Rh2BG218100
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0013008
Physical Location & Seq
Forward (+)
21036800 .. 21039855
3056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG218100.1

Sequence Viewer

Length: 861 bp
ATGGGTGGTGGTTGTGGTTGGAGAAGTAGTAGTAGTAGTAGTAATAGTTTCTGTCATGTCTTTCTTCTAGTTGTGACTCTGTTTTGCGGCGCGGTTTTCCGGCAGAGCCTATCAGATCCGAGCGACGAGGCATGTCTAACCCACCTGAGCCAATCCCTCCAAGACCCGAACCACTCGTTACAGAACTGGACCAAATCCACCTTCGCCAACCCATGTAGCGGCTTCACCTCTTATCTCCAAGGCGCCACCTGCAACAATGGCCGAATCTACAAGCTCTCTCTCACCAACCTCTCTCTGCGCGGCTCCATCACACCTTTTCTCGCCAATTGCACCAATCTCCAGTCCCTCGATTTGTCTTCGAACTTCATCGCTGGCCCAATCCCGCCTGAGCTACAGTCCCTGGTTAACCTCGCCGTCCTTAACCTCTCGTCGAACAGGTTATCCGGCCCGATTCCGCCGCAGCTCACATTGTGTGCTTACCTCAACGTCATCGACCTCCACCAGAACCTTCTCACCGGCACGATTCCCCAGCAGCTGGGTCTGCTCGTGAGGCTCTCGGCGTTTGACGTCAGCAACAACAAGCTTTCGGGTCCGATTCCGAGTTCTCTTGGCAACCGGAGCGGGAGCCTGCCGAGATTCAATGCGACGTCGTTTGCCGGGAACAAGGACCTTTATGGGTACCCTTTGCCGCCTATGAAAACCAAAGGGCTTTCGGTTCTGGCCATTGTTGGGATCGGATTGGGGAGTGGGTTAGCGAGCTTGGTGCTTAGCTTCACTGGGGTTTGTATATGGCTGAAAATCACAGAAAGGAAGATGGCTCTTGAAGAAGGCAAGATCACCCAGCTCATGCCTGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

286

Amino Acids

30.54

Weight (kDa)

8.75

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49750 AT3G49750 AT5G65830
fragaria_vesca FvH4_1g18280
malus_domestica MD02G1190100.v1.1 MD15G1301200.v1.1
prunus_persica Prupe.6G216300_v2.0.a1
pyrus_communis pycom15g26380
rosa_chinensis RchiOBHm_Chr2g0108871
rosa_laevigata RLG00000017693
rosa_multiflora Rmu_sc0004830.1_g000001
rosa_roxburghii Rroxscaffold_2G00134760
rosa_rugosa Rorug02G0156500
rosa_samantha Rh2AG206900 Rh2BG218100 Rh2CG210100 Rh2DG213200
rosa_wichuraiana Rw2G016440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 257
AatII GACGTC 2 cut(s) 570, 650
Acc36I ACCTGC 1 cut(s) 257
Acc65I GGTACC 1 cut(s) 678
AccB1I GGYRCC 2 cut(s) 242, 678
AccB7I CCANNNNNTGG 1 cut(s) 535
AccBSI CCGCTC 1 cut(s) 621
AccII CGCG 2 cut(s) 92, 300
AciI CCGC 9 cut(s) 87, 92, 219, 300, 383, 455, 458, 621, 689
AclWI GGATC 2 cut(s) 110, 740
AcoI YGGCCR 2 cut(s) 259, 720
AcyI GRCGYC 3 cut(s) 243, 567, 647
AdeI CACNNNGTG 1 cut(s) 471
AfaI GTAC 1 cut(s) 680
AfiI CCNNNNNNNGG 3 cut(s) 218, 535, 729
AgsI TTSAA 2 cut(s) 640, 824
AjnI CCWGG 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AloI GAACNNNNNNTCC 2 cut(s) 425, 457
AluBI AGCT 8 cut(s) 274, 391, 463, 535, 583, 759, 771, 844
AluI AGCT 8 cut(s) 274, 391, 463, 535, 583, 759, 771, 844
AlwI GGATC 2 cut(s) 110, 740
AlwNI CAGNNNCTG 2 cut(s) 400, 535
AoxI GGCC 4 cut(s) 259, 373, 445, 720
ApeKI GCWGC 2 cut(s) 460, 532
Asp718I GGTACC 1 cut(s) 678
AspLEI GCGC 3 cut(s) 92, 245, 300
AspS9I GGNCC 5 cut(s) 189, 374, 446, 590, 667
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 4 cut(s) 217, 274, 505, 829
AsuII TTCGAA 1 cut(s) 359
AvaII GGWCC 3 cut(s) 189, 590, 667
BalI TGGCCA 1 cut(s) 722
BanI GGYRCC 2 cut(s) 242, 678
BauI CACGAG 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 472, 544
BccI CCATC 2 cut(s) 314, 808
BceAI ACGGC 1 cut(s) 398
BcgI CGANNNNNNTGC 2 cut(s) 745, 779
BciT130I CCWGG 1 cut(s) 401
BcnI CCSGG 1 cut(s) 658
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 392
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 257
BisI GCNGC 7 cut(s) 88, 220, 301, 458, 461, 533, 689
BlpI GCTNAGC 1 cut(s) 767
BlsI GCNGC 7 cut(s) 89, 221, 302, 459, 462, 534, 690
Bme1390I CCNGG 2 cut(s) 401, 658
Bme18I GGWCC 3 cut(s) 189, 590, 667
BmgT120I GGNCC 5 cut(s) 189, 374, 446, 590, 667
BmiI GGNNCC 5 cut(s) 244, 304, 591, 626, 680
BmrFI CCNGG 2 cut(s) 401, 658
BmrI ACTGGG 1 cut(s) 786
BmuI ACTGGG 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 323
Bpu10I CCTNAGC 2 cut(s) 146, 387
Bpu1102I GCTNAGC 1 cut(s) 767
Bpu14I TTCGAA 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 658
BsaHI GRCGYC 3 cut(s) 243, 567, 647
BsaJI CCNNGG 2 cut(s) 238, 399
BsaWI WCCGGW 1 cut(s) 615
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 535, 729
Bse118I RCCGGY 1 cut(s) 515
Bse1I ACTGG 3 cut(s) 191, 340, 781
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 2 cut(s) 238, 399
BseLI CCNNNNNNNGG 3 cut(s) 218, 535, 729
BseMII CTCAG 2 cut(s) 137, 378
BseNI ACTGG 3 cut(s) 191, 340, 781
BseXI GCAGC 2 cut(s) 472, 544
BseYI CCCAGC 3 cut(s) 528, 535, 840
Bsh1236I CGCG 2 cut(s) 92, 300
BshFI GGCC 4 cut(s) 261, 375, 447, 722
BshNI GGYRCC 2 cut(s) 242, 678
BsiSI CCGG 5 cut(s) 100, 444, 516, 616, 657
BslFI GGGAC 2 cut(s) 328, 382
BslI CCNNNNNNNGG 3 cut(s) 218, 535, 729
BsmFI GGGAC 2 cut(s) 328, 382
BsnI GGCC 4 cut(s) 261, 375, 447, 722
Bsp119I TTCGAA 1 cut(s) 359
Bsp143I GATC 3 cut(s) 115, 732, 834
Bsp1720I GCTNAGC 1 cut(s) 767
BspACI CCGC 9 cut(s) 87, 92, 219, 300, 383, 455, 458, 621, 689
BspANI GGCC 4 cut(s) 261, 375, 447, 722
BspCNI CTCAG 2 cut(s) 138, 379
BspFNI CGCG 2 cut(s) 92, 300
BspLI GGNNCC 5 cut(s) 244, 304, 591, 626, 680
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 2 cut(s) 110, 740
BspT104I TTCGAA 1 cut(s) 359
BspT107I GGYRCC 2 cut(s) 242, 678
BsrBI CCGCTC 1 cut(s) 621
BsrFI RCCGGY 1 cut(s) 515
BsrI ACTGG 3 cut(s) 191, 340, 781
BssAI RCCGGY 1 cut(s) 515
BssECI CCNNGG 2 cut(s) 238, 399
BssMI GATC 3 cut(s) 115, 732, 834
BssNI GRCGYC 3 cut(s) 243, 567, 647
BssSI CACGAG 1 cut(s) 545
BssT1I CCWWGG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 545
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 1 cut(s) 396
BstACI GRCGYC 3 cut(s) 243, 567, 647
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 373, 629, 757
BstDEI CTNAG 3 cut(s) 146, 387, 767
BstFNI CGCG 2 cut(s) 92, 300
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 3 cut(s) 92, 245, 300
BstKTI GATC 3 cut(s) 118, 735, 837
BstMBI GATC 3 cut(s) 115, 732, 834
BstMWI GCNNNNNNNGC 5 cut(s) 249, 258, 541, 550, 618
BstNI CCWGG 1 cut(s) 401
BstNSI RCATGY 1 cut(s) 135
BstSCI CCNGG 2 cut(s) 399, 656
BstSFI CTRYAG 1 cut(s) 392
BstUI CGCG 2 cut(s) 92, 300
BstV1I GCAGC 2 cut(s) 472, 544
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 4 cut(s) 261, 375, 447, 722
BtgZI GCGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 774
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 373, 629, 757
CaiI CAGNNNCTG 2 cut(s) 400, 535
CfoI GCGC 3 cut(s) 92, 245, 300
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 5 cut(s) 189, 374, 446, 590, 667
Csp6I GTAC 1 cut(s) 679
CviAII CATG 4 cut(s) 56, 132, 213, 847
CviQI GTAC 1 cut(s) 679
DdeI CTNAG 3 cut(s) 146, 387, 767
DinI GGCGCC 1 cut(s) 244
DpnI GATC 3 cut(s) 117, 734, 836
DpnII GATC 3 cut(s) 115, 732, 834
DraIII CACNNNGTG 1 cut(s) 471
EaeI YGGCCR 2 cut(s) 259, 720
EciI GGCGGA 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 238
Eco47I GGWCC 3 cut(s) 189, 590, 667
EcoO109I RGGNCCY 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 399
EcoT14I CCWWGG 1 cut(s) 238
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 4 cut(s) 59, 135, 216, 850
FaiI YATR 8 cut(s) 57, 133, 214, 675, 695, 788, 790, 848
FaqI GGGAC 2 cut(s) 328, 382
FatI CATG 4 cut(s) 55, 131, 212, 846
FauI CCCGC 2 cut(s) 390, 614
Fnu4HI GCNGC 7 cut(s) 88, 220, 301, 458, 461, 533, 689
Fsp4HI GCNGC 7 cut(s) 88, 220, 301, 458, 461, 533, 689
FspBI CTAG 1 cut(s) 68
GlaI GCGC 3 cut(s) 91, 244, 299
GluI GCNGC 7 cut(s) 88, 220, 301, 458, 461, 533, 689
GsaI CCCAGC 3 cut(s) 532, 539, 844
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 4 cut(s) 261, 375, 447, 722
HapII CCGG 5 cut(s) 100, 444, 516, 616, 657
HhaI GCGC 3 cut(s) 92, 245, 300
Hin1I GRCGYC 3 cut(s) 243, 567, 647
Hin1II CATG 4 cut(s) 59, 135, 216, 850
Hin6I GCGC 3 cut(s) 90, 243, 298
HinP1I GCGC 3 cut(s) 90, 243, 298
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 6 cut(s) 76, 264, 451, 523, 595, 636
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 5 cut(s) 100, 444, 516, 616, 657
HphI GGTGA 4 cut(s) 217, 274, 505, 829
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 5 cut(s) 115, 120, 594, 600, 737
Hpy188III TCNNGA 2 cut(s) 547, 821
Hpy8I GTNNAC 1 cut(s) 406
Hpy99I CGWCG 4 cut(s) 128, 433, 649, 652
HpyAV CCTTC 3 cut(s) 211, 518, 821
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4IV ACGT 3 cut(s) 486, 567, 647
HpyCH4V TGCA 2 cut(s) 252, 330
HpyF10VI GCNNNNNNNGC 5 cut(s) 249, 258, 541, 550, 618
HpyF3I CTNAG 3 cut(s) 146, 387, 767
HpySE526I ACGT 3 cut(s) 486, 567, 647
Hsp92I GRCGYC 3 cut(s) 243, 567, 647
Hsp92II CATG 4 cut(s) 59, 135, 216, 850
HspAI GCGC 3 cut(s) 90, 243, 298
KasI GGCGCC 1 cut(s) 242
KpnI GGTACC 1 cut(s) 682
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 3 cut(s) 115, 732, 834
LmnI GCTCC 3 cut(s) 308, 618, 624
Lsp1109I GCAGC 2 cut(s) 472, 544
MaeI CTAG 1 cut(s) 68
MaeII ACGT 3 cut(s) 486, 567, 647
MaeIII GTNAC 2 cut(s) 73, 177
MalI GATC 3 cut(s) 117, 734, 836
MbiI CCGCTC 1 cut(s) 621
MboI GATC 3 cut(s) 115, 732, 834
MboII GAAGA 4 cut(s) 56, 348, 823, 836
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 1 cut(s) 115
MlsI TGGCCA 1 cut(s) 722
MluCI AATT 1 cut(s) 325
MluNI TGGCCA 1 cut(s) 722
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 1 cut(s) 70
Mox20I TGGCCA 1 cut(s) 722
MscI TGGCCA 1 cut(s) 722
MseI TTAA 2 cut(s) 405, 420
Msp20I TGGCCA 1 cut(s) 722
MspA1I CMGCKG 1 cut(s) 535
MspI CCGG 5 cut(s) 100, 444, 516, 616, 657
MspR9I CCNGG 2 cut(s) 401, 658
MunI CAATTG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 2 cut(s) 92, 300
MwoI GCNNNNNNNGC 5 cut(s) 249, 258, 541, 550, 618
NarI GGCGCC 1 cut(s) 243
NciI CCSGG 1 cut(s) 658
NdeII GATC 3 cut(s) 115, 732, 834
NlaIII CATG 4 cut(s) 59, 135, 216, 850
NlaIV GGNNCC 5 cut(s) 244, 304, 591, 626, 680
NmeAIII GCCGAG 2 cut(s) 536, 657
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 1 cut(s) 135
NspV TTCGAA 1 cut(s) 359
PaqCI CACCTGC 1 cut(s) 257
PfeI GAWTC 5 cut(s) 264, 451, 523, 595, 636
PflMI CCANNNNNTGG 1 cut(s) 535
PkrI GCNGC 7 cut(s) 89, 221, 302, 459, 462, 534, 690
PleI GAGTC 1 cut(s) 70
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 667
Psp5II RGGWCCY 1 cut(s) 667
Psp6I CCWGG 1 cut(s) 399
PspFI CCCAGC 3 cut(s) 528, 535, 840
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 5 cut(s) 244, 304, 591, 626, 680
PspPI GGNCC 5 cut(s) 189, 374, 446, 590, 667
PspPPI RGGWCCY 1 cut(s) 667
PstNI CAGNNNCTG 2 cut(s) 400, 535
PsuI RGATCY 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 535
RsaI GTAC 1 cut(s) 680
RsaNI GTAC 1 cut(s) 679
SaqAI TTAA 2 cut(s) 405, 420
SatI GCNGC 7 cut(s) 88, 220, 301, 458, 461, 533, 689
Sau3AI GATC 3 cut(s) 115, 732, 834
Sau96I GGNCC 5 cut(s) 189, 374, 446, 590, 667
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 401, 658
SfcI CTRYAG 1 cut(s) 392
SfoI GGCGCC 1 cut(s) 244
SfuI TTCGAA 1 cut(s) 359
SinI GGWCC 3 cut(s) 189, 590, 667
Sse9I AATT 1 cut(s) 325
SsiI CCGC 9 cut(s) 87, 92, 219, 300, 383, 455, 458, 621, 689
SspDI GGCGCC 1 cut(s) 242
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 399, 656
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 396
TaiI ACGT 3 cut(s) 489, 570, 650
TaqI TCGA 4 cut(s) 348, 359, 431, 492
TasI AATT 1 cut(s) 325
TauI GCSGC 5 cut(s) 90, 222, 303, 460, 691
TfiI GAWTC 5 cut(s) 264, 451, 523, 595, 636
Tru1I TTAA 2 cut(s) 405, 420
Tru9I TTAA 2 cut(s) 405, 420
TscAI CASTG 1 cut(s) 781
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 2 cut(s) 460, 532
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 355, 710
TspRI CASTG 1 cut(s) 781
Van91I CCANNNNNTGG 1 cut(s) 535
VpaK11BI GGWCC 3 cut(s) 189, 590, 667
XceI RCATGY 1 cut(s) 135
XspI CTAG 1 cut(s) 68
ZraI GACGTC 2 cut(s) 568, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.