Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009247

Physical Location & Seq

Genomic Coordinates Forward (+)

18840411 .. 18843053

Gene Structure 2643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGCCGGTAGATTTAGATAACTCCTCCACAGTTTCCGGTGAAGCAAGTGTTTCAATCTCATCCACCGGAAACCAAAACCCACTTCCAAACTCCACCGGAAAGAAGAAACGTAACCTCCCTGGCATGCCTGATCCAGAGTCAGAAGTTATAGCTTTATCACCAAAAACATTACTAGCAACAAACAGATTTGTTTGTGAAATCTGTAACAAAGGGTTTCAAAGAGACCAGAATCTTCAACTTCATCGTCGTGGACACAATTTACCATGGAAGCTTCGTCAGAAATCAAACAAAGAAGTGAAGAAAAAAGTCTATGTTTGTCCTGAAGTTAGTTGTGTTCATCACGACCCTTCACGTGCTTTAGGAGATCTAACTGGAATCAAGAAACACTTTTGTCGGAAACATGGTGAGAAGAAGTGGAAATGTGATAAATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGTACTCTGTTTTCTAGGAGGGATAGTTTTATAACGCATAGAGCTTTTTGTGATGCTTTGGCTGAAGAAAATGCGAGAAGTCATCATAGTCAGAGTAAGAAACAGAATCCTGAAATTTTGACCCGGAAAAACCCGGTACCCAACCCGGTTCCTGCTCCGGTGGATACTGAGTCTGCTAAAATCAAATCCTCCTCGACTTTAACAATTAAGCAATCAGAATCTCCAAAAACCCCTCCTGAAATCGTTCAAGAAGCTCCAAAACCGACCAGTTTAAATGTTGTTACAAGCAACGGTGTTTTCGCAGGCTTATTCGAATCTTCCTCGGCTTCTCCAAGTATATACACAACATCGTCTTCTTCGAAGAGTCTTTTCGCGTCATCTTCGTCCATTGAACCTATCTCTTTGGGTCTTTCAACAAGTCATGGATCATCCTTTCTTGGGTCAAACCGGTTCCACGCTCAGCCCGCGATGTCAGCAACCGCTTTACTTCAAAAAGCAGCTCAAATGGGAGCAGCTTCTTCAGGAGGTTCATTGCTTCACGGGTTAGGGATAGTTTCATCCACTTCAACTTCTATAGACGCAATAGTCCCTCATGGACTAGGATTAGGACTGCCTTGTGGTGGCGAAAGCAGCTCGGGTTTAAAAGAGCTTATGATGGGGAATTCATCGGTGTTTGGTCCGAAACAAACGACATTAGACTTCCTCGGTTTAGGTAGAGCGGTTGGTAACGGAAATGGTCCAAGTAACGGACTATCTACTCTAGTCGGAGGAGGAACCGGCATCGATATGGCAACAACATTTGGATCAGGAGAGTTTTCAGGGAAAGACATTAGTAGAAGAAAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009937 GO:0009966 GO:0010029 GO:0010154 GO:0010431 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023051 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048580 GO:0048583 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

452

Amino Acids

47.94

Weight (kDa)

9.44

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	100 - 134	1.2e-21	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	138 - 162	1.6e-14	BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD	PF22992	165 - 204	7.4e-24	BIRD-IDD transcription factor, fourth C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50700 AT5G66730
fragaria_vesca	FvH4_1g13710 FvH4_1g13710
malus_domestica	MD02G1151700.v1.1 MD15G1266200.v1.1
prunus_persica	Prupe.7G151500_v2.0.a1
pyrus_communis	pycom02g11890 pycom15g23170
rosa_chinensis	RchiOBHm_Chr2g0102031
rosa_laevigata	RLG00000017128
rosa_multiflora	Rmu_co7992216.1_g000001 Rmu_co8011972.1_g000001 Rmu_sc0020987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140800
rosa_rugosa	Rorug02G0104200.1 Rorug02G0104300
rosa_samantha	Rh2AG152300 Rh2BG157700 Rh2CG157600 Rh2DG157800
rosa_wichuraiana	Rw2G011890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	542
AasI	GACNNNNNNGTC	1 cut(s)	1094
Acc65I	GGTACC	1 cut(s)	646
AccB1I	GGYRCC	1 cut(s)	646
AccBSI	CCGCTC	1 cut(s)	1229
AccII	CGCG	2 cut(s)	884, 977
AciI	CCGC	3 cut(s)	975, 990, 1229
AclWI	GGATC	3 cut(s)	125, 943, 1321
AcsI	RAATTY	2 cut(s)	624, 1171
AcuI	CTGAAG	3 cut(s)	342, 594, 1014
AcvI	CACGTG	1 cut(s)	353
AfaI	GTAC	3 cut(s)	487, 514, 648
AfiI	CCNNNNNNNGG	3 cut(s)	948, 1130, 1256
AgeI	ACCGGT	1 cut(s)	957
AgsI	TTSAA	9 cut(s)	54, 218, 236, 452, 758, 902, 924, 1001, 1077
AjnI	CCWGG	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	9 cut(s)	152, 271, 467, 554, 764, 1010, 1025, 1143, 1159
AluI	AGCT	9 cut(s)	152, 271, 467, 554, 764, 1010, 1025, 1143, 1159
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	3 cut(s)	125, 943, 1321
Ama87I	CYCGRG	1 cut(s)	1144
ApeKI	GCWGC	3 cut(s)	1007, 1022, 1140
ApoI	RAATTY	2 cut(s)	624, 1171
AsiGI	ACCGGT	1 cut(s)	957
Asp700I	GAANNNNTTC	1 cut(s)	753
Asp718I	GGTACC	1 cut(s)	646
AspS9I	GGNCC	2 cut(s)	1187, 1247
AsuC2I	CCSGG	3 cut(s)	634, 644, 656
AsuHPI	GGTGA	3 cut(s)	50, 150, 416
AsuII	TTCGAA	2 cut(s)	822, 869
AvaI	CYCGRG	1 cut(s)	1144
AvaII	GGWCC	2 cut(s)	1187, 1247
BanI	GGYRCC	1 cut(s)	646
BbrPI	CACGTG	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	855
BbvI	GCAGC	3 cut(s)	1019, 1034, 1152
BccI	CCATC	1 cut(s)	1159
BciT130I	CCWGG	1 cut(s)	120
BciVI	GTATCC	1 cut(s)	667
BcnI	CCSGG	3 cut(s)	634, 644, 656
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	4 cut(s)	173, 525, 1109, 1271
BfmI	CTRYAG	1 cut(s)	1083
BfuI	GTATCC	1 cut(s)	667
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	3 cut(s)	1008, 1023, 1141
BlpI	GCTNAGC	1 cut(s)	969
BlsI	GCNGC	3 cut(s)	1009, 1024, 1142
Bme1390I	CCNGG	4 cut(s)	120, 634, 644, 656
Bme18I	GGWCC	2 cut(s)	1187, 1247
BmeT110I	CYCGRG	1 cut(s)	1144
BmgT120I	GGNCC	2 cut(s)	1187, 1247
BmiI	GGNNCC	4 cut(s)	648, 660, 962, 1285
BmrFI	CCNGG	4 cut(s)	120, 634, 644, 656
BmsI	GCATC	2 cut(s)	553, 1299
BpiI	GAAGAC	1 cut(s)	855
Bpu1102I	GCTNAGC	1 cut(s)	969
Bpu14I	TTCGAA	2 cut(s)	822, 869
BpuMI	CCSGG	3 cut(s)	634, 644, 656
Bsa29I	ATCGAT	1 cut(s)	1293
BsaAI	YACGTR	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	4 cut(s)	118, 263, 831, 1213
BsaWI	WCCGGW	5 cut(s)	35, 65, 95, 667, 957
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 520, 550
Bsc4I	CCNNNNNNNGG	3 cut(s)	948, 1130, 1256
Bse118I	RCCGGY	3 cut(s)	4, 957, 1286
Bse1I	ACTGG	2 cut(s)	376, 777
Bse3DI	GCAATG	1 cut(s)	1040
BseBI	CCWGG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	1293
BseDI	CCNNGG	4 cut(s)	118, 263, 831, 1213
BseGI	GGATG	3 cut(s)	59, 938, 1067
BseLI	CCNNNNNNNGG	3 cut(s)	948, 1130, 1256
BseMI	GCAATG	1 cut(s)	1040
BseMII	CTCAG	2 cut(s)	669, 983
BseNI	ACTGG	2 cut(s)	376, 777
BseRI	GAGGAG	3 cut(s)	13, 691, 1293
BseXI	GCAGC	3 cut(s)	1019, 1034, 1152
Bsh1236I	CGCG	2 cut(s)	884, 977
BshNI	GGYRCC	1 cut(s)	646
BshTI	ACCGGT	1 cut(s)	957
BshVI	ATCGAT	1 cut(s)	1293
BsiHKCI	CYCGRG	1 cut(s)	1144
BslFI	GGGAC	1 cut(s)	1082
BslI	CCNNNNNNNGG	3 cut(s)	948, 1130, 1256
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	1082
Bso31I	GGTCTC	1 cut(s)	216
BsoBI	CYCGRG	1 cut(s)	1144
Bsp119I	TTCGAA	2 cut(s)	822, 869
Bsp143I	GATC	4 cut(s)	130, 364, 935, 1313
Bsp1720I	GCTNAGC	1 cut(s)	969
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	3 cut(s)	975, 990, 1229
BspCNI	CTCAG	2 cut(s)	670, 982
BspDI	ATCGAT	1 cut(s)	1293
BspFNI	CGCG	2 cut(s)	884, 977
BspLI	GGNNCC	4 cut(s)	648, 660, 962, 1285
BspPI	GGATC	3 cut(s)	125, 943, 1321
BspT104I	TTCGAA	2 cut(s)	822, 869
BspT107I	GGYRCC	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	216
BsrBI	CCGCTC	1 cut(s)	1229
BsrDI	GCAATG	1 cut(s)	1040
BsrFI	RCCGGY	3 cut(s)	4, 957, 1286
BsrI	ACTGG	2 cut(s)	376, 777
BssAI	RCCGGY	3 cut(s)	4, 957, 1286
BssECI	CCNNGG	4 cut(s)	118, 263, 831, 1213
BssMI	GATC	4 cut(s)	130, 364, 935, 1313
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	31, 803
Bst6I	CTCTTC	1 cut(s)	866
BstBAI	YACGTR	1 cut(s)	353
BstBI	TTCGAA	2 cut(s)	822, 869
BstC8I	GCNNGC	3 cut(s)	125, 814, 975
BstDEI	CTNAG	3 cut(s)	435, 678, 969
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	3 cut(s)	59, 938, 1067
BstFNI	CGCG	2 cut(s)	884, 977
BstKTI	GATC	4 cut(s)	133, 367, 938, 1316
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	4 cut(s)	130, 364, 935, 1313
BstMWI	GCNNNNNNNGC	3 cut(s)	974, 983, 1140
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	4 cut(s)	118, 632, 642, 654
BstSFI	CTRYAG	1 cut(s)	1083
BstUI	CGCG	2 cut(s)	884, 977
BstV1I	GCAGC	3 cut(s)	1019, 1034, 1152
BstV2I	GAAGAC	1 cut(s)	855
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	1293
BsuI	GTATCC	1 cut(s)	667
BsuTUI	ATCGAT	1 cut(s)	1293
BtgI	CCRYGG	1 cut(s)	263
BtgZI	GCGATG	1 cut(s)	992
BtsCI	GGATG	3 cut(s)	59, 938, 1067
Cac8I	GCNNGC	3 cut(s)	125, 814, 975
Cfr10I	RCCGGY	3 cut(s)	4, 957, 1286
Cfr13I	GGNCC	2 cut(s)	1187, 1247
ClaI	ATCGAT	1 cut(s)	1293
CseI	GACGC	2 cut(s)	873, 1097
Csp6I	GTAC	3 cut(s)	486, 513, 647
CspAI	ACCGGT	1 cut(s)	957
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	5 cut(s)	124, 264, 401, 932, 1103
CviQI	GTAC	3 cut(s)	486, 513, 647
DdeI	CTNAG	3 cut(s)	435, 678, 969
DpnI	GATC	4 cut(s)	132, 366, 937, 1315
DpnII	GATC	4 cut(s)	130, 364, 935, 1313
DraI	TTTAAA	2 cut(s)	783, 1152
DrdI	GACNNNNNNGTC	1 cut(s)	1094
DseDI	GACNNNNNNGTC	1 cut(s)	1094
Eam1104I	CTCTTC	1 cut(s)	866
EarI	CTCTTC	1 cut(s)	866
Eco130I	CCWWGG	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	2 cut(s)	1187, 1247
Eco57I	CTGAAG	3 cut(s)	342, 594, 1014
Eco72I	CACGTG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	1144
EcoRI	GAATTC	1 cut(s)	1171
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	5 cut(s)	127, 267, 404, 935, 1106
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	1082
FatI	CATG	5 cut(s)	123, 263, 400, 931, 1102
FauI	CCCGC	1 cut(s)	982
Fnu4HI	GCNGC	3 cut(s)	1008, 1023, 1141
FokI	GGATG	3 cut(s)	46, 925, 1054
Fsp4HI	GCNGC	3 cut(s)	1008, 1023, 1141
FspBI	CTAG	4 cut(s)	173, 525, 1109, 1271
GluI	GCNGC	3 cut(s)	1008, 1023, 1141
HgaI	GACGC	2 cut(s)	873, 1097
Hin1II	CATG	5 cut(s)	127, 267, 404, 935, 1106
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	8 cut(s)	137, 229, 375, 616, 680, 728, 824, 874
HphI	GGTGA	3 cut(s)	50, 150, 416
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	8 cut(s)	142, 279, 396, 457, 603, 727, 1191, 1277
Hpy188III	TCNNGA	9 cut(s)	134, 320, 341, 379, 620, 746, 758, 1032, 1317
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	2 cut(s)	31, 803
HpyCH4IV	ACGT	2 cut(s)	109, 352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	974, 983, 1140
HpyF3I	CTNAG	3 cut(s)	435, 678, 969
HpySE526I	ACGT	2 cut(s)	109, 352
Hsp92II	CATG	5 cut(s)	127, 267, 404, 935, 1106
KpnI	GGTACC	1 cut(s)	650
Kzo9I	GATC	4 cut(s)	130, 364, 935, 1313
LmnI	GCTCC	3 cut(s)	670, 769, 1019
Lsp1109I	GCAGC	3 cut(s)	1019, 1034, 1152
LweI	GCATC	2 cut(s)	553, 1299
MaeI	CTAG	4 cut(s)	173, 525, 1109, 1271
MaeII	ACGT	2 cut(s)	109, 352
MaeIII	GTNAC	5 cut(s)	110, 203, 790, 1235, 1253
MalI	GATC	4 cut(s)	132, 366, 937, 1315
MbiI	CCGCTC	1 cut(s)	1229
MboI	GATC	4 cut(s)	130, 364, 935, 1313
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	4 cut(s)	256, 624, 714, 1171
MlyI	GAGTC	3 cut(s)	146, 689, 883
MmeI	TCCRAC	2 cut(s)	374, 1255
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	4 cut(s)	710, 717, 782, 1151
MslI	CAYNNNNRTG	2 cut(s)	246, 1295
MspR9I	CCNGG	4 cut(s)	120, 634, 644, 656
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	2 cut(s)	884, 977
MwoI	GCNNNNNNNGC	3 cut(s)	974, 983, 1140
NciI	CCSGG	3 cut(s)	634, 644, 656
NcoI	CCATGG	1 cut(s)	263
NdeII	GATC	4 cut(s)	130, 364, 935, 1313
NlaIII	CATG	5 cut(s)	127, 267, 404, 935, 1106
NlaIV	GGNNCC	4 cut(s)	648, 660, 962, 1285
NmeAIII	GCCGAG	1 cut(s)	812
NspI	RCATGY	1 cut(s)	127
NspV	TTCGAA	2 cut(s)	822, 869
PaeI	GCATGC	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	866
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	5 cut(s)	229, 375, 616, 728, 824
PinAI	ACCGGT	1 cut(s)	957
PkrI	GCNGC	3 cut(s)	1009, 1024, 1142
PleI	GAGTC	3 cut(s)	145, 688, 882
PmaCI	CACGTG	1 cut(s)	353
PmlI	CACGTG	1 cut(s)	353
PpsI	GAGTC	3 cut(s)	145, 688, 882
Ppu21I	YACGTR	1 cut(s)	353
PsiI	TTATAA	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	118
PspCI	CACGTG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	4 cut(s)	648, 660, 962, 1285
PspPI	GGNCC	2 cut(s)	1187, 1247
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	3 cut(s)	487, 514, 648
RsaNI	GTAC	3 cut(s)	486, 513, 647
RseI	CAYNNNNRTG	2 cut(s)	246, 1295
SaqAI	TTAA	4 cut(s)	710, 717, 782, 1151
SatI	GCNGC	3 cut(s)	1008, 1023, 1141
Sau3AI	GATC	4 cut(s)	130, 364, 935, 1313
Sau96I	GGNCC	2 cut(s)	1187, 1247
SchI	GAGTC	3 cut(s)	146, 689, 883
ScrFI	CCNGG	4 cut(s)	120, 634, 644, 656
SfaNI	GCATC	2 cut(s)	553, 1299
SfcI	CTRYAG	1 cut(s)	1083
SfuI	TTCGAA	2 cut(s)	822, 869
SinI	GGWCC	2 cut(s)	1187, 1247
SmiMI	CAYNNNNRTG	2 cut(s)	246, 1295
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	4 cut(s)	256, 624, 714, 1171
SsiI	CCGC	3 cut(s)	975, 990, 1229
SspMI	CTAG	4 cut(s)	173, 525, 1109, 1271
StyD4I	CCNGG	4 cut(s)	118, 632, 642, 654
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	31, 803
TaiI	ACGT	2 cut(s)	112, 355
TaqI	TCGA	4 cut(s)	704, 822, 869, 1293
TasI	AATT	4 cut(s)	256, 624, 714, 1171
TfiI	GAWTC	5 cut(s)	229, 375, 616, 728, 824
Tru1I	TTAA	4 cut(s)	710, 717, 782, 1151
Tru9I	TTAA	4 cut(s)	710, 717, 782, 1151
TseI	GCWGC	3 cut(s)	1007, 1022, 1140
TspDTI	ATGAA	5 cut(s)	230, 326, 1029, 1056, 1164
TspGWI	ACGGA	2 cut(s)	1254, 1272
VpaK11BI	GGWCC	2 cut(s)	1187, 1247
XapI	RAATTY	2 cut(s)	624, 1171
XceI	RCATGY	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	4 cut(s)	173, 525, 1109, 1271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.