pycom15g07270
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009275
Physical Location & Seq
Reverse (-)
4451605 .. 4452113
509 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g07270.1

Sequence Viewer

Length: 447 bp
ATGATTGATTGTACTAGATTTGGTTCGGCGCCGAGAATCTTGCTTGTGATTAAGTGGAAATCAACAAGGGCAAGGCCGCTGCACTGGACATCCTGCTTGAAAATAGCGGAGGACGTAGCGCAAGGCCTCTCCTACATCCACCAAGCATGGAAGCTCGTCCACGGCAATCTCAAGTCCTCCAACGTCCTTCTTGGCTCGGACTTCGAAGCATGTCTCACCGACTACTGCCTCTCCGTTCTCGCCACCCCTACCCCAACGTCCGAAGAGGACCCCGATTCAACTGCGTACAAAGCCCCGGAGACTCGCACCAACTCGTCAAACGATCGATCATTATCGACAACGGCGGCAACCAACTCCAAAGTCCGATGTCTATGCATTCGGCGTTTTGTTGGTGGAGCTTCTCACGGGGAAGCCTCCATCGAAACACTTAGTCTTAGCGCCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

149

Amino Acids

16.05

Weight (kDa)

8.25

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 24 - 103 1.1e-07 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 28 - 102 8.3e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AciI CCGC 3 cut(s) 77, 107, 344
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 2 cut(s) 13, 287
AgsI TTSAA 2 cut(s) 100, 279
AluBI AGCT 2 cut(s) 154, 398
AluI AGCT 2 cut(s) 154, 398
Alw26I GTCTC 2 cut(s) 218, 293
AoxI GGCC 2 cut(s) 74, 124
ApeKI GCWGC 1 cut(s) 79
AspLEI GCGC 3 cut(s) 31, 121, 440
AspS9I GGNCC 1 cut(s) 268
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 208
AsuII TTCGAA 1 cut(s) 204
AvaII GGWCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 425
BceAI ACGGC 2 cut(s) 178, 357
BcgI CGANNNNNNTGC 6 cut(s) 22, 56, 263, 297, 354, 388
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 218, 293
BfaI CTAG 1 cut(s) 15
BfoI RGCGCY 2 cut(s) 32, 441
BisI GCNGC 3 cut(s) 77, 80, 345
BlsI GCNGC 3 cut(s) 78, 81, 346
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 2 cut(s) 30, 270
BmrFI CCNGG 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 296
Bsa29I ATCGAT 1 cut(s) 325
BsaBI GATNNNNATC 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 160, 294
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bse1I ACTGG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 331
BseCI ATCGAT 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 160, 294
BseGI GGATG 2 cut(s) 89, 135
BseJI GATNNNNATC 1 cut(s) 331
BseNI ACTGG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 2 cut(s) 76, 126
BshNI GGYRCC 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 325
BsiEI CGRYCG 1 cut(s) 325
BsiSI CCGG 2 cut(s) 296, 441
BsmAI GTCTC 2 cut(s) 218, 293
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 2 cut(s) 76, 126
Bsp119I TTCGAA 1 cut(s) 204
Bsp143I GATC 2 cut(s) 322, 326
BspACI CCGC 3 cut(s) 77, 107, 344
BspANI GGCC 2 cut(s) 76, 126
BspDI ATCGAT 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 30, 270
BspT104I TTCGAA 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 160, 294
BssMI GATC 2 cut(s) 322, 326
BssNI GRCGYC 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 428, 434
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 89, 135
BstH2I RGCGCY 2 cut(s) 32, 441
BstHHI GCGC 3 cut(s) 31, 121, 440
BstKTI GATC 2 cut(s) 325, 329
BstMAI GTCTC 2 cut(s) 218, 293
BstMBI GATC 2 cut(s) 322, 326
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 66
Bsu15I ATCGAT 1 cut(s) 325
BsuRI GGCC 2 cut(s) 76, 126
BsuTUI ATCGAT 1 cut(s) 325
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 89, 135
BtsIMutI CAGTG 1 cut(s) 82
CfoI GCGC 3 cut(s) 31, 121, 440
Cfr13I GGNCC 1 cut(s) 268
ClaI ATCGAT 1 cut(s) 325
Csp6I GTAC 2 cut(s) 12, 286
CviAII CATG 2 cut(s) 147, 210
CviJI RGCY 7 cut(s) 76, 126, 154, 195, 293, 398, 413
CviKI_1 RGCY 7 cut(s) 76, 126, 154, 195, 293, 398, 413
CviQI GTAC 2 cut(s) 12, 286
DdeI CTNAG 2 cut(s) 428, 434
DinI GGCGCC 1 cut(s) 30
DpnI GATC 2 cut(s) 324, 328
DpnII GATC 2 cut(s) 322, 326
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 377
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
FaeI CATG 2 cut(s) 150, 213
FaiI YATR 3 cut(s) 148, 211, 373
FatI CATG 2 cut(s) 146, 209
Fnu4HI GCNGC 3 cut(s) 77, 80, 345
FokI GGATG 2 cut(s) 76, 122
Fsp4HI GCNGC 3 cut(s) 77, 80, 345
FspBI CTAG 1 cut(s) 15
GlaI GCGC 3 cut(s) 30, 120, 439
GluI GCNGC 3 cut(s) 77, 80, 345
HaeII RGCGCY 2 cut(s) 32, 441
HaeIII GGCC 2 cut(s) 76, 126
HapII CCGG 2 cut(s) 296, 441
HhaI GCGC 3 cut(s) 31, 121, 440
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 2 cut(s) 150, 213
Hin6I GCGC 3 cut(s) 29, 119, 438
HinP1I GCGC 3 cut(s) 29, 119, 438
HinfI GANTC 3 cut(s) 36, 275, 301
HpaII CCGG 2 cut(s) 296, 441
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 199, 262, 365
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 197
HpyCH4IV ACGT 3 cut(s) 114, 183, 257
HpyCH4V TGCA 2 cut(s) 82, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 428, 434
HpySE526I ACGT 3 cut(s) 114, 183, 257
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 150, 213
HspAI GCGC 3 cut(s) 29, 119, 438
KasI GGCGCC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 322, 326
LmnI GCTCC 1 cut(s) 395
LpnPI CCDG 3 cut(s) 70, 106, 309
Lsp1109I GCAGC 1 cut(s) 66
MaeI CTAG 1 cut(s) 15
MaeII ACGT 3 cut(s) 114, 183, 257
MalI GATC 2 cut(s) 324, 328
MboI GATC 2 cut(s) 322, 326
MboII GAAGA 1 cut(s) 275
Mly113I GGCGCC 1 cut(s) 29
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 6 cut(s) 103, 137, 187, 239, 259, 424
Mph1103I ATGCAT 1 cut(s) 377
MseI TTAA 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 2 cut(s) 296, 441
MspR9I CCNGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 290
NarI GGCGCC 1 cut(s) 29
NciI CCSGG 1 cut(s) 296
NdeII GATC 2 cut(s) 322, 326
NlaIII CATG 2 cut(s) 150, 213
NlaIV GGNNCC 2 cut(s) 30, 270
NmeAIII GCCGAG 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 377
NspI RCATGY 1 cut(s) 213
NspV TTCGAA 1 cut(s) 204
PceI AGGCCT 1 cut(s) 126
PctI GAATGC 1 cut(s) 375
PfeI GAWTC 2 cut(s) 36, 275
PkrI GCNGC 3 cut(s) 78, 81, 346
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 1 cut(s) 295
PluTI GGCGCC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 295
PpuMI RGGWCCY 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 30, 270
PspPI GGNCC 1 cut(s) 268
PspPPI RGGWCCY 1 cut(s) 268
PvuI CGATCG 1 cut(s) 325
RsaI GTAC 2 cut(s) 13, 287
RsaNI GTAC 2 cut(s) 12, 286
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 3 cut(s) 77, 80, 345
Sau3AI GATC 2 cut(s) 322, 326
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 296
SetI ASST 5 cut(s) 117, 156, 186, 260, 400
SfoI GGCGCC 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 204
SinI GGWCC 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SseBI AGGCCT 1 cut(s) 126
SsiI CCGC 3 cut(s) 77, 107, 344
SspDI GGCGCC 1 cut(s) 28
SspMI CTAG 1 cut(s) 15
StuI AGGCCT 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 294
TaiI ACGT 3 cut(s) 117, 186, 260
TaqI TCGA 4 cut(s) 204, 325, 335, 420
TatI WGTACW 1 cut(s) 11
TauI GCSGC 2 cut(s) 79, 347
TfiI GAWTC 2 cut(s) 36, 275
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 89
TseI GCWGC 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 268
XceI RCATGY 1 cut(s) 213
XspI CTAG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.