RLG00000017693
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013008
Physical Location & Seq
Forward (+)
20102225 .. 20103079
855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017693

Sequence Viewer

Length: 855 bp
ATGGGTGGTGGTTGTGGTTGGAGAAGTAGTAGTAGTAGTGGTTTCTGTCATGTCTTTCTTATAGTTGTGACTCTGTTTTGCGGCGCGGTTTTCCGGCAGAGCCTATCAGATCCGAGCGACGAGGCATGTCTAACCCACCTGAGCCAATCCCTCCAAGACCCGAACCACTCGTTACAGAACTGGACCAAATCCACCTTCGCCAACCCATGTAGCGGCTTCACCTCTTATCTACAAGGCGCCACCTGCAACAATGGCCGAATCTACAAGCTCTCTCTCACCAACCTCTCTCTGCGCGGCTCCATCACACCTTTTCTCGCCAATTGCACCAATCTCCAGTCCCTCGATTTGTCTTCGAACTTCATCGCCGGCCCAATCCCGCCTGAGCTACAGTCCCTGGTCAACCTCGCCGTCCTTAACCTCTCGTCGAACAGGTTATCCGGCCCGATTCCGCCGCAGCTCACATTGTGTGCTTACCTCAACGTGATCGACCTGCACCAGAACCTTCTCACCGGCACGATTCCCCAGCAGCTGGGTCTGCTCGTGAGGCTCTCGGCGTTTGACGTCAGCAACAACAAGCTTTCGGGTCCGATTCCGAGTTCTCTTGGCAACCGGAGCGGAAGCCTGCCGAGATTCAATGCGACGTCGTTTGCCGGGAACAAGGACCTTTATGGGTACCCTTTGCCGCCTATGAAAACCAAAGGGCTTTCGGTTCTGGCCATTGTTGGGATCGGATTGGGAAGTGGGTTAGCGAGCTTGGTGCTTAGCTTCACTGGGGTTTGTATATGGCTGAAAATCACAGAAAGGAAGATGGCTCTTGAAGAAGGCAAGATCACCCAGCTCATGCCTGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

285

Amino Acids

30.31

Weight (kDa)

8.75

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49750 AT3G49750 AT5G65830
fragaria_vesca FvH4_1g18280
malus_domestica MD02G1190100.v1.1 MD15G1301200.v1.1
prunus_persica Prupe.6G216300_v2.0.a1
pyrus_communis pycom15g26380
rosa_chinensis RchiOBHm_Chr2g0108871
rosa_laevigata RLG00000017693
rosa_multiflora Rmu_sc0004830.1_g000001
rosa_roxburghii Rroxscaffold_2G00134760
rosa_rugosa Rorug02G0156500
rosa_samantha Rh2AG206900 Rh2BG218100 Rh2CG210100 Rh2DG213200
rosa_wichuraiana Rw2G016440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 251
AatII GACGTC 2 cut(s) 564, 644
Acc36I ACCTGC 2 cut(s) 251, 498
Acc65I GGTACC 1 cut(s) 672
AccB1I GGYRCC 2 cut(s) 236, 672
AccB7I CCANNNNNTGG 1 cut(s) 529
AccBSI CCGCTC 1 cut(s) 615
AccII CGCG 2 cut(s) 86, 294
AciI CCGC 9 cut(s) 81, 86, 213, 294, 377, 449, 452, 615, 683
AclWI GGATC 2 cut(s) 104, 734
AcoI YGGCCR 2 cut(s) 253, 714
AcyI GRCGYC 3 cut(s) 237, 561, 641
AdeI CACNNNGTG 1 cut(s) 465
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 3 cut(s) 212, 529, 723
AgsI TTSAA 2 cut(s) 634, 818
AjnI CCWGG 1 cut(s) 393
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
AluBI AGCT 8 cut(s) 268, 385, 457, 529, 577, 753, 765, 838
AluI AGCT 8 cut(s) 268, 385, 457, 529, 577, 753, 765, 838
AlwI GGATC 2 cut(s) 104, 734
AlwNI CAGNNNCTG 2 cut(s) 394, 529
AoxI GGCC 4 cut(s) 253, 367, 439, 714
ApeKI GCWGC 2 cut(s) 454, 526
Asp718I GGTACC 1 cut(s) 672
AspLEI GCGC 3 cut(s) 86, 239, 294
AspS9I GGNCC 5 cut(s) 183, 368, 440, 584, 661
AsuC2I CCSGG 1 cut(s) 652
AsuHPI GGTGA 4 cut(s) 211, 268, 499, 823
AsuII TTCGAA 1 cut(s) 353
AvaII GGWCC 3 cut(s) 183, 584, 661
BalI TGGCCA 1 cut(s) 716
BanI GGYRCC 2 cut(s) 236, 672
BauI CACGAG 1 cut(s) 539
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 466, 538
BccI CCATC 2 cut(s) 308, 802
BceAI ACGGC 1 cut(s) 392
BcgI CGANNNNNNTGC 2 cut(s) 739, 773
BciT130I CCWGG 1 cut(s) 395
BcnI CCSGG 1 cut(s) 652
BfmI CTRYAG 1 cut(s) 386
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 2 cut(s) 251, 498
BisI GCNGC 7 cut(s) 82, 214, 295, 452, 455, 527, 683
BlpI GCTNAGC 1 cut(s) 761
BlsI GCNGC 7 cut(s) 83, 215, 296, 453, 456, 528, 684
Bme1390I CCNGG 2 cut(s) 395, 652
Bme18I GGWCC 3 cut(s) 183, 584, 661
BmgT120I GGNCC 5 cut(s) 183, 368, 440, 584, 661
BmiI GGNNCC 4 cut(s) 238, 298, 585, 674
BmrFI CCNGG 2 cut(s) 395, 652
BmrI ACTGGG 1 cut(s) 780
BmuI ACTGGG 1 cut(s) 780
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 317
Bpu10I CCTNAGC 2 cut(s) 140, 381
Bpu1102I GCTNAGC 1 cut(s) 761
Bpu14I TTCGAA 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 652
BsaHI GRCGYC 3 cut(s) 237, 561, 641
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 609
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 529, 723
Bse118I RCCGGY 2 cut(s) 365, 509
Bse1I ACTGG 3 cut(s) 185, 334, 775
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 393
BseLI CCNNNNNNNGG 3 cut(s) 212, 529, 723
BseMII CTCAG 2 cut(s) 131, 372
BseNI ACTGG 3 cut(s) 185, 334, 775
BseXI GCAGC 2 cut(s) 466, 538
BseYI CCCAGC 3 cut(s) 522, 529, 834
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 2 cut(s) 86, 294
BshFI GGCC 4 cut(s) 255, 369, 441, 716
BshNI GGYRCC 2 cut(s) 236, 672
BsiSI CCGG 6 cut(s) 94, 366, 438, 510, 610, 651
BslFI GGGAC 2 cut(s) 322, 376
BslI CCNNNNNNNGG 3 cut(s) 212, 529, 723
BsmFI GGGAC 2 cut(s) 322, 376
BsnI GGCC 4 cut(s) 255, 369, 441, 716
Bsp119I TTCGAA 1 cut(s) 353
Bsp143I GATC 4 cut(s) 109, 483, 726, 828
Bsp1720I GCTNAGC 1 cut(s) 761
BspACI CCGC 9 cut(s) 81, 86, 213, 294, 377, 449, 452, 615, 683
BspANI GGCC 4 cut(s) 255, 369, 441, 716
BspCNI CTCAG 2 cut(s) 132, 373
BspFNI CGCG 2 cut(s) 86, 294
BspLI GGNNCC 4 cut(s) 238, 298, 585, 674
BspMI ACCTGC 2 cut(s) 251, 498
BspPI GGATC 2 cut(s) 104, 734
BspT104I TTCGAA 1 cut(s) 353
BspT107I GGYRCC 2 cut(s) 236, 672
BsrBI CCGCTC 1 cut(s) 615
BsrFI RCCGGY 2 cut(s) 365, 509
BsrI ACTGG 3 cut(s) 185, 334, 775
BssAI RCCGGY 2 cut(s) 365, 509
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 4 cut(s) 109, 483, 726, 828
BssNI GRCGYC 3 cut(s) 237, 561, 641
BssSI CACGAG 1 cut(s) 539
Bst2BI CACGAG 1 cut(s) 539
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 390
BstACI GRCGYC 3 cut(s) 237, 561, 641
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 3 cut(s) 367, 623, 751
BstDEI CTNAG 3 cut(s) 140, 381, 761
BstFNI CGCG 2 cut(s) 86, 294
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 3 cut(s) 86, 239, 294
BstKTI GATC 4 cut(s) 112, 486, 729, 831
BstMBI GATC 4 cut(s) 109, 483, 726, 828
BstMWI GCNNNNNNNGC 5 cut(s) 243, 252, 535, 544, 612
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 393, 650
BstSFI CTRYAG 1 cut(s) 386
BstUI CGCG 2 cut(s) 86, 294
BstV1I GCAGC 2 cut(s) 466, 538
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 4 cut(s) 255, 369, 441, 716
BtgZI GCGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 768
BveI ACCTGC 2 cut(s) 251, 498
Cac8I GCNNGC 3 cut(s) 367, 623, 751
CaiI CAGNNNCTG 2 cut(s) 394, 529
CfoI GCGC 3 cut(s) 86, 239, 294
Cfr10I RCCGGY 2 cut(s) 365, 509
Cfr13I GGNCC 5 cut(s) 183, 368, 440, 584, 661
Csp6I GTAC 1 cut(s) 673
CviAII CATG 4 cut(s) 50, 126, 207, 841
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 3 cut(s) 140, 381, 761
DinI GGCGCC 1 cut(s) 238
DpnI GATC 4 cut(s) 111, 485, 728, 830
DpnII GATC 4 cut(s) 109, 483, 726, 828
DraIII CACNNNGTG 1 cut(s) 465
EaeI YGGCCR 2 cut(s) 253, 714
EciI GGCGGA 1 cut(s) 438
Eco47I GGWCC 3 cut(s) 183, 584, 661
EcoO109I RGGNCCY 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 393
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
FaeI CATG 4 cut(s) 53, 129, 210, 844
FaiI YATR 9 cut(s) 51, 62, 127, 208, 669, 689, 782, 784, 842
FaqI GGGAC 2 cut(s) 322, 376
FatI CATG 4 cut(s) 49, 125, 206, 840
FauI CCCGC 1 cut(s) 384
Fnu4HI GCNGC 7 cut(s) 82, 214, 295, 452, 455, 527, 683
Fsp4HI GCNGC 7 cut(s) 82, 214, 295, 452, 455, 527, 683
GlaI GCGC 3 cut(s) 85, 238, 293
GluI GCNGC 7 cut(s) 82, 214, 295, 452, 455, 527, 683
GsaI CCCAGC 3 cut(s) 526, 533, 838
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 4 cut(s) 255, 369, 441, 716
HapII CCGG 6 cut(s) 94, 366, 438, 510, 610, 651
HhaI GCGC 3 cut(s) 86, 239, 294
Hin1I GRCGYC 3 cut(s) 237, 561, 641
Hin1II CATG 4 cut(s) 53, 129, 210, 844
Hin6I GCGC 3 cut(s) 84, 237, 292
HinP1I GCGC 3 cut(s) 84, 237, 292
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 6 cut(s) 70, 258, 445, 517, 589, 630
HpaII CCGG 6 cut(s) 94, 366, 438, 510, 610, 651
HphI GGTGA 4 cut(s) 211, 268, 499, 823
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 5 cut(s) 109, 114, 588, 594, 731
Hpy188III TCNNGA 2 cut(s) 541, 815
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 4 cut(s) 122, 427, 643, 646
HpyAV CCTTC 3 cut(s) 205, 512, 815
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4IV ACGT 3 cut(s) 480, 561, 641
HpyCH4V TGCA 3 cut(s) 246, 324, 493
HpyF10VI GCNNNNNNNGC 5 cut(s) 243, 252, 535, 544, 612
HpyF3I CTNAG 3 cut(s) 140, 381, 761
HpySE526I ACGT 3 cut(s) 480, 561, 641
Hsp92I GRCGYC 3 cut(s) 237, 561, 641
Hsp92II CATG 4 cut(s) 53, 129, 210, 844
HspAI GCGC 3 cut(s) 84, 237, 292
KasI GGCGCC 1 cut(s) 236
KpnI GGTACC 1 cut(s) 676
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
Kzo9I GATC 4 cut(s) 109, 483, 726, 828
LmnI GCTCC 2 cut(s) 302, 612
Lsp1109I GCAGC 2 cut(s) 466, 538
MaeII ACGT 3 cut(s) 480, 561, 641
MaeIII GTNAC 2 cut(s) 67, 171
MalI GATC 4 cut(s) 111, 485, 728, 830
MbiI CCGCTC 1 cut(s) 615
MboI GATC 4 cut(s) 109, 483, 726, 828
MboII GAAGA 3 cut(s) 342, 817, 830
MfeI CAATTG 1 cut(s) 319
MflI RGATCY 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 1 cut(s) 319
MluNI TGGCCA 1 cut(s) 716
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 9 cut(s) 115, 161, 232, 293, 350, 413, 428, 485, 537
Mox20I TGGCCA 1 cut(s) 716
MroNI GCCGGC 1 cut(s) 365
MscI TGGCCA 1 cut(s) 716
MseI TTAA 1 cut(s) 414
Msp20I TGGCCA 1 cut(s) 716
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 6 cut(s) 94, 366, 438, 510, 610, 651
MspR9I CCNGG 2 cut(s) 395, 652
MunI CAATTG 1 cut(s) 319
MvaI CCWGG 1 cut(s) 395
MvnI CGCG 2 cut(s) 86, 294
MwoI GCNNNNNNNGC 5 cut(s) 243, 252, 535, 544, 612
NaeI GCCGGC 1 cut(s) 367
NarI GGCGCC 1 cut(s) 237
NciI CCSGG 1 cut(s) 652
NdeII GATC 4 cut(s) 109, 483, 726, 828
NgoMIV GCCGGC 1 cut(s) 365
NlaIII CATG 4 cut(s) 53, 129, 210, 844
NlaIV GGNNCC 4 cut(s) 238, 298, 585, 674
NmeAIII GCCGAG 2 cut(s) 530, 651
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 129
NspV TTCGAA 1 cut(s) 353
PaqCI CACCTGC 1 cut(s) 251
PdiI GCCGGC 1 cut(s) 367
PfeI GAWTC 5 cut(s) 258, 445, 517, 589, 630
PflMI CCANNNNNTGG 1 cut(s) 529
PkrI GCNGC 7 cut(s) 83, 215, 296, 453, 456, 528, 684
PleI GAGTC 1 cut(s) 64
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 661
Psp5II RGGWCCY 1 cut(s) 661
Psp6I CCWGG 1 cut(s) 393
PspFI CCCAGC 3 cut(s) 522, 529, 834
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 4 cut(s) 238, 298, 585, 674
PspPI GGNCC 5 cut(s) 183, 368, 440, 584, 661
PspPPI RGGWCCY 1 cut(s) 661
PstNI CAGNNNCTG 2 cut(s) 394, 529
PsuI RGATCY 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 529
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 7 cut(s) 82, 214, 295, 452, 455, 527, 683
Sau3AI GATC 4 cut(s) 109, 483, 726, 828
Sau96I GGNCC 5 cut(s) 183, 368, 440, 584, 661
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 395, 652
SfcI CTRYAG 1 cut(s) 386
SfoI GGCGCC 1 cut(s) 238
SfuI TTCGAA 1 cut(s) 353
SinI GGWCC 3 cut(s) 183, 584, 661
Sse9I AATT 1 cut(s) 319
SsiI CCGC 9 cut(s) 81, 86, 213, 294, 377, 449, 452, 615, 683
SspDI GGCGCC 1 cut(s) 236
StyD4I CCNGG 2 cut(s) 393, 650
TaaI ACNGT 1 cut(s) 390
TaiI ACGT 3 cut(s) 483, 564, 644
TaqI TCGA 4 cut(s) 342, 353, 425, 486
TasI AATT 1 cut(s) 319
TauI GCSGC 5 cut(s) 84, 216, 297, 454, 685
TfiI GAWTC 5 cut(s) 258, 445, 517, 589, 630
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 775
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 454, 526
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 349, 704
TspRI CASTG 1 cut(s) 775
Van91I CCANNNNNTGG 1 cut(s) 529
VpaK11BI GGWCC 3 cut(s) 183, 584, 661
XceI RCATGY 1 cut(s) 129
ZraI GACGTC 2 cut(s) 562, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.