FvH4_1g13710

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
7553261 .. 7556942
3682 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13710.t2

Sequence Viewer

Length: 1515 bp
ATGCCGACGGACTTGGATAACTCCTCCACAGCTTCAGGGGAGGCTAGTGTTTCTTCCTCCGGTAACCAAACTGCTCCGGCTCCAAAACCCATCACCAAGAAAAAGCGGAACTTGCCCGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTATGGCAACGAACCGATTTGTATGCGAAATTTGCAACAAAGGGTTTCAGAGAGATCAGAATCTGCAGCTCCATCGGCGAGGTCATAATCTGCCTTGGAAGTTGAGGCAGAGATCAAGCAAAGAGGTCAAGAAGAGAGTCTATGTCTGCCCTGAAGTTTCTTGCGTCCACCATGATCCTTCTAGAGCTTTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGCTCGAAGAAATATGCGGTTCAGTCGGATTGGAAAGCTCATTCTAAGATTTGTGGTACCAGGGAGTATAAATGTGATTGTGGGACTTTGTTTTCAAGGAGGGATAGCTTCATAACACACAGGGCTTTCTGTGATGCTTTGGCTGAGGAAAGTGCTAGAGGTCCTTCTCAGACTCAAAATGTGAAGTCGAATTCAGAATCAGACCCAAAGGTCCAAAGAGCAAATTCACCTCCACCTCCACCACCAGCACAGGCTTCAGTTCCATCCCAACCCTCAAGTTCTTCAGCTCCCTCTCAGCCACCAATTCTGCCTATTCAAAGTTCAGTGCCAGAGTTGCCTGAAAATCCCCCAGAAGATGCCCCTGTTGTGACTCAGCGGAAAGGACACTGTAGCAGCAGCAACAGCTCAAGCAGCAATGGTAGTACAAGCAGCAGTGTATTTGCAAGTTTATTTGCTTCATCGACAACATCTGGAGCAAGTTTGCAACCTCCTCAGCCTCCTGCATTTACAGACTTAATTCGAGCCATGGGGCAACCGGACCTACCAACTGACCTAGCACCATCTGCTTCAATCGAGCCTATCTCTCTTGGCCTCTCTACAAGTCATGCATCCTCAATTTTTGGGACTGCAGGACAGGAGCGTAGGCAGTATGCGCCTCCACCACAACCAGCTATGTCTGCCACGGCACTACTTCAGAAAGCTGCTCAAATGAGCGCAACATCTAATGCATCGTTGCTCCGTGGGTTTGGCATTGTGTCCTCCTCATCTTCTTCCGCAGAGCAAGAGAGCATGCAATGGAATCAGCGGCAAACAGAATCAGATAATGCCTCAATTGCTGCAGGGCTTGGACTTGGTCTTCCTTGTGATGGTTCTGGATGGAAGGAATTAATGATGGGAAGTCCTTCAATGTTTGGTCCTAAGCAAACCACACTTGATCTTTTGGGATTGGGAATGGCTGCCGGTAATAACCCCAATGGTGGCCTATCAGCCCTAATTACATCCATCAGTGGTGGTCTAGATGTGGCTGCTGCAGCTGCATCATTTGGAAGCGGAGAATATAGTGGCAAGGATTTGGCAAGGAGCTCATGA

Protein Analysis

505

Amino Acids

53.13

Weight (kDa)

8.96

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 99 - 133 1.4e-21 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 137 - 161 1.9e-14 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 164 - 202 1.6e-24 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 635
Acc65I GGTACC 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 482
AciI CCGC 6 cut(s) 106, 443, 802, 1200, 1231, 1476
AclWI GGATC 2 cut(s) 122, 335
AcsI RAATTY 3 cut(s) 195, 616, 649
AcuI CTGAAG 5 cut(s) 18, 339, 666, 693, 1103
AfaI GTAC 2 cut(s) 484, 850
AfiI CCNNNNNNNGG 2 cut(s) 1292, 1403
AgsI TTSAA 4 cut(s) 522, 743, 996, 1332
AjnI CCWGG 1 cut(s) 485
Alw21I GWGCWC 2 cut(s) 431, 1511
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 2 cut(s) 122, 335
AlwNI CAGNNNCTG 1 cut(s) 229
AoxI GGCC 2 cut(s) 1015, 1405
ApoI RAATTY 3 cut(s) 195, 616, 649
AseI ATTAAT 1 cut(s) 1313
Asp700I GAANNNNTTC 1 cut(s) 1327
Asp718I GGTACC 1 cut(s) 482
AspLEI GCGC 2 cut(s) 1081, 1142
AspS9I GGNCC 4 cut(s) 587, 637, 964, 1340
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 5 cut(s) 85, 154, 371, 413, 645
AvaII GGWCC 4 cut(s) 587, 637, 964, 1340
BanI GGYRCC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 1511
BbsI GAAGAC 2 cut(s) 167, 1274
Bbv12I GWGCWC 2 cut(s) 431, 1511
BbvCI CCTCAGC 2 cut(s) 570, 918
BccI CCATC 8 cut(s) 98, 246, 697, 994, 1286, 1296, 1312, 1436
BceAI ACGGC 1 cut(s) 1125
BcgI CGANNNNNNTGC 4 cut(s) 171, 205, 221, 255
BciT130I CCWGG 1 cut(s) 487
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 5 cut(s) 45, 348, 582, 980, 1442
BfmI CTRYAG 5 cut(s) 230, 814, 1053, 1263, 1455
Bme1390I CCNGG 2 cut(s) 117, 487
Bme18I GGWCC 4 cut(s) 587, 637, 964, 1340
BmgT120I GGNCC 4 cut(s) 587, 637, 964, 1340
BmiI GGNNCC 2 cut(s) 81, 484
BmrFI CCNGG 2 cut(s) 117, 487
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 6 cut(s) 124, 550, 772, 1043, 1163, 1472
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 2 cut(s) 167, 1274
BplI GAGNNNNNCTC 2 cut(s) 992, 1024
BpmI CTGGAG 1 cut(s) 918
Bpu10I CCTNAGC 3 cut(s) 570, 918, 1344
BpuEI CTTGAG 2 cut(s) 685, 817
BpuMI CCSGG 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 5 cut(s) 260, 486, 951, 1107, 1165
BsaWI WCCGGW 2 cut(s) 59, 961
Bsc4I CCNNNNNNNGG 2 cut(s) 1292, 1403
Bse118I RCCGGY 1 cut(s) 1385
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 2 cut(s) 847, 1226
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 5 cut(s) 260, 486, 951, 1107, 1165
BseGI GGATG 4 cut(s) 689, 1034, 1307, 1424
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 1292, 1403
BseMI GCAATG 2 cut(s) 847, 1226
BseMII CTCAG 5 cut(s) 561, 608, 734, 812, 932
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 3 cut(s) 13, 906, 1177
BshFI GGCC 2 cut(s) 1017, 1407
BshNI GGYRCC 1 cut(s) 482
BsiHKAI GWGCWC 2 cut(s) 431, 1511
BsiSI CCGG 5 cut(s) 60, 77, 117, 962, 1386
BslFI GGGAC 2 cut(s) 523, 1063
BslI CCNNNNNNNGG 2 cut(s) 1292, 1403
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 2 cut(s) 523, 1063
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 2 cut(s) 1017, 1407
Bsp1286I GDGCHC 2 cut(s) 431, 1511
Bsp143I GATC 6 cut(s) 127, 220, 278, 340, 361, 1360
Bsp19I CCATGG 1 cut(s) 951
BspACI CCGC 6 cut(s) 106, 443, 802, 1200, 1231, 1476
BspANI GGCC 2 cut(s) 1017, 1407
BspCNI CTCAG 5 cut(s) 562, 607, 733, 811, 931
BspHI TCATGA 1 cut(s) 1511
BspLI GGNNCC 2 cut(s) 81, 484
BspMAI CTGCAG 4 cut(s) 234, 1057, 1267, 1459
BspPI GGATC 2 cut(s) 122, 335
BspT107I GGYRCC 1 cut(s) 482
BsrDI GCAATG 2 cut(s) 847, 1226
BsrFI RCCGGY 1 cut(s) 1385
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 1385
BssECI CCNNGG 5 cut(s) 260, 486, 951, 1107, 1165
BssMI GATC 6 cut(s) 127, 220, 278, 340, 361, 1360
BssT1I CCWWGG 2 cut(s) 260, 951
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 2 cut(s) 401, 815
Bst6I CTCTTC 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 989
BstC8I GCNNGC 1 cut(s) 1217
BstDEI CTNAG 7 cut(s) 471, 570, 594, 720, 798, 918, 1344
BstDSI CCRYGG 3 cut(s) 951, 1107, 1165
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 4 cut(s) 689, 1034, 1307, 1424
BstHHI GCGC 2 cut(s) 1081, 1142
BstKTI GATC 6 cut(s) 130, 223, 281, 343, 364, 1363
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 6 cut(s) 127, 220, 278, 340, 361, 1360
BstNI CCWGG 1 cut(s) 487
BstNSI RCATGY 1 cut(s) 1219
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 115, 485
BstSFI CTRYAG 5 cut(s) 230, 814, 1053, 1263, 1455
BstV2I GAAGAC 2 cut(s) 167, 1274
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 2 cut(s) 1017, 1407
BtgI CCRYGG 3 cut(s) 951, 1107, 1165
BtsCI GGATG 4 cut(s) 689, 1034, 1307, 1424
BtsI GCAGTG 1 cut(s) 865
BtsIMutI CAGTG 4 cut(s) 756, 811, 865, 1438
Cac8I GCNNGC 1 cut(s) 1217
CaiI CAGNNNCTG 1 cut(s) 229
CciI TCATGA 1 cut(s) 1511
CfoI GCGC 2 cut(s) 1081, 1142
Cfr10I RCCGGY 1 cut(s) 1385
Cfr13I GGNCC 4 cut(s) 587, 637, 964, 1340
CseI GACGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 483, 849
CviAII CATG 5 cut(s) 338, 952, 1031, 1216, 1512
CviQI GTAC 2 cut(s) 483, 849
DdeI CTNAG 7 cut(s) 471, 570, 594, 720, 798, 918, 1344
DpnI GATC 6 cut(s) 129, 222, 280, 342, 363, 1362
DpnII GATC 6 cut(s) 127, 220, 278, 340, 361, 1360
DrdI GACNNNNNNGTC 1 cut(s) 635
DseDI GACNNNNNNGTC 1 cut(s) 635
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 1509
Eco130I CCWWGG 2 cut(s) 260, 951
Eco24I GRGCYC 1 cut(s) 1511
Eco47I GGWCC 4 cut(s) 587, 637, 964, 1340
Eco53kI GAGCTC 1 cut(s) 1509
Eco57I CTGAAG 5 cut(s) 18, 339, 666, 693, 1103
Eco91I GGTNACC 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 1509
EcoO109I RGGNCCY 1 cut(s) 587
EcoO65I GGTNACC 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 616
EcoRII CCWGG 1 cut(s) 485
EcoT14I CCWWGG 2 cut(s) 260, 951
EcoT22I ATGCAT 2 cut(s) 1036, 1156
EcoT38I GRGCYC 1 cut(s) 1511
ErhI CCWWGG 2 cut(s) 260, 951
FaeI CATG 5 cut(s) 341, 955, 1034, 1219, 1515
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 368, 400
FaqI GGGAC 2 cut(s) 523, 1063
FatI CATG 5 cut(s) 337, 951, 1030, 1215, 1511
FokI GGATG 4 cut(s) 676, 1021, 1314, 1411
FriOI GRGCYC 1 cut(s) 1511
FspBI CTAG 5 cut(s) 45, 348, 582, 980, 1442
GlaI GCGC 2 cut(s) 1080, 1141
GsuI CTGGAG 1 cut(s) 918
HaeIII GGCC 2 cut(s) 1017, 1407
HapII CCGG 5 cut(s) 60, 77, 117, 962, 1386
HgaI GACGC 1 cut(s) 319
HhaI GCGC 2 cut(s) 1081, 1142
Hin1II CATG 5 cut(s) 341, 955, 1034, 1219, 1515
Hin6I GCGC 2 cut(s) 1079, 1140
HinP1I GCGC 2 cut(s) 1079, 1140
HinfI GANTC 7 cut(s) 226, 303, 598, 623, 796, 1225, 1241
HpaII CCGG 5 cut(s) 60, 77, 117, 962, 1386
HphI GGTGA 5 cut(s) 85, 154, 371, 413, 645
Hpy166II GTNNAC 1 cut(s) 334
Hpy188III TCNNGA 7 cut(s) 131, 295, 348, 897, 1299, 1442, 1512
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 354, 600, 1300, 1338
HpyCH4III ACNGT 2 cut(s) 401, 815
HpyF3I CTNAG 7 cut(s) 471, 570, 594, 720, 798, 918, 1344
Hsp92II CATG 5 cut(s) 341, 955, 1034, 1219, 1515
HspAI GCGC 2 cut(s) 1079, 1140
KpnI GGTACC 1 cut(s) 486
Kzo9I GATC 6 cut(s) 127, 220, 278, 340, 361, 1360
LmnI GCTCC 8 cut(s) 79, 85, 240, 718, 899, 1063, 1167, 1506
LweI GCATC 6 cut(s) 124, 550, 772, 1043, 1163, 1472
MaeI CTAG 5 cut(s) 45, 348, 582, 980, 1442
MaeIII GTNAC 2 cut(s) 62, 793
MalI GATC 6 cut(s) 129, 222, 280, 342, 363, 1362
MboI GATC 6 cut(s) 127, 220, 278, 340, 361, 1360
MfeI CAATTG 1 cut(s) 1257
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 431, 1511
MluCI AATT 9 cut(s) 195, 616, 649, 729, 942, 1041, 1257, 1310, 1419
MlyI GAGTC 3 cut(s) 312, 592, 790
MmeI TCCRAC 1 cut(s) 432
Mph1103I ATGCAT 2 cut(s) 1036, 1156
MroXI GAANNNNTTC 1 cut(s) 1327
MseI TTAA 3 cut(s) 375, 941, 1313
MspA1I CMGCKG 3 cut(s) 802, 1231, 1460
MspI CCGG 5 cut(s) 60, 77, 117, 962, 1386
MspR9I CCNGG 2 cut(s) 117, 487
MunI CAATTG 1 cut(s) 1257
Mva1269I GAATGC 1 cut(s) 126
MvaI CCWGG 1 cut(s) 487
NciI CCSGG 1 cut(s) 117
NcoI CCATGG 1 cut(s) 951
NdeII GATC 6 cut(s) 127, 220, 278, 340, 361, 1360
NlaIII CATG 5 cut(s) 341, 955, 1034, 1219, 1515
NlaIV GGNNCC 2 cut(s) 81, 484
NmuCI GTSAC 1 cut(s) 793
NsiI ATGCAT 2 cut(s) 1036, 1156
NspI RCATGY 1 cut(s) 1219
PaeI GCATGC 1 cut(s) 1219
PagI TCATGA 1 cut(s) 1511
PctI GAATGC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 1327
PfeI GAWTC 4 cut(s) 226, 623, 1225, 1241
PflFI GACNNNGTC 1 cut(s) 1278
PleI GAGTC 3 cut(s) 311, 592, 790
PpsI GAGTC 3 cut(s) 311, 592, 790
PpuMI RGGWCCY 1 cut(s) 587
PshBI ATTAAT 1 cut(s) 1313
Psp124BI GAGCTC 1 cut(s) 1511
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 485
PspEI GGTNACC 1 cut(s) 62
PspGI CCWGG 1 cut(s) 485
PspN4I GGNNCC 2 cut(s) 81, 484
PspPI GGNCC 4 cut(s) 587, 637, 964, 1340
PspPPI RGGWCCY 1 cut(s) 587
PstI CTGCAG 4 cut(s) 234, 1057, 1267, 1459
PstNI CAGNNNCTG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 127
PsyI GACNNNGTC 1 cut(s) 1278
PvuII CAGCTG 1 cut(s) 1460
RsaI GTAC 2 cut(s) 484, 850
RsaNI GTAC 2 cut(s) 483, 849
SacI GAGCTC 1 cut(s) 1511
SaqAI TTAA 3 cut(s) 375, 941, 1313
Sau3AI GATC 6 cut(s) 127, 220, 278, 340, 361, 1360
Sau96I GGNCC 4 cut(s) 587, 637, 964, 1340
SchI GAGTC 3 cut(s) 312, 592, 790
ScrFI CCNGG 2 cut(s) 117, 487
SduI GDGCHC 2 cut(s) 431, 1511
SfaNI GCATC 6 cut(s) 124, 550, 772, 1043, 1163, 1472
SfcI CTRYAG 5 cut(s) 230, 814, 1053, 1263, 1455
SinI GGWCC 4 cut(s) 587, 637, 964, 1340
SmlI CTYRAG 2 cut(s) 700, 832
SmoI CTYRAG 2 cut(s) 700, 832
SphI GCATGC 1 cut(s) 1219
Sse9I AATT 9 cut(s) 195, 616, 649, 729, 942, 1041, 1257, 1310, 1419
SsiI CCGC 6 cut(s) 106, 443, 802, 1200, 1231, 1476
SspMI CTAG 5 cut(s) 45, 348, 582, 980, 1442
SstI GAGCTC 1 cut(s) 1511
StyD4I CCNGG 2 cut(s) 115, 485
StyI CCWWGG 2 cut(s) 260, 951
TaaI ACNGT 2 cut(s) 401, 815
TaqI TCGA 5 cut(s) 431, 614, 887, 946, 999
TasI AATT 9 cut(s) 195, 616, 649, 729, 942, 1041, 1257, 1310, 1419
TatI WGTACW 1 cut(s) 848
TauI GCSGC 1 cut(s) 1234
TfiI GAWTC 4 cut(s) 226, 623, 1225, 1241
Tru1I TTAA 3 cut(s) 375, 941, 1313
Tru9I TTAA 3 cut(s) 375, 941, 1313
TscAI CASTG 4 cut(s) 756, 818, 865, 1438
TseFI GTSAC 1 cut(s) 793
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 2 cut(s) 526, 873
TspGWI ACGGA 2 cut(s) 23, 1154
TspRI CASTG 4 cut(s) 756, 818, 865, 1438
Tth111I GACNNNGTC 1 cut(s) 1278
VpaK11BI GGWCC 4 cut(s) 587, 637, 964, 1340
VspI ATTAAT 1 cut(s) 1313
XapI RAATTY 3 cut(s) 195, 616, 649
XbaI TCTAGA 2 cut(s) 347, 1441
XceI RCATGY 1 cut(s) 1219
XmnI GAANNNNTTC 1 cut(s) 1327
XspI CTAG 5 cut(s) 45, 348, 582, 980, 1442
Zsp2I ATGCAT 2 cut(s) 1036, 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.