Rorug02G0134500
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009275
Physical Location & Seq
Reverse (-)
11582422 .. 11583290
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0134500.1

Sequence Viewer

Length: 489 bp
ATGGCGCATTACCAGAGCGAGTACGGCAGAGACAAGACCACCGACGAGTTCGGAAACCCGATCCGCCGGACTGAGGACCCTGTTCACCATGGTGTAACCGAAGCAGCCACCGGGTACGGCACTCATGACACTAGAACAGGGTACGGAACTCATGACACCACCGGAACGGGGTACGGGACTCATAGCACAACTGGTACAGGCTACGGAACTCATGGCACCGCCACTGGTCCCACTGGCTTCAATGCAACAACGGCCGGCGTTCACAGCGTCCCGCTTCACCGCTCTGACAGCTCAAGCTCTTCTGAGGATGATGGGTACGGCGGGAGGAGGAAGAAGAAGGGCTTGAAGGAGAAGATAAAGGAGAAGCTGCCAGGTGGCACACACGGGTCCGAGGACCGTTACGGTGCGACTACTACACCTTACGGTGGACAGCACCAGGAGAAGGGAATGATGGACAAGATCAAAGAGAAGCTTCCCGGCCACCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

162

Amino Acids

17.32

Weight (kDa)

7.25

Isoelectric Point (pI)

21.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 13 - 162 6.2e-32 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 282
AciI CCGC 5 cut(s) 64, 219, 272, 280, 321
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 2 cut(s) 252, 478
AfaI GTAC 6 cut(s) 23, 116, 143, 173, 196, 317
AfiI CCNNNNNNNGG 4 cut(s) 73, 168, 425, 442
AgsI TTSAA 2 cut(s) 241, 346
AjnI CCWGG 2 cut(s) 370, 435
AleI CACNNNNGTG 1 cut(s) 90
AluBI AGCT 4 cut(s) 291, 297, 367, 472
AluI AGCT 4 cut(s) 291, 297, 367, 472
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 55
AoxI GGCC 2 cut(s) 252, 478
ApeKI GCWGC 2 cut(s) 104, 367
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 4 cut(s) 76, 227, 387, 394
AsuC2I CCSGG 2 cut(s) 112, 477
AsuHPI GGTGA 2 cut(s) 77, 269
AvaII GGWCC 4 cut(s) 76, 227, 387, 394
BanI GGYRCC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 116, 354
BccI CCATC 2 cut(s) 305, 445
BceAI ACGGC 4 cut(s) 40, 133, 267, 334
BciT130I CCWGG 2 cut(s) 372, 437
BcnI CCSGG 2 cut(s) 112, 477
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 132
BisI GCNGC 2 cut(s) 105, 368
BlsI GCNGC 2 cut(s) 106, 369
Bme1390I CCNGG 4 cut(s) 112, 372, 437, 477
Bme18I GGWCC 4 cut(s) 76, 227, 387, 394
BmgT120I GGNCC 4 cut(s) 76, 227, 387, 394
BmiI GGNNCC 4 cut(s) 78, 217, 229, 388
BmrFI CCNGG 4 cut(s) 112, 372, 437, 477
BpuEI CTTGAG 1 cut(s) 277
BpuMI CCSGG 2 cut(s) 112, 477
BsaJI CCNNGG 2 cut(s) 88, 390
BsaWI WCCGGW 1 cut(s) 161
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 168, 425, 442
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 196, 229, 238
BseBI CCWGG 2 cut(s) 372, 437
BseDI CCNNGG 2 cut(s) 88, 390
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 4 cut(s) 73, 168, 425, 442
BseMII CTCAG 2 cut(s) 63, 294
BseNI ACTGG 3 cut(s) 196, 229, 238
BseRI GAGGAG 1 cut(s) 340
BseX3I CGGCCG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 116, 354
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 2 cut(s) 254, 480
BshNI GGYRCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 255
BsiSI CCGG 5 cut(s) 67, 111, 162, 255, 477
BslFI GGGAC 3 cut(s) 190, 213, 254
BslI CCNNNNNNNGG 4 cut(s) 73, 168, 425, 442
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 3 cut(s) 190, 213, 254
BsnI GGCC 2 cut(s) 254, 480
Bsp143I GATC 2 cut(s) 60, 459
Bsp19I CCATGG 1 cut(s) 88
BspACI CCGC 5 cut(s) 64, 219, 272, 280, 321
BspANI GGCC 2 cut(s) 254, 480
BspCNI CTCAG 2 cut(s) 64, 295
BspHI TCATGA 2 cut(s) 124, 151
BspLI GGNNCC 4 cut(s) 78, 217, 229, 388
BspPI GGATC 1 cut(s) 55
BspQI GCTCTTC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 3 cut(s) 196, 229, 238
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 88, 390
BssMI GATC 2 cut(s) 60, 459
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 2 cut(s) 372, 437
Bst4CI ACNGT 3 cut(s) 398, 404, 425
Bst6I CTCTTC 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 72, 303
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 63, 462
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 2 cut(s) 60, 459
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 4 cut(s) 24, 251, 264, 288
BstNI CCWGG 2 cut(s) 372, 437
BstSCI CCNGG 4 cut(s) 110, 370, 435, 475
BstV1I GCAGC 2 cut(s) 116, 354
BstZI CGGCCG 1 cut(s) 252
BsuRI GGCC 2 cut(s) 254, 480
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 222, 231
Cac8I GCNNGC 1 cut(s) 256
CciI TCATGA 2 cut(s) 124, 151
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 4 cut(s) 76, 227, 387, 394
CseI GACGC 1 cut(s) 256
Csp6I GTAC 6 cut(s) 22, 115, 142, 172, 195, 316
CviAII CATG 4 cut(s) 89, 125, 152, 212
CviQI GTAC 6 cut(s) 22, 115, 142, 172, 195, 316
DdeI CTNAG 2 cut(s) 72, 303
DpnI GATC 2 cut(s) 62, 461
DpnII GATC 2 cut(s) 60, 459
EaeI YGGCCR 2 cut(s) 252, 478
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 304
EciI GGCGGA 1 cut(s) 53
EclXI CGGCCG 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 88
Eco47I GGWCC 4 cut(s) 76, 227, 387, 394
Eco52I CGGCCG 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 370, 435
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 4 cut(s) 92, 128, 155, 215
FaiI YATR 5 cut(s) 90, 126, 153, 183, 213
FalI AAGNNNNNCTT 4 cut(s) 326, 358, 456, 488
FaqI GGGAC 3 cut(s) 190, 213, 254
FatI CATG 4 cut(s) 88, 124, 151, 211
FauI CCCGC 2 cut(s) 279, 314
Fnu4HI GCNGC 2 cut(s) 105, 368
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 2 cut(s) 105, 368
FspBI CTAG 1 cut(s) 132
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 105, 368
HaeIII GGCC 2 cut(s) 254, 480
HapII CCGG 5 cut(s) 67, 111, 162, 255, 477
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 7
Hin1II CATG 4 cut(s) 92, 128, 155, 215
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 1 cut(s) 178
HpaII CCGG 5 cut(s) 67, 111, 162, 255, 477
HphI GGTGA 2 cut(s) 77, 269
Hpy166II GTNNAC 3 cut(s) 85, 262, 428
Hpy188I TCNGA 4 cut(s) 53, 286, 304, 391
Hpy188III TCNNGA 2 cut(s) 125, 152
Hpy8I GTNNAC 3 cut(s) 85, 262, 428
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 331, 340, 436
HpyCH4III ACNGT 3 cut(s) 398, 404, 425
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 251, 264, 288
HpyF3I CTNAG 2 cut(s) 72, 303
Hsp92II CATG 4 cut(s) 92, 128, 155, 215
HspAI GCGC 1 cut(s) 5
KroI GCCGGC 1 cut(s) 254
KroNI GCCGGC 1 cut(s) 256
Kzo9I GATC 2 cut(s) 60, 459
LguI GCTCTTC 1 cut(s) 304
Lsp1109I GCAGC 2 cut(s) 116, 354
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 2 cut(s) 94, 398
MalI GATC 2 cut(s) 62, 461
MbiI CCGCTC 1 cut(s) 282
MboI GATC 2 cut(s) 60, 459
MboII GAAGA 4 cut(s) 291, 343, 346, 364
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 5 cut(s) 67, 298, 318, 321, 385
MroNI GCCGGC 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 5 cut(s) 67, 111, 162, 255, 477
MspR9I CCNGG 4 cut(s) 112, 372, 437, 477
MvaI CCWGG 2 cut(s) 372, 437
MwoI GCNNNNNNNGC 4 cut(s) 24, 251, 264, 288
NaeI GCCGGC 1 cut(s) 256
NciI CCSGG 2 cut(s) 112, 477
NcoI CCATGG 1 cut(s) 88
NdeII GATC 2 cut(s) 60, 459
NgoMIV GCCGGC 1 cut(s) 254
NlaIII CATG 4 cut(s) 92, 128, 155, 215
NlaIV GGNNCC 4 cut(s) 78, 217, 229, 388
OliI CACNNNNGTG 1 cut(s) 90
PagI TCATGA 2 cut(s) 124, 151
PciSI GCTCTTC 1 cut(s) 304
PdiI GCCGGC 1 cut(s) 256
PkrI GCNGC 2 cut(s) 106, 369
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PpuMI RGGWCCY 1 cut(s) 76
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 370, 435
PspGI CCWGG 2 cut(s) 370, 435
PspN4I GGNNCC 4 cut(s) 78, 217, 229, 388
PspPI GGNCC 4 cut(s) 76, 227, 387, 394
PspPPI RGGWCCY 1 cut(s) 76
RsaI GTAC 6 cut(s) 23, 116, 143, 173, 196, 317
RsaNI GTAC 6 cut(s) 22, 115, 142, 172, 195, 316
RseI CAYNNNNRTG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 304
SatI GCNGC 2 cut(s) 105, 368
Sau3AI GATC 2 cut(s) 60, 459
Sau96I GGNCC 4 cut(s) 76, 227, 387, 394
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 4 cut(s) 112, 372, 437, 477
SetI ASST 6 cut(s) 293, 299, 369, 376, 421, 474
SinI GGWCC 4 cut(s) 76, 227, 387, 394
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
SsiI CCGC 5 cut(s) 64, 219, 272, 280, 321
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 4 cut(s) 110, 370, 435, 475
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 3 cut(s) 398, 404, 425
TscAI CASTG 2 cut(s) 229, 238
TseI GCWGC 2 cut(s) 104, 367
TspGWI ACGGA 2 cut(s) 159, 219
TspRI CASTG 2 cut(s) 229, 238
VpaK11BI GGWCC 4 cut(s) 76, 227, 387, 394
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.