, 513, 584, 661
XceI RCATGY 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 52
XspI CTAG 3 cut(s) 45, 51, 74
ZraI GACGTC 2 cut(s) 562, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.