AT3G50230
NAC Family

inactive receptor kinase At5g67200

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
18620450 .. 18623251
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50230.1

Sequence Viewer

Length: 1983 bp
ATGACACTCTTCTTCTTCTACTCTCTTCTCTTCCTTCTCCTCCTCCTCCGTATCTCCACCGCCTCTCTCCCGGCGACGAACTACTTCGACTCCTTCTTACCATCCGACGCCGTCGCACTTCTCTCCTTCAAATCCACCGCTGATCTCGACAACAAGCTTCTATACTCTCTCACCGAGCCTTACGACTACTGTCAATGGCGCGGCGTCGATTGCTCTCAAGATCGCGTCGTTCGTCTTATCCTCGACGGTGTTGGTCTCCGGGGAAGTTTCTCACCGGAGACTCTTAGTCGTCTTGATCAGCTTCGTGTTCTTAGCCTTGAGAATAACTCAATCTCGGGTTCGATTCCTGATCTATCTCCTCTCGTCAATCTCAAAACCCTAACCCTAAGCAAGAATGGTTTCTCCGGTACTCTTTCTTCTTCAATTCTCTCTCTTCGTCGGTTAACAGAACTTGATCTATCGTTTAACAACTTCTCCGGTGAGATTCCGTCGGGGATCAATGCTCTGAGTCGACTCAGTTCTTTAAATCTCGAGTTTAATCGACTTAACGGAACTCTCCCGCCGTTAAATCTTTCTTCTCTGATTTCATTTAACGTTTCCAGTAACAACCTCACCGGTTTAGTTCCGTTAACAAAGACTCTGTTACGATTCAACGCGTCTTCGTTTTCGTCAAACCCTGGACTCTGCGGTGAGATCATTAACCGATCTTGCGGTTTACATTCTTCTTCTCCGTTCTTTGGTTCACCTAAACCAAACACCACGTCATCAACATCTTCTGCTTCTTCGTCTGAAGCACCGGTTATTCAAAGTGAACAGAACGGTGAAGCAGCGATGATTGTTCCACCGGTGGTTAAAAAGGTTAAAAACGGTTGGTTAGTTCTTGGTTTCACCATTGGTCTCGCTTCTTTGATAGTTCTAGGTCTCTGCCTCGTCGTGTTCTCGTTGTTTATAAAAAACCGGAGAGAAGACTACGATGACGTGATAATTACGCAACCTAAGCGAGAAGAAGAAAACAAAGAAATCAAGATCCAATTTCAAACCACTGCGCCGTCGTCGAAAAAGCGAATCCCAAGAAACGGAGATTTGATATTCTGCGGCGAAGGAGGAGGAGGAGGAGAAGCAATGTACACAGTTGACCAGTTGATGAGAGCTTCAGCAGAGCTTTTAGGAAGAGGATCAGTAGGTACAACGTATAAAGCGGTGATGGTTAATCAAATGATCGTGACGGTGAAGAGATTTGCTCCGTCGAAAACAGCGATTACTAGTGATTTAGAGTTTGAGAATCAGATGGAGATAGTTGGTGGACTTAAGCATCCGAATCTTGTTCCGGTTAAAGCTTATTTCCAGTCAAATGGAGAGAGACTTGTCATCTATGAGTACCAACCTAATGGAAGTCTCTTCAATCTTATTCATGGTTCGAGAACATCAAAGGCAAAGCCATTACATTGGACATCATGTTTGAAGATAGCAGAAGATGTAGCTCAAGCATTACATTACATTCACCAATCATCAGCCAAATTCCATGGAAACCTTAAGTCCACTAACATCCTCCTTGGTCACGACTTTGAAGCTTGTGTCACAGATTATTGTTTAAGTGTCTTAACAGACTCATCTGTTCCTCCCAATGACCCGGACATCTCTTCCTATAAAGCACCAGAGATAAGGAAATCAACAGATAGTCGTCCCACGTCGAAATGCGATGTTTACTCGTTCGGGGTCTTCCTCTTAGAGCTATTGACCGGTAAAACCGCTTCGAGGCAACCGATTATGGAGCCAAACGATATGTTGGATTGGGTAAGAGCAATGAGGCAAGAAGAAGAAAGGTCAAAGGAAGAGAATGGGCTAGAGATGATGACTCAAACGGCTTGTCTTTGCCGTGTAACATCGCCAGAGCAAAGGCCCACTATGAAAGAAGTGATCAAAATGATTCAAGAGATTAAGGGGAGTGTTGTGATGACTGAAGAGAACGAAAAATTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

660

Amino Acids

72.76

Weight (kDa)

6.5

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 94 - 187 4.1e-07 Leucine-rich repeat region
Pkinase PF00069 387 - 641 1.3e-30 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 387 - 642 2.9e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 950
AccI GTMKAC 1 cut(s) 511
AccII CGCG 3 cut(s) 201, 225, 656
AciI CCGC 9 cut(s) 60, 138, 201, 560, 687, 711, 1095, 1199, 1749
AclI AACGTT 1 cut(s) 594
AclWI GGATC 3 cut(s) 503, 1021, 1183
AcsI RAATTY 2 cut(s) 1517, 1973
AcuI CTGAAG 3 cut(s) 810, 1137, 1980
AcyI GRCGYC 2 cut(s) 108, 204
AfaI GTAC 4 cut(s) 409, 1127, 1186, 1379
AfiI CCNNNNNNNGG 3 cut(s) 737, 1076, 1755
AflII CTTAAG 2 cut(s) 1307, 1532
AflIII ACRYGT 1 cut(s) 654
AgeI ACCGGT 4 cut(s) 614, 796, 844, 1739
AgsI TTSAA 9 cut(s) 130, 423, 652, 806, 1037, 1402, 1462, 1568, 1931
AhdI GACNNNNNGTC 1 cut(s) 285
AhlI ACTAGT 1 cut(s) 1262
AjiI CACGTC 3 cut(s) 762, 979, 1689
AjnI CCWGG 1 cut(s) 676
AluBI AGCT 8 cut(s) 157, 301, 1151, 1162, 1337, 1481, 1571, 1732
AluI AGCT 8 cut(s) 157, 301, 1151, 1162, 1337, 1481, 1571, 1732
Alw26I GTCTC 6 cut(s) 260, 272, 902, 926, 1354, 1400
AlwI GGATC 3 cut(s) 503, 1021, 1183
Ama87I CYCGRG 2 cut(s) 334, 530
AoxI GGCC 1 cut(s) 1898
ApeKI GCWGC 1 cut(s) 827
ApoI RAATTY 2 cut(s) 1517, 1973
ArsI GACNNNNNNTTYG 6 cut(s) 746, 778, 1441, 1473, 1852, 1884
AsiGI ACCGGT 4 cut(s) 614, 796, 844, 1739
Asp700I GAANNNNTTC 2 cut(s) 83, 398
AspLEI GCGC 2 cut(s) 201, 1048
AspS9I GGNCC 1 cut(s) 1899
AsuC2I CCSGG 3 cut(s) 71, 260, 1631
AvaI CYCGRG 2 cut(s) 334, 530
BarI GAAGNNNNNNTAC 4 cut(s) 400, 432, 1735, 1767
BbsI GAAGAC 3 cut(s) 651, 972, 1711
BbvI GCAGC 1 cut(s) 839
BccI CCATC 3 cut(s) 109, 1198, 1282
BceAI ACGGC 5 cut(s) 95, 547, 1033, 1860, 1878
BciT130I CCWGG 1 cut(s) 678
BclI TGATCA 2 cut(s) 295, 1917
BcnI CCSGG 3 cut(s) 71, 260, 1631
BcoDI GTCTC 6 cut(s) 260, 272, 902, 926, 1354, 1400
BcuI ACTAGT 1 cut(s) 1262
BfaI CTAG 3 cut(s) 917, 1263, 1844
BfrI CTTAAG 2 cut(s) 1307, 1532
BisI GCNGC 3 cut(s) 202, 828, 1096
BlsI GCNGC 3 cut(s) 203, 829, 1097
Bme1390I CCNGG 4 cut(s) 71, 260, 678, 1631
BmeRI GACNNNNNGTC 1 cut(s) 285
BmeT110I CYCGRG 2 cut(s) 334, 530
BmgBI CACGTC 3 cut(s) 762, 979, 1689
BmgT120I GGNCC 1 cut(s) 1899
BmiI GGNNCC 1 cut(s) 1773
BmrFI CCNGG 4 cut(s) 71, 260, 678, 1631
BmsI GCATC 1 cut(s) 1321
BoxI GACNNNNGTC 1 cut(s) 189
BpiI GAAGAC 3 cut(s) 651, 972, 1711
BplI GAGNNNNNCTC 4 cut(s) 311, 343, 1225, 1257
Bpu10I CCTNAGC 2 cut(s) 386, 996
BpuEI CTTGAG 3 cut(s) 201, 338, 1467
BpuMI CCSGG 3 cut(s) 71, 260, 1631
BsaHI GRCGYC 2 cut(s) 108, 204
BsaI GGTCTC 3 cut(s) 260, 902, 926
BsaJI CCNNGG 4 cut(s) 259, 676, 1522, 1552
BsaWI WCCGGW 9 cut(s) 274, 404, 476, 614, 796, 844, 957, 1327, 1739
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 458, 488
Bsc4I CCNNNNNNNGG 3 cut(s) 737, 1076, 1755
Bse118I RCCGGY 4 cut(s) 614, 796, 844, 1739
Bse1I ACTGG 3 cut(s) 600, 1138, 1345
Bse3DI GCAATG 2 cut(s) 1128, 1809
BseBI CCWGG 1 cut(s) 678
BseDI CCNNGG 4 cut(s) 259, 676, 1522, 1552
BseGI GGATG 3 cut(s) 101, 1312, 1545
BseLI CCNNNNNNNGG 3 cut(s) 737, 1076, 1755
BseMI GCAATG 2 cut(s) 1128, 1809
BseMII CTCAG 2 cut(s) 497, 529
BseNI ACTGG 3 cut(s) 600, 1138, 1345
BseRI GAGGAG 8 cut(s) 29, 32, 35, 348, 1119, 1122, 1125, 1128
BseXI GCAGC 1 cut(s) 839
Bsh1236I CGCG 3 cut(s) 201, 225, 656
BshFI GGCC 1 cut(s) 1900
BshTI ACCGGT 4 cut(s) 614, 796, 844, 1739
BsiHKCI CYCGRG 2 cut(s) 334, 530
BslFI GGGAC 1 cut(s) 1668
BslI CCNNNNNNNGG 3 cut(s) 737, 1076, 1755
BsmAI GTCTC 6 cut(s) 260, 272, 902, 926, 1354, 1400
BsmFI GGGAC 1 cut(s) 1668
BsnI GGCC 1 cut(s) 1900
Bso31I GGTCTC 3 cut(s) 260, 902, 926
BsoBI CYCGRG 2 cut(s) 334, 530
Bsp1407I TGTACA 1 cut(s) 1125
Bsp19I CCATGG 1 cut(s) 1522
BspACI CCGC 9 cut(s) 60, 138, 201, 560, 687, 711, 1095, 1199, 1749
BspANI GGCC 1 cut(s) 1900
BspCNI CTCAG 2 cut(s) 498, 528
BspFNI CGCG 3 cut(s) 201, 225, 656
BspLI GGNNCC 1 cut(s) 1773
BspPI GGATC 3 cut(s) 503, 1021, 1183
BspTI CTTAAG 2 cut(s) 1307, 1532
BspTNI GGTCTC 3 cut(s) 260, 902, 926
BsrDI GCAATG 2 cut(s) 1128, 1809
BsrFI RCCGGY 4 cut(s) 614, 796, 844, 1739
BsrGI TGTACA 1 cut(s) 1125
BsrI ACTGG 3 cut(s) 600, 1138, 1345
BssAI RCCGGY 4 cut(s) 614, 796, 844, 1739
BssECI CCNNGG 4 cut(s) 259, 676, 1522, 1552
BssNI GRCGYC 2 cut(s) 108, 204
BssT1I CCWWGG 2 cut(s) 1522, 1552
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 6 cut(s) 191, 248, 821, 869, 1132, 1228
BstACI GRCGYC 2 cut(s) 108, 204
BstAFI CTTAAG 2 cut(s) 1307, 1532
BstAUI TGTACA 1 cut(s) 1125
BstDEI CTNAG 7 cut(s) 284, 311, 386, 506, 515, 996, 1726
BstDSI CCRYGG 1 cut(s) 1522
BstF5I GGATG 3 cut(s) 101, 1312, 1545
BstFNI CGCG 3 cut(s) 201, 225, 656
BstHHI GCGC 2 cut(s) 201, 1048
BstMAI GTCTC 6 cut(s) 260, 272, 902, 926, 1354, 1400
BstMWI GCNNNNNNNGC 2 cut(s) 210, 997
BstNI CCWGG 1 cut(s) 678
BstPAI GACNNNNGTC 1 cut(s) 189
BstSCI CCNGG 4 cut(s) 69, 258, 676, 1629
BstUI CGCG 3 cut(s) 201, 225, 656
BstV1I GCAGC 1 cut(s) 839
BstV2I GAAGAC 3 cut(s) 651, 972, 1711
BstX2I RGATCY 1 cut(s) 1026
BstXI CCANNNNNNTGG 3 cut(s) 1352, 1388, 1446
BstYI RGATCY 1 cut(s) 1026
BsuRI GGCC 1 cut(s) 1900
BtgI CCRYGG 1 cut(s) 1522
BtgZI GCGATG 3 cut(s) 845, 1713, 1869
BtrI CACGTC 3 cut(s) 762, 979, 1689
BtsCI GGATG 3 cut(s) 101, 1312, 1545
BtsI GCAGTG 1 cut(s) 1041
BtsIMutI CAGTG 1 cut(s) 1041
CfoI GCGC 2 cut(s) 201, 1048
Cfr10I RCCGGY 4 cut(s) 614, 796, 844, 1739
Cfr13I GGNCC 1 cut(s) 1899
CseI GACGC 4 cut(s) 116, 193, 214, 645
Csp6I GTAC 4 cut(s) 408, 1126, 1185, 1378
CspAI ACCGGT 4 cut(s) 614, 796, 844, 1739
CviAII CATG 3 cut(s) 1412, 1455, 1523
CviQI GTAC 4 cut(s) 408, 1126, 1185, 1378
DdeI CTNAG 7 cut(s) 284, 311, 386, 506, 515, 996, 1726
DraI TTTAAA 1 cut(s) 525
DriI GACNNNNNGTC 1 cut(s) 285
Eam1105I GACNNNNNGTC 1 cut(s) 285
Eco130I CCWWGG 2 cut(s) 1522, 1552
Eco31I GGTCTC 3 cut(s) 260, 902, 926
Eco57I CTGAAG 3 cut(s) 810, 1137, 1980
Eco88I CYCGRG 2 cut(s) 334, 530
EcoRII CCWGG 1 cut(s) 676
EcoT14I CCWWGG 2 cut(s) 1522, 1552
ErhI CCWWGG 2 cut(s) 1522, 1552
FaeI CATG 3 cut(s) 1415, 1458, 1526
FaqI GGGAC 1 cut(s) 1668
FatI CATG 3 cut(s) 1411, 1454, 1522
FauI CCCGC 1 cut(s) 567
FbaI TGATCA 2 cut(s) 295, 1917
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 202, 828, 1096
FokI GGATG 3 cut(s) 88, 1299, 1532
Fsp4HI GCNGC 3 cut(s) 202, 828, 1096
FspBI CTAG 3 cut(s) 917, 1263, 1844
GlaI GCGC 2 cut(s) 200, 1047
GluI GCNGC 3 cut(s) 202, 828, 1096
HaeIII GGCC 1 cut(s) 1900
HgaI GACGC 4 cut(s) 116, 193, 214, 645
HhaI GCGC 2 cut(s) 201, 1048
Hin1I GRCGYC 2 cut(s) 108, 204
Hin1II CATG 3 cut(s) 1415, 1458, 1526
Hin6I GCGC 2 cut(s) 199, 1046
HinP1I GCGC 2 cut(s) 199, 1046
HincII GTYRAC 4 cut(s) 444, 512, 630, 1135
HindII GTYRAC 4 cut(s) 444, 512, 630, 1135
HindIII AAGCTT 3 cut(s) 155, 1335, 1569
HpaI GTTAAC 2 cut(s) 444, 630
Hpy188I TCNGA 7 cut(s) 106, 507, 582, 790, 1287, 1317, 1982
HpyAV CCTTC 4 cut(s) 44, 103, 136, 1094
HpyCH4III ACNGT 6 cut(s) 191, 248, 821, 869, 1132, 1228
HpyCH4IV ACGT 5 cut(s) 594, 761, 978, 1190, 1688
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 997
HpyF3I CTNAG 7 cut(s) 284, 311, 386, 506, 515, 996, 1726
HpySE526I ACGT 5 cut(s) 594, 761, 978, 1190, 1688
Hsp92I GRCGYC 2 cut(s) 108, 204
Hsp92II CATG 3 cut(s) 1415, 1458, 1526
HspAI GCGC 2 cut(s) 199, 1046
Ksp22I TGATCA 2 cut(s) 295, 1917
KspAI GTTAAC 2 cut(s) 444, 630
LmnI GCTCC 2 cut(s) 1246, 1771
Lsp1109I GCAGC 1 cut(s) 839
LweI GCATC 1 cut(s) 1321
MaeI CTAG 3 cut(s) 917, 1263, 1844
MaeII ACGT 5 cut(s) 594, 761, 978, 1190, 1688
MaeIII GTNAC 6 cut(s) 602, 642, 1222, 1556, 1576, 1879
MflI RGATCY 1 cut(s) 1026
MluCI AATT 5 cut(s) 423, 984, 1031, 1517, 1973
MluI ACGCGT 1 cut(s) 654
MlyI GAGTC 8 cut(s) 83, 274, 507, 517, 631, 675, 1601, 1849
MmeI TCCRAC 2 cut(s) 129, 1767
MroXI GAANNNNTTC 2 cut(s) 83, 398
MspA1I CMGCKG 1 cut(s) 140
MspCI CTTAAG 2 cut(s) 1307, 1532
MspR9I CCNGG 4 cut(s) 71, 260, 678, 1631
MvaI CCWGG 1 cut(s) 678
MvnI CGCG 3 cut(s) 201, 225, 656
MwoI GCNNNNNNNGC 2 cut(s) 210, 997
NciI CCSGG 3 cut(s) 71, 260, 1631
NcoI CCATGG 1 cut(s) 1522
NlaIII CATG 3 cut(s) 1415, 1458, 1526
NlaIV GGNNCC 1 cut(s) 1773
NmuCI GTSAC 3 cut(s) 1222, 1556, 1576
PaeR7I CTCGAG 1 cut(s) 530
PcsI WCGNNNNNNNCGW 3 cut(s) 229, 1253, 1760
PdmI GAANNNNTTC 2 cut(s) 83, 398
PfeI GAWTC 7 cut(s) 343, 484, 648, 1065, 1282, 1318, 1927
PflFI GACNNNGTC 1 cut(s) 110
PinAI ACCGGT 4 cut(s) 614, 796, 844, 1739
PkrI GCNGC 3 cut(s) 203, 829, 1097
PleI GAGTC 8 cut(s) 83, 274, 507, 516, 631, 675, 1601, 1849
PpsI GAGTC 8 cut(s) 83, 274, 507, 516, 631, 675, 1601, 1849
PshAI GACNNNNGTC 1 cut(s) 189
PsiI TTATAA 1 cut(s) 950
Psp1406I AACGTT 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 1 cut(s) 1773
PspPI GGNCC 1 cut(s) 1899
PsuI RGATCY 1 cut(s) 1026
PsyI GACNNNGTC 1 cut(s) 110
RsaI GTAC 4 cut(s) 409, 1127, 1186, 1379
RsaNI GTAC 4 cut(s) 408, 1126, 1185, 1378
SalI GTCGAC 1 cut(s) 510
SatI GCNGC 3 cut(s) 202, 828, 1096
Sau96I GGNCC 1 cut(s) 1899
SchI GAGTC 8 cut(s) 83, 274, 507, 517, 631, 675, 1601, 1849
ScrFI CCNGG 4 cut(s) 71, 260, 678, 1631
SfaNI GCATC 1 cut(s) 1321
Sfr274I CTCGAG 1 cut(s) 530
SgrAI CRCCGGYG 1 cut(s) 844
SlaI CTCGAG 1 cut(s) 530
SmlI CTYRAG 6 cut(s) 216, 317, 530, 1307, 1482, 1532
SmoI CTYRAG 6 cut(s) 216, 317, 530, 1307, 1482, 1532
SpeI ACTAGT 1 cut(s) 1262
Sse9I AATT 5 cut(s) 423, 984, 1031, 1517, 1973
SsiI CCGC 9 cut(s) 60, 138, 201, 560, 687, 711, 1095, 1199, 1749
SspMI CTAG 3 cut(s) 917, 1263, 1844
StyD4I CCNGG 4 cut(s) 69, 258, 676, 1629
StyI CCWWGG 2 cut(s) 1522, 1552
TaaI ACNGT 6 cut(s) 191, 248, 821, 869, 1132, 1228
TaiI ACGT 5 cut(s) 597, 764, 981, 1193, 1691
TasI AATT 5 cut(s) 423, 984, 1031, 1517, 1973
TatI WGTACW 1 cut(s) 1125
TauI GCSGC 2 cut(s) 204, 1098
TfiI GAWTC 7 cut(s) 343, 484, 648, 1065, 1282, 1318, 1927
TscAI CASTG 1 cut(s) 1048
TseFI GTSAC 3 cut(s) 1222, 1556, 1576
TseI GCWGC 1 cut(s) 827
Tsp45I GTSAC 3 cut(s) 1222, 1556, 1576
TspDTI ATGAA 3 cut(s) 576, 1400, 1922
TspGWI ACGGA 7 cut(s) 38, 477, 564, 615, 720, 1092, 1233
TspRI CASTG 1 cut(s) 1048
Tth111I GACNNNGTC 1 cut(s) 110
Vha464I CTTAAG 2 cut(s) 1307, 1532
XapI RAATTY 2 cut(s) 1517, 1973
XhoI CTCGAG 1 cut(s) 530
XmiI GTMKAC 1 cut(s) 511
XmnI GAANNNNTTC 2 cut(s) 83, 398
XspI CTAG 3 cut(s) 917, 1263, 1844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.