Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021309.1

Orthogroup ID

OG0009275

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 588

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021309.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 587 bp

ctggctccgccctctccaacaaggcacaacaaaaccggcctggttctcggaatatcaatagcagtcgcatttatgtttgctggtctcttattcgtgtttgcagtgatccgaaaccgaacgtccgggactgaagccgaaattagaccctcgaaaccgtccccaagtgaagacagggatccatatcccgccgccgtctcggttcaaaaagaggagaggcccaaagtagttgctcattacgaggaagctcaaactagagtgatacccaagagcgggaacttggtgttttgctatggggagacccagttgtacagcttggagcaactgatgagggcctccgcggagttacttgggagaggaaccatcggaacgacgtacaaggcggtgctggataaccagctgatagtgacggtgaagagattggacgcgagtaagactgccattacgaccagggaggttttcgatcagcatatggacgccgtgggtgggttgcgccaccccaatttggttccggtcagggcttattttcaggccaagggagagaggctggtcttgtatgattaccaaaccaatgggagtctcttcaatct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

196

Amino Acids

21.66

Weight (kDa)

9.21

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50230 AT3G50230 AT5G67200
fragaria_vesca	FvH4_1g16410
malus_domestica	MD02G1176600.v1.1 MD08G1095300.v1.1
prunus_persica	Prupe.6G231100_v2.0.a1
pyrus_communis	pycom01g08530 pycom02g14290 pycom15g07270
rosa_chinensis	RchiOBHm_Chr2g0106291
rosa_laevigata	RLG00000017486
rosa_multiflora	Rmu_sc0020846.1_g000001 Rmu_sc0021309.1_g000001 Rmu_ssc0000338.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137300
rosa_rugosa	Rorug02G0134500
rosa_samantha	Rh2AG185300 Rh2BG195600 Rh2CG190400 Rh2DG191500
rosa_wichuraiana	Rw2G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	270
AccII	CGCG	2 cut(s)	338, 425
AciI	CCGC	7 cut(s)	8, 186, 189, 270, 336, 338, 380
AclWI	GGATC	3 cut(s)	100, 170, 183
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	2 cut(s)	308, 374
AfiI	CCNNNNNNNGG	4 cut(s)	269, 270, 483, 502
AgsI	TTSAA	2 cut(s)	203, 583
AjnI	CCWGG	2 cut(s)	39, 446
AluBI	AGCT	3 cut(s)	245, 312, 397
AluI	AGCT	3 cut(s)	245, 312, 397
Alw26I	GTCTC	4 cut(s)	89, 199, 290, 581
AlwI	GGATC	3 cut(s)	100, 170, 183
AoxI	GGCC	4 cut(s)	37, 215, 330, 528
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	216, 330
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	421
BamHI	GGATCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	174
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	2 cut(s)	176, 461
BciT130I	CCWGG	2 cut(s)	41, 448
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	4 cut(s)	89, 199, 290, 581
BfaI	CTAG	1 cut(s)	252
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	3 cut(s)	41, 124, 448
BmgT120I	GGNCC	2 cut(s)	216, 330
BmiI	GGNNCC	4 cut(s)	6, 177, 358, 507
BmrFI	CCNGG	3 cut(s)	41, 124, 448
BmrI	ACTGGG	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	474
BsaI	GGTCTC	2 cut(s)	89, 290
BsaJI	CCNNGG	4 cut(s)	336, 447, 477, 531
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 270, 483, 502
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	41, 448
BseDI	CCNNGG	4 cut(s)	336, 447, 477, 531
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	4 cut(s)	269, 270, 483, 502
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	224
Bsh1236I	CGCG	2 cut(s)	338, 425
BshFI	GGCC	4 cut(s)	39, 217, 332, 530
BsiSI	CCGG	3 cut(s)	36, 123, 509
BslFI	GGGAC	2 cut(s)	139, 142
BslI	CCNNNNNNNGG	4 cut(s)	269, 270, 483, 502
BsmAI	GTCTC	4 cut(s)	89, 199, 290, 581
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	2 cut(s)	139, 142
BsnI	GGCC	4 cut(s)	39, 217, 332, 530
Bso31I	GGTCTC	2 cut(s)	89, 290
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	3 cut(s)	105, 175, 460
BspACI	CCGC	7 cut(s)	8, 186, 189, 270, 336, 338, 380
BspANI	GGCC	4 cut(s)	39, 217, 332, 530
BspFNI	CGCG	2 cut(s)	338, 425
BspLI	GGNNCC	4 cut(s)	6, 177, 358, 507
BspPI	GGATC	3 cut(s)	100, 170, 183
BspTNI	GGTCTC	2 cut(s)	89, 290
BsrBI	CCGCTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	4 cut(s)	336, 447, 477, 531
BssMI	GATC	3 cut(s)	105, 175, 460
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	41, 448
Bst4CI	ACNGT	2 cut(s)	156, 409
Bst6I	CTCTTC	2 cut(s)	407, 584
BstACI	GRCGYC	1 cut(s)	474
BstAUI	TGTACA	1 cut(s)	306
BstDSI	CCRYGG	2 cut(s)	336, 477
BstFNI	CGCG	2 cut(s)	338, 425
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	3 cut(s)	108, 178, 463
BstMAI	GTCTC	4 cut(s)	89, 199, 290, 581
BstMBI	GATC	3 cut(s)	105, 175, 460
BstNI	CCWGG	2 cut(s)	41, 448
BstSCI	CCNGG	3 cut(s)	39, 122, 446
BstUI	CGCG	2 cut(s)	338, 425
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	4 cut(s)	39, 217, 332, 530
BtgI	CCRYGG	2 cut(s)	336, 477
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
CfoI	GCGC	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	216, 330
Cfr42I	CCGCGG	1 cut(s)	339
CseI	GACGC	2 cut(s)	431, 482
Csp6I	GTAC	2 cut(s)	307, 373
CviQI	GTAC	2 cut(s)	307, 373
DpnI	GATC	3 cut(s)	107, 177, 462
DpnII	GATC	3 cut(s)	105, 175, 460
Eam1104I	CTCTTC	2 cut(s)	407, 584
EarI	CTCTTC	2 cut(s)	407, 584
Eco130I	CCWWGG	1 cut(s)	531
Eco31I	GGTCTC	2 cut(s)	89, 290
Eco57I	CTGAAG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	39, 446
EcoT14I	CCWWGG	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	199
FaiI	YATR	6 cut(s)	74, 181, 291, 468, 470, 555
FaqI	GGGAC	2 cut(s)	139, 142
FauI	CCCGC	2 cut(s)	193, 263
FauNDI	CATATG	1 cut(s)	468
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	39, 217, 332, 530
HapII	CCGG	3 cut(s)	36, 123, 509
HgaI	GACGC	2 cut(s)	431, 482
HhaI	GCGC	1 cut(s)	492
Hin1I	GRCGYC	1 cut(s)	474
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HinfI	GANTC	1 cut(s)	574
HpaII	CCGG	3 cut(s)	36, 123, 509
HphI	GGTGA	1 cut(s)	421
Hpy188I	TCNGA	3 cut(s)	50, 110, 365
Hpy99I	CGWCG	1 cut(s)	373
HpyCH4III	ACNGT	2 cut(s)	156, 409
HpyCH4IV	ACGT	2 cut(s)	119, 371
HpyCH4V	TGCA	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	119, 371
Hsp92I	GRCGYC	1 cut(s)	474
HspAI	GCGC	1 cut(s)	490
KspI	CCGCGG	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	105, 175, 460
LmnI	GCTCC	2 cut(s)	10, 316
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	2 cut(s)	119, 371
MaeIII	GTNAC	2 cut(s)	342, 403
MalI	GATC	3 cut(s)	107, 177, 462
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	3 cut(s)	105, 175, 460
MboII	GAAGA	3 cut(s)	179, 424, 571
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	2 cut(s)	138, 499
MlyI	GAGTC	1 cut(s)	583
MmeI	TCCRAC	1 cut(s)	41
MspA1I	CMGCKG	2 cut(s)	338, 397
MspI	CCGG	3 cut(s)	36, 123, 509
MspR9I	CCNGG	3 cut(s)	41, 124, 448
MvaI	CCWGG	2 cut(s)	41, 448
MvnI	CGCG	2 cut(s)	338, 425
NciI	CCSGG	1 cut(s)	124
NdeI	CATATG	1 cut(s)	468
NdeII	GATC	3 cut(s)	105, 175, 460
NlaIV	GGNNCC	4 cut(s)	6, 177, 358, 507
NmuCI	GTSAC	1 cut(s)	403
PfoI	TCCNGGA	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	39, 446
PspGI	CCWGG	2 cut(s)	39, 446
PspN4I	GGNNCC	4 cut(s)	6, 177, 358, 507
PspPI	GGNCC	2 cut(s)	216, 330
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	2 cut(s)	308, 374
RsaNI	GTAC	2 cut(s)	307, 373
SacII	CCGCGG	1 cut(s)	339
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	105, 175, 460
Sau96I	GGNCC	2 cut(s)	216, 330
SchI	GAGTC	1 cut(s)	583
ScrFI	CCNGG	3 cut(s)	41, 124, 448
SetI	ASST	6 cut(s)	122, 247, 314, 374, 399, 456
Sfr303I	CCGCGG	1 cut(s)	339
SgrBI	CCGCGG	1 cut(s)	339
Sse9I	AATT	2 cut(s)	138, 499
SsiI	CCGC	7 cut(s)	8, 186, 189, 270, 336, 338, 380
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	39, 122, 446
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	2 cut(s)	156, 409
TaiI	ACGT	2 cut(s)	122, 374
TaqI	TCGA	2 cut(s)	149, 459
TasI	AATT	2 cut(s)	138, 499
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	191
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	403
TspRI	CASTG	1 cut(s)	108
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.