Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000338.1

Orthogroup ID

OG0009275

Physical Location & Seq

Genomic Coordinates Reverse (-)

24935 .. 25616

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000338.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgttaggaaagatctctagccatgtgggttcaagatcgaatagagcaaagcctcttcactggacgtcgtgcttgaagatagctgaagacgtggctcaaggccttgcttacattcaccaagcgtccacgttgatccatggcaatctcaaatcgtccaatgtgcttttgggagctgactttgaggcctgtctcacggactacggtctggctctgtttgcagactcttctgccagtgaagatcctgagtctgcagggtataaagctcctgagacgaggaagtccagtcgccgagctacgtccaagtcagatgtgtatgcgtatggcatcctcttgctagagcttttgaccggtaaacatccgtcccaacatcctctgcttgttcccatggatgtgggggattgggttagggcgatgagggacaatgatgttggggatgataaccaacttgggatgctgaccgaggttgcttgtatatgtagtttgacatctccagaacagagaccggcaatgtggcaagtgttgaagatgttacaggagattaaagagtgtgtgatgacagaggataatgcaggtgttggattttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

195

Amino Acids

21.21

Weight (kDa)

5.47

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50230 AT3G50230 AT5G67200
fragaria_vesca	FvH4_1g16410
malus_domestica	MD02G1176600.v1.1 MD08G1095300.v1.1
prunus_persica	Prupe.6G231100_v2.0.a1
pyrus_communis	pycom01g08530 pycom02g14290 pycom15g07270
rosa_chinensis	RchiOBHm_Chr2g0106291
rosa_laevigata	RLG00000017486
rosa_multiflora	Rmu_sc0020846.1_g000001 Rmu_sc0021309.1_g000001 Rmu_ssc0000338.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137300
rosa_rugosa	Rorug02G0134500
rosa_samantha	Rh2AG185300 Rh2BG195600 Rh2CG190400 Rh2DG191500
rosa_wichuraiana	Rw2G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	560
AasI	GACNNNNNNGTC	1 cut(s)	277
AatII	GACGTC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	560
AclWI	GGATC	2 cut(s)	127, 233
AcuI	CTGAAG	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	65
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	3 cut(s)	33, 76, 523
AjiI	CACGTC	1 cut(s)	91
AluBI	AGCT	5 cut(s)	83, 173, 263, 293, 340
AluI	AGCT	5 cut(s)	83, 173, 263, 293, 340
Alw26I	GTCTC	3 cut(s)	194, 263, 493
AlwI	GGATC	2 cut(s)	127, 233
AoxI	GGCC	2 cut(s)	100, 183
AsiGI	ACCGGT	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	93
BcoDI	GTCTC	3 cut(s)	194, 263, 493
BfaI	CTAG	3 cut(s)	18, 335, 586
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	560
BglII	AGATCT	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	91
BmsI	GCATC	2 cut(s)	333, 441
BoxI	GACNNNNGTC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	3 cut(s)	136, 384, 459
BsaWI	WCCGGW	1 cut(s)	347
Bse118I	RCCGGY	2 cut(s)	347, 502
Bse1I	ACTGG	3 cut(s)	65, 231, 282
Bse3DI	GCAATG	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	136, 384, 459
BseGI	GGATG	6 cut(s)	324, 355, 367, 394, 439, 456
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	2 cut(s)	234, 258
BseNI	ACTGG	3 cut(s)	65, 231, 282
BshFI	GGCC	2 cut(s)	102, 185
BshTI	ACCGGT	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	348, 503
BslFI	GGGAC	2 cut(s)	346, 431
BsmAI	GTCTC	3 cut(s)	194, 263, 493
BsmBI	CGTCTC	1 cut(s)	263
BsmFI	GGGAC	2 cut(s)	346, 431
BsnI	GGCC	2 cut(s)	102, 185
Bso31I	GGTCTC	1 cut(s)	493
Bsp143I	GATC	4 cut(s)	12, 35, 132, 238
Bsp19I	CCATGG	2 cut(s)	136, 384
BspANI	GGCC	2 cut(s)	102, 185
BspCNI	CTCAG	2 cut(s)	235, 259
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	560
BspPI	GGATC	2 cut(s)	127, 233
BspTNI	GGTCTC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	513
BsrFI	RCCGGY	2 cut(s)	347, 502
BsrI	ACTGG	3 cut(s)	65, 231, 282
BssAI	RCCGGY	2 cut(s)	347, 502
BssECI	CCNNGG	3 cut(s)	136, 384, 459
BssMI	GATC	4 cut(s)	12, 35, 132, 238
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	2 cut(s)	136, 384
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	2 cut(s)	60, 229
BstACI	GRCGYC	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	243, 267
BstDSI	CCRYGG	2 cut(s)	136, 384
BstF5I	GGATG	6 cut(s)	324, 355, 367, 394, 439, 456
BstKTI	GATC	4 cut(s)	15, 38, 135, 241
BstMAI	GTCTC	3 cut(s)	194, 263, 493
BstMBI	GATC	4 cut(s)	12, 35, 132, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstPAI	GACNNNNGTC	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	2 cut(s)	12, 238
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	2 cut(s)	12, 238
BsuRI	GGCC	2 cut(s)	102, 185
BtgI	CCRYGG	2 cut(s)	136, 384
BtgZI	GCGATG	1 cut(s)	425
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	6 cut(s)	324, 355, 367, 394, 439, 456
BtsIMutI	CAGTG	2 cut(s)	58, 238
BveI	ACCTGC	1 cut(s)	560
Cfr10I	RCCGGY	2 cut(s)	347, 502
CseI	GACGC	1 cut(s)	111
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	3 cut(s)	23, 137, 385
DdeI	CTNAG	2 cut(s)	243, 267
DpnI	GATC	4 cut(s)	14, 37, 134, 240
DpnII	GATC	4 cut(s)	12, 35, 132, 238
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
Eam1104I	CTCTTC	2 cut(s)	60, 229
EarI	CTCTTC	2 cut(s)	60, 229
Eco130I	CCWWGG	2 cut(s)	136, 384
Eco147I	AGGCCT	2 cut(s)	102, 185
Eco31I	GGTCTC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	105
EcoT14I	CCWWGG	2 cut(s)	136, 384
ErhI	CCWWGG	2 cut(s)	136, 384
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	3 cut(s)	26, 140, 388
FaiI	YATR	8 cut(s)	24, 138, 258, 315, 321, 386, 473, 475
FaqI	GGGAC	2 cut(s)	346, 431
FatI	CATG	3 cut(s)	22, 136, 384
FokI	GGATG	6 cut(s)	311, 342, 354, 401, 446, 463
FspBI	CTAG	3 cut(s)	18, 335, 586
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	102, 185
HapII	CCGG	2 cut(s)	348, 503
HgaI	GACGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	26, 140, 388
HinfI	GANTC	2 cut(s)	221, 245
HpaII	CCGG	2 cut(s)	348, 503
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	126, 353
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	4 cut(s)	33, 242, 266, 491
Hpy8I	GTNNAC	2 cut(s)	126, 353
Hpy99I	CGWCG	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	4 cut(s)	65, 90, 128, 296
HpyCH4V	TGCA	3 cut(s)	218, 251, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	243, 267
HpySE526I	ACGT	4 cut(s)	65, 90, 128, 296
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	26, 140, 388
Kzo9I	GATC	4 cut(s)	12, 35, 132, 238
LmnI	GCTCC	2 cut(s)	170, 268
LweI	GCATC	2 cut(s)	333, 441
MaeI	CTAG	3 cut(s)	18, 335, 586
MaeII	ACGT	4 cut(s)	65, 90, 128, 296
MaeIII	GTNAC	1 cut(s)	528
MalI	GATC	4 cut(s)	14, 37, 134, 240
MboI	GATC	4 cut(s)	12, 35, 132, 238
MboII	GAAGA	6 cut(s)	47, 88, 98, 216, 248, 535
MflI	RGATCY	2 cut(s)	12, 238
MlyI	GAGTC	2 cut(s)	215, 254
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	8 cut(s)	63, 175, 267, 338, 381, 408, 454, 553
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	2 cut(s)	348, 503
MwoI	GCNNNNNNNGC	1 cut(s)	215
NcoI	CCATGG	2 cut(s)	136, 384
NdeII	GATC	4 cut(s)	12, 35, 132, 238
NlaIII	CATG	3 cut(s)	26, 140, 388
NmeAIII	GCCGAG	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	560
PceI	AGGCCT	2 cut(s)	102, 185
PinAI	ACCGGT	1 cut(s)	347
PleI	GAGTC	2 cut(s)	215, 253
PpsI	GAGTC	2 cut(s)	215, 253
PshAI	GACNNNNGTC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	12, 238
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	540
Sau3AI	GATC	4 cut(s)	12, 35, 132, 238
SchI	GAGTC	2 cut(s)	215, 254
SfaNI	GCATC	2 cut(s)	333, 441
SfcI	CTRYAG	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SseBI	AGGCCT	2 cut(s)	102, 185
SspMI	CTAG	3 cut(s)	18, 335, 586
StuI	AGGCCT	2 cut(s)	102, 185
StyI	CCWWGG	2 cut(s)	136, 384
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	4 cut(s)	68, 93, 131, 299
TaqI	TCGA	1 cut(s)	38
TaqII	GACCGA	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	2 cut(s)	65, 238
TspGWI	ACGGA	2 cut(s)	209, 348
TspRI	CASTG	2 cut(s)	65, 238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	3 cut(s)	18, 335, 586
ZraI	GACGTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.