ZINC FINGER protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50700 AT5G66730 |
| fragaria_vesca | FvH4_1g13710 FvH4_1g13710 |
| malus_domestica | MD02G1151700.v1.1 MD15G1266200.v1.1 |
| prunus_persica | Prupe.7G151500_v2.0.a1 |
| pyrus_communis | pycom02g11890 pycom15g23170 |
| rosa_chinensis | RchiOBHm_Chr2g0102031 |
| rosa_laevigata | RLG00000017128 |
| rosa_multiflora | Rmu_co7992216.1_g000001 Rmu_co8011972.1_g000001 Rmu_sc0020987.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00140800 |
| rosa_rugosa | Rorug02G0104200.1 Rorug02G0104300 |
| rosa_samantha | Rh2AG152300 Rh2BG157700 Rh2CG157600 Rh2DG157800 |
| rosa_wichuraiana | Rw2G011890 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 479 |
| AccB1I | GGYRCC | 1 cut(s) | 479 |
| AccBSI | CCGCTC | 1 cut(s) | 1175 |
| AciI | CCGC | 7 cut(s) | 440, 1175, 1267, 1422, 1440, 1491, 1515 |
| AclWI | GGATC | 4 cut(s) | 119, 225, 1062, 1075 |
| AcoI | YGGCCR | 2 cut(s) | 168, 1419 |
| AcsI | RAATTY | 3 cut(s) | 192, 622, 628 |
| AcuI | CTGAAG | 3 cut(s) | 18, 1011, 1136 |
| AfaI | GTAC | 4 cut(s) | 481, 491, 886, 1003 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1328, 1377, 1442 |
| AgsI | TTSAA | 3 cut(s) | 519, 628, 953 |
| AjnI | CCWGG | 1 cut(s) | 112 |
| Alw21I | GWGCWC | 1 cut(s) | 333 |
| Alw26I | GTCTC | 1 cut(s) | 156 |
| Alw44I | GTGCAC | 1 cut(s) | 329 |
| AlwI | GGATC | 4 cut(s) | 119, 225, 1062, 1075 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 226, 1298 |
| AoxI | GGCC | 8 cut(s) | 168, 546, 583, 1048, 1082, 1379, 1419, 1477 |
| ApaLI | GTGCAC | 1 cut(s) | 329 |
| ApoI | RAATTY | 3 cut(s) | 192, 622, 628 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1366 |
| Asp718I | GGTACC | 1 cut(s) | 479 |
| AspLEI | GCGC | 2 cut(s) | 578, 1114 |
| AspS9I | GGNCC | 4 cut(s) | 546, 836, 1082, 1379 |
| AsuHPI | GGTGA | 6 cut(s) | 50, 151, 301, 368, 657, 744 |
| AsuNHI | GCTAGC | 1 cut(s) | 44 |
| AvaII | GGWCC | 1 cut(s) | 836 |
| BaeGI | GKGCMC | 1 cut(s) | 333 |
| BalI | TGGCCA | 1 cut(s) | 170 |
| BamHI | GGATCC | 1 cut(s) | 1067 |
| BanI | GGYRCC | 1 cut(s) | 479 |
| BanII | GRGCYC | 2 cut(s) | 321, 1550 |
| BbsI | GAAGAC | 1 cut(s) | 1212 |
| Bbv12I | GWGCWC | 1 cut(s) | 333 |
| BbvCI | CCTCAGC | 2 cut(s) | 266, 567 |
| BccI | CCATC | 6 cut(s) | 349, 733, 1027, 1322, 1335, 1351 |
| BceAI | ACGGC | 1 cut(s) | 412 |
| BciT130I | CCWGG | 1 cut(s) | 114 |
| BcoDI | GTCTC | 1 cut(s) | 156 |
| BfaI | CTAG | 2 cut(s) | 14, 45 |
| BfmI | CTRYAG | 7 cut(s) | 27, 227, 850, 1086, 1140, 1299, 1494 |
| BfoI | RGCGCY | 1 cut(s) | 579 |
| Bme1390I | CCNGG | 1 cut(s) | 114 |
| Bme18I | GGWCC | 1 cut(s) | 836 |
| BmgT120I | GGNCC | 4 cut(s) | 546, 836, 1082, 1379 |
| BmiI | GGNNCC | 2 cut(s) | 481, 1069 |
| BmrFI | CCNGG | 1 cut(s) | 114 |
| BmrI | ACTGGG | 1 cut(s) | 375 |
| BmsI | GCATC | 5 cut(s) | 121, 547, 938, 1199, 1511 |
| BmtI | GCTAGC | 1 cut(s) | 48 |
| BmuI | ACTGGG | 1 cut(s) | 375 |
| BpiI | GAAGAC | 1 cut(s) | 1212 |
| Bpu10I | CCTNAGC | 3 cut(s) | 266, 567, 1383 |
| BpuEI | CTTGAG | 1 cut(s) | 853 |
| BsaBI | GATNNNNATC | 1 cut(s) | 222 |
| BsaJI | CCNNGG | 3 cut(s) | 257, 984, 1063 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 61, 91, 580, 610 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1328, 1377, 1442 |
| Bse1I | ACTGG | 4 cut(s) | 370, 692, 776, 838 |
| Bse3DI | GCAATG | 2 cut(s) | 883, 1262 |
| Bse8I | GATNNNNATC | 1 cut(s) | 222 |
| BseBI | CCWGG | 1 cut(s) | 114 |
| BseDI | CCNNGG | 3 cut(s) | 257, 984, 1063 |
| BseGI | GGATG | 2 cut(s) | 1346, 1502 |
| BseJI | GATNNNNATC | 1 cut(s) | 222 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1328, 1377, 1442 |
| BseMI | GCAATG | 2 cut(s) | 883, 1262 |
| BseMII | CTCAG | 4 cut(s) | 257, 558, 743, 1305 |
| BseNI | ACTGG | 4 cut(s) | 370, 692, 776, 838 |
| BseRI | GAGGAG | 2 cut(s) | 66, 584 |
| BseSI | GKGCMC | 1 cut(s) | 333 |
| BseYI | CCCAGC | 1 cut(s) | 1436 |
| BsgI | GTGCAG | 1 cut(s) | 1221 |
| Bsh1285I | CGRYCG | 1 cut(s) | 9 |
| BshFI | GGCC | 8 cut(s) | 170, 548, 585, 1050, 1084, 1381, 1421, 1479 |
| BshNI | GGYRCC | 1 cut(s) | 479 |
| BsiEI | CGRYCG | 1 cut(s) | 9 |
| BsiHKAI | GWGCWC | 1 cut(s) | 333 |
| BslFI | GGGAC | 2 cut(s) | 520, 707 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1328, 1377, 1442 |
| BsmAI | GTCTC | 1 cut(s) | 156 |
| BsmFI | GGGAC | 2 cut(s) | 520, 707 |
| BsmI | GAATGC | 1 cut(s) | 123 |
| BsnI | GGCC | 8 cut(s) | 170, 548, 585, 1050, 1084, 1381, 1421, 1479 |
| Bsp1286I | GDGCHC | 3 cut(s) | 321, 333, 1550 |
| Bsp143I | GATC | 6 cut(s) | 124, 217, 358, 649, 1067, 1399 |
| Bsp19I | CCATGG | 3 cut(s) | 257, 984, 1063 |
| BspACI | CCGC | 7 cut(s) | 440, 1175, 1267, 1422, 1440, 1491, 1515 |
| BspANI | GGCC | 8 cut(s) | 170, 548, 585, 1050, 1084, 1381, 1421, 1479 |
| BspCNI | CTCAG | 4 cut(s) | 258, 559, 742, 1304 |
| BspHI | TCATGA | 1 cut(s) | 1550 |
| BspLI | GGNNCC | 2 cut(s) | 481, 1069 |
| BspMAI | CTGCAG | 4 cut(s) | 231, 1090, 1303, 1498 |
| BspOI | GCTAGC | 1 cut(s) | 48 |
| BspPI | GGATC | 4 cut(s) | 119, 225, 1062, 1075 |
| BspQI | GCTCTTC | 1 cut(s) | 1323 |
| BspT107I | GGYRCC | 1 cut(s) | 479 |
| BsrBI | CCGCTC | 1 cut(s) | 1175 |
| BsrDI | GCAATG | 2 cut(s) | 883, 1262 |
| BsrI | ACTGG | 4 cut(s) | 370, 692, 776, 838 |
| BssECI | CCNNGG | 3 cut(s) | 257, 984, 1063 |
| BssMI | GATC | 6 cut(s) | 124, 217, 358, 649, 1067, 1399 |
| BssT1I | CCWWGG | 3 cut(s) | 257, 984, 1063 |
| Bst2UI | CCWGG | 1 cut(s) | 114 |
| Bst4CI | ACNGT | 2 cut(s) | 179, 851 |
| Bst6I | CTCTTC | 3 cut(s) | 290, 954, 1323 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1187 |
| BstC8I | GCNNGC | 5 cut(s) | 46, 937, 941, 1086, 1272 |
| BstDEI | CTNAG | 6 cut(s) | 266, 567, 729, 1012, 1291, 1383 |
| BstDSI | CCRYGG | 3 cut(s) | 257, 984, 1063 |
| BstF5I | GGATG | 2 cut(s) | 1346, 1502 |
| BstH2I | RGCGCY | 1 cut(s) | 579 |
| BstHHI | GCGC | 2 cut(s) | 578, 1114 |
| BstKTI | GATC | 6 cut(s) | 127, 220, 361, 652, 1070, 1402 |
| BstMAI | GTCTC | 1 cut(s) | 156 |
| BstMBI | GATC | 6 cut(s) | 124, 217, 358, 649, 1067, 1399 |
| BstMCI | CGRYCG | 1 cut(s) | 9 |
| BstNI | CCWGG | 1 cut(s) | 114 |
| BstSCI | CCNGG | 1 cut(s) | 112 |
| BstSFI | CTRYAG | 7 cut(s) | 27, 227, 850, 1086, 1140, 1299, 1494 |
| BstSLI | GKGCMC | 1 cut(s) | 333 |
| BstV2I | GAAGAC | 1 cut(s) | 1212 |
| BstX2I | RGATCY | 2 cut(s) | 124, 1067 |
| BstYI | RGATCY | 2 cut(s) | 124, 1067 |
| BsuRI | GGCC | 8 cut(s) | 170, 548, 585, 1050, 1084, 1381, 1421, 1479 |
| BtgI | CCRYGG | 3 cut(s) | 257, 984, 1063 |
| BtsCI | GGATG | 2 cut(s) | 1346, 1502 |
| BtsI | GCAGTG | 1 cut(s) | 1145 |
| BtsIMutI | CAGTG | 3 cut(s) | 363, 783, 1145 |
| Cac8I | GCNNGC | 5 cut(s) | 46, 937, 941, 1086, 1272 |
| CaiI | CAGNNNCTG | 2 cut(s) | 226, 1298 |
| CciI | TCATGA | 1 cut(s) | 1550 |
| CfoI | GCGC | 2 cut(s) | 578, 1114 |
| Cfr13I | GGNCC | 4 cut(s) | 546, 836, 1082, 1379 |
| Csp6I | GTAC | 4 cut(s) | 480, 490, 885, 1002 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 457, 492 |
| CviAII | CATG | 6 cut(s) | 258, 335, 985, 1064, 1372, 1551 |
| CviQI | GTAC | 4 cut(s) | 480, 490, 885, 1002 |
| DdeI | CTNAG | 6 cut(s) | 266, 567, 729, 1012, 1291, 1383 |
| DpnI | GATC | 6 cut(s) | 126, 219, 360, 651, 1069, 1401 |
| DpnII | GATC | 6 cut(s) | 124, 217, 358, 649, 1067, 1399 |
| EaeI | YGGCCR | 2 cut(s) | 168, 1419 |
| Eam1104I | CTCTTC | 3 cut(s) | 290, 954, 1323 |
| EarI | CTCTTC | 3 cut(s) | 290, 954, 1323 |
| EciI | GGCGGA | 1 cut(s) | 1530 |
| Eco130I | CCWWGG | 3 cut(s) | 257, 984, 1063 |
| Eco147I | AGGCCT | 1 cut(s) | 1479 |
| Eco24I | GRGCYC | 2 cut(s) | 321, 1550 |
| Eco47I | GGWCC | 1 cut(s) | 836 |
| Eco57I | CTGAAG | 3 cut(s) | 18, 1011, 1136 |
| EcoO109I | RGGNCCY | 1 cut(s) | 546 |
| EcoRI | GAATTC | 1 cut(s) | 628 |
| EcoRII | CCWGG | 1 cut(s) | 112 |
| EcoT14I | CCWWGG | 3 cut(s) | 257, 984, 1063 |
| EcoT22I | ATGCAT | 1 cut(s) | 1192 |
| EcoT38I | GRGCYC | 2 cut(s) | 321, 1550 |
| ErhI | CCWWGG | 3 cut(s) | 257, 984, 1063 |
| FaeI | CATG | 6 cut(s) | 261, 338, 988, 1067, 1375, 1554 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 365, 397 |
| FaqI | GGGAC | 2 cut(s) | 520, 707 |
| FatI | CATG | 6 cut(s) | 257, 334, 984, 1063, 1371, 1550 |
| FokI | GGATG | 2 cut(s) | 1353, 1489 |
| FriOI | GRGCYC | 2 cut(s) | 321, 1550 |
| FspBI | CTAG | 2 cut(s) | 14, 45 |
| GlaI | GCGC | 2 cut(s) | 577, 1113 |
| GsaI | CCCAGC | 1 cut(s) | 1440 |
| HaeII | RGCGCY | 1 cut(s) | 579 |
| HaeIII | GGCC | 8 cut(s) | 170, 548, 585, 1050, 1084, 1381, 1421, 1479 |
| HhaI | GCGC | 2 cut(s) | 578, 1114 |
| Hin1II | CATG | 6 cut(s) | 261, 338, 988, 1067, 1375, 1554 |
| Hin6I | GCGC | 2 cut(s) | 576, 1112 |
| HinP1I | GCGC | 2 cut(s) | 576, 1112 |
| HindIII | AAGCTT | 1 cut(s) | 937 |
| HinfI | GANTC | 6 cut(s) | 223, 300, 607, 635, 991, 1261 |
| HphI | GGTGA | 6 cut(s) | 50, 151, 301, 368, 657, 744 |
| Hpy166II | GTNNAC | 1 cut(s) | 331 |
| Hpy188I | TCNGA | 7 cut(s) | 213, 222, 451, 634, 640, 840, 1155 |
| Hpy188III | TCNNGA | 5 cut(s) | 128, 345, 995, 1338, 1551 |
| Hpy8I | GTNNAC | 1 cut(s) | 331 |
| HpyAV | CCTTC | 5 cut(s) | 559, 708, 835, 1339, 1377 |
| HpyCH4III | ACNGT | 2 cut(s) | 179, 851 |
| HpyCH4IV | ACGT | 1 cut(s) | 103 |
| HpyF3I | CTNAG | 6 cut(s) | 266, 567, 729, 1012, 1291, 1383 |
| HpySE526I | ACGT | 1 cut(s) | 103 |
| Hsp92II | CATG | 6 cut(s) | 261, 338, 988, 1067, 1375, 1554 |
| HspAI | GCGC | 2 cut(s) | 576, 1112 |
| KpnI | GGTACC | 1 cut(s) | 483 |
| Kzo9I | GATC | 6 cut(s) | 124, 217, 358, 649, 1067, 1399 |
| LguI | GCTCTTC | 1 cut(s) | 1323 |
| LmnI | GCTCC | 3 cut(s) | 79, 1096, 1172 |
| LweI | GCATC | 5 cut(s) | 121, 547, 938, 1199, 1511 |
| MaeI | CTAG | 2 cut(s) | 14, 45 |
| MaeII | ACGT | 1 cut(s) | 103 |
| MaeIII | GTNAC | 3 cut(s) | 104, 778, 829 |
| MalI | GATC | 6 cut(s) | 126, 219, 360, 651, 1069, 1401 |
| MbiI | CCGCTC | 1 cut(s) | 1175 |
| MboI | GATC | 6 cut(s) | 124, 217, 358, 649, 1067, 1399 |
| MflI | RGATCY | 2 cut(s) | 124, 1067 |
| MhlI | GDGCHC | 3 cut(s) | 321, 333, 1550 |
| MlsI | TGGCCA | 1 cut(s) | 170 |
| MluCI | AATT | 8 cut(s) | 19, 192, 622, 628, 661, 785, 975, 1458 |
| MluNI | TGGCCA | 1 cut(s) | 170 |
| MlyI | GAGTC | 3 cut(s) | 309, 601, 1270 |
| MmeI | TCCRAC | 2 cut(s) | 429, 623 |
| Mox20I | TGGCCA | 1 cut(s) | 170 |
| Mph1103I | ATGCAT | 1 cut(s) | 1192 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1366 |
| MscI | TGGCCA | 1 cut(s) | 170 |
| MseI | TTAA | 1 cut(s) | 974 |
| MslI | CAYNNNNRTG | 1 cut(s) | 240 |
| Msp20I | TGGCCA | 1 cut(s) | 170 |
| MspA1I | CMGCKG | 7 cut(s) | 737, 827, 1267, 1424, 1440, 1493, 1499 |
| MspR9I | CCNGG | 1 cut(s) | 114 |
| Mva1269I | GAATGC | 1 cut(s) | 123 |
| MvaI | CCWGG | 1 cut(s) | 114 |
| NcoI | CCATGG | 3 cut(s) | 257, 984, 1063 |
| NdeII | GATC | 6 cut(s) | 124, 217, 358, 649, 1067, 1399 |
| NheI | GCTAGC | 1 cut(s) | 44 |
| NlaIII | CATG | 6 cut(s) | 261, 338, 988, 1067, 1375, 1554 |
| NlaIV | GGNNCC | 2 cut(s) | 481, 1069 |
| NmuCI | GTSAC | 2 cut(s) | 778, 829 |
| NsiI | ATGCAT | 1 cut(s) | 1192 |
| PagI | TCATGA | 1 cut(s) | 1550 |
| PceI | AGGCCT | 1 cut(s) | 1479 |
| PciSI | GCTCTTC | 1 cut(s) | 1323 |
| PctI | GAATGC | 1 cut(s) | 123 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1366 |
| PfeI | GAWTC | 3 cut(s) | 223, 635, 991 |
| PleI | GAGTC | 3 cut(s) | 308, 601, 1269 |
| PpsI | GAGTC | 3 cut(s) | 308, 601, 1269 |
| Psp6I | CCWGG | 1 cut(s) | 112 |
| PspFI | CCCAGC | 1 cut(s) | 1436 |
| PspGI | CCWGG | 1 cut(s) | 112 |
| PspN4I | GGNNCC | 2 cut(s) | 481, 1069 |
| PspPI | GGNCC | 4 cut(s) | 546, 836, 1082, 1379 |
| PstI | CTGCAG | 4 cut(s) | 231, 1090, 1303, 1498 |
| PstNI | CAGNNNCTG | 2 cut(s) | 226, 1298 |
| PsuI | RGATCY | 2 cut(s) | 124, 1067 |
| PvuII | CAGCTG | 3 cut(s) | 737, 827, 1499 |
| RsaI | GTAC | 4 cut(s) | 481, 491, 886, 1003 |
| RsaNI | GTAC | 4 cut(s) | 480, 490, 885, 1002 |
| RseI | CAYNNNNRTG | 1 cut(s) | 240 |
| SapI | GCTCTTC | 1 cut(s) | 1323 |
| SaqAI | TTAA | 1 cut(s) | 974 |
| Sau3AI | GATC | 6 cut(s) | 124, 217, 358, 649, 1067, 1399 |
| Sau96I | GGNCC | 4 cut(s) | 546, 836, 1082, 1379 |
| SbfI | CCTGCAGG | 1 cut(s) | 1090 |
| SchI | GAGTC | 3 cut(s) | 309, 601, 1270 |
| ScrFI | CCNGG | 1 cut(s) | 114 |
| SdaI | CCTGCAGG | 1 cut(s) | 1090 |
| SduI | GDGCHC | 3 cut(s) | 321, 333, 1550 |
| SfaNI | GCATC | 5 cut(s) | 121, 547, 938, 1199, 1511 |
| SfcI | CTRYAG | 7 cut(s) | 27, 227, 850, 1086, 1140, 1299, 1494 |
| SinI | GGWCC | 1 cut(s) | 836 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 240 |
| SmlI | CTYRAG | 1 cut(s) | 868 |
| SmoI | CTYRAG | 1 cut(s) | 868 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1090 |
| Sse9I | AATT | 8 cut(s) | 19, 192, 622, 628, 661, 785, 975, 1458 |
| SseBI | AGGCCT | 1 cut(s) | 1479 |
| SsiI | CCGC | 7 cut(s) | 440, 1175, 1267, 1422, 1440, 1491, 1515 |
| SspMI | CTAG | 2 cut(s) | 14, 45 |
| StuI | AGGCCT | 1 cut(s) | 1479 |
| StyD4I | CCNGG | 1 cut(s) | 112 |
| StyI | CCWWGG | 3 cut(s) | 257, 984, 1063 |
| TaaI | ACNGT | 2 cut(s) | 179, 851 |
| TaiI | ACGT | 1 cut(s) | 106 |
| TaqI | TCGA | 4 cut(s) | 278, 979, 1398, 1482 |
| TaqII | GACCGA | 1 cut(s) | 23 |
| TasI | AATT | 8 cut(s) | 19, 192, 622, 628, 661, 785, 975, 1458 |
| TatI | WGTACW | 3 cut(s) | 489, 884, 1001 |
| TauI | GCSGC | 4 cut(s) | 1178, 1270, 1424, 1493 |
| TfiI | GAWTC | 3 cut(s) | 223, 635, 991 |
| Tru1I | TTAA | 1 cut(s) | 974 |
| Tru9I | TTAA | 1 cut(s) | 974 |
| TscAI | CASTG | 3 cut(s) | 370, 783, 1152 |
| TseFI | GTSAC | 2 cut(s) | 778, 829 |
| Tsp45I | GTSAC | 2 cut(s) | 778, 829 |
| TspDTI | ATGAA | 3 cut(s) | 224, 523, 705 |
| TspGWI | ACGGA | 1 cut(s) | 629 |
| TspRI | CASTG | 3 cut(s) | 370, 783, 1152 |
| VneI | GTGCAC | 1 cut(s) | 329 |
| VpaK11BI | GGWCC | 1 cut(s) | 836 |
| XapI | RAATTY | 3 cut(s) | 192, 622, 628 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 163, 808 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1366 |
| XspI | CTAG | 2 cut(s) | 14, 45 |
| Zsp2I | ATGCAT | 1 cut(s) | 1192 |