Rh2DG157800

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
13222592 .. 13224764
2173 bp
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UTR
Exon/CDS
Intron
Rh2DG157800.1

Sequence Viewer

Length: 1515 bp
ATGCCGACCGACTTAGATAACTCCTCCACAGCTTCAGGGGAGGCCAGTGTTTCTTCCTCCGGTAACCAAACAGCTCCGGCTCCAAAACCCACCACCAAGAAAAAGCGAAACTTGCCGGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCCAAGACCCTTATGGCAACGAACCGATTTGTTTGCGAAATTTGCAACAAAGGGTTTCAGAGGGATCAGAATCTGCAGCTCCATCGGCGAGGTCATAATCTGCCGTGGAAGCTGAGGCAGAGATCGAGCAAAGAGATCAAGAAGAGAGTCTATGTCTGCCCTGAAGCTTCTTGTGTCCACCACGATCCTTCTAGAGCTTTGGGCGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCGAAGAAATACGCGGTTCAGTCGGATTGGAAAGCTCATTCTAAGATTTGTGGCACCAGAGAGTATAAATGTGATTGTGGGACTTTGTTTTCACGGAGGGATAGCTTCATAACACACAGGGCTTTCTGTGATGCTTTGGCTGAGGAAAGTGCTAGAGGTCCTTCTCAGACTCAAAATGTGAATTTGAATTCAGAATCAGACCCAAAGGTTCAAACAGTAAATTCACCTCCACCTCCAGCAGCAGCAGCAGCAGCAGTTCCATCCCAACCCACTAGTTCTTCAGCTCCGTCTCAGCCAGCAGCTCTGCCTATTCAGGGTTCAGTTGGAGTGCCAGAGTTGCCCGAAAATCCCCCAGAAGATGCCGCTGCTGTGACTCAGCGGAAAGGACACTGTAGCAGCAGCAACAGCTCAAGCAGCAACGGTAGTACAAGCAGTAGTGTATTTGCAAGTTTATTTGCTTCTTCGACAACATCTGGAGCAAGCTTGCAACCTCCTGCATTTACTGACTTAATTCGAGCCATGGGGCAACCGGATCAACCAACTGACCTAGCGCCATCTTCTTCAATTGAGCCTATCTCTCTTGGCCTCTCAACCAGTCACGCATCCTCAATTTTTGGATCTGCAGGACAGGAGCGTAGGCAGTATGCGCCTCCACCACAACCAGCTATGTCTGCCACTGCTCTACTTCAGAAAGCTGCTCAAATGGGTGCAGCAGCAACTAACGCATCGTTGTTTCGCGGGTTTGGCATTGTCTCCTCCTCATCTTCTTCCACACAGCAAGATAGCATGCAATGGAATCAGCGGCAAGCAGAATCGGACAGTGCCTCAATTGCTGCAGGGCTTGGACTTGGTCTTCCTTGTGATGGTTCTGGATGGAAGGAATTAATGATGGGAAGTCCTTCAATGTTTGGTCCCAAGCAAACCACACTTGATCTTTTGGGATTGGGAATGGCTGCCGGTAATAACCCCAATGGTGGCCTGTCAGCCCTAATTACATCCATTGGGGGTGGTATAGATGTGGCTGCTGCAGCTGCATCATTTGGAAGTGGAGAATACAGTGGCAAAGATTTGGCAAGGAGCTCATGA

Protein Analysis

504

Amino Acids

52.67

Weight (kDa)

8.89

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 99 - 133 1.3e-21 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 137 - 161 1.9e-14 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 164 - 202 1.3e-24 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 482
AccII CGCG 2 cut(s) 443, 1167
AciI CCGC 5 cut(s) 443, 792, 808, 1167, 1231
AclWI GGATC 5 cut(s) 122, 228, 335, 969, 1054
AcsI RAATTY 4 cut(s) 195, 610, 616, 649
AcuI CTGAAG 4 cut(s) 18, 339, 693, 1100
AfaI GTAC 1 cut(s) 856
AfiI CCNNNNNNNGG 3 cut(s) 743, 1292, 1403
AgsI TTSAA 4 cut(s) 616, 641, 993, 1332
AhlI ACTAGT 1 cut(s) 701
Alw21I GWGCWC 2 cut(s) 431, 1511
Alw26I GTCTC 3 cut(s) 159, 723, 1186
AlwI GGATC 5 cut(s) 122, 228, 335, 969, 1054
AlwNI CAGNNNCTG 1 cut(s) 229
AoxI GGCC 3 cut(s) 42, 1012, 1405
ApoI RAATTY 4 cut(s) 195, 610, 616, 649
AseI ATTAAT 1 cut(s) 1313
Asp700I GAANNNNTTC 1 cut(s) 1327
AspLEI GCGC 2 cut(s) 982, 1078
AspS9I GGNCC 2 cut(s) 587, 1340
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 154, 645
AvaII GGWCC 2 cut(s) 587, 1340
BanI GGYRCC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 1511
BbsI GAAGAC 1 cut(s) 1274
Bbv12I GWGCWC 2 cut(s) 431, 1511
BbvCI CCTCAGC 2 cut(s) 269, 570
BccI CCATC 6 cut(s) 246, 697, 991, 1286, 1296, 1312
BceAI ACGGC 2 cut(s) 244, 415
BcgI CGANNNNNNTGC 4 cut(s) 171, 205, 221, 255
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 3 cut(s) 159, 723, 1186
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 4 cut(s) 348, 582, 702, 977
BfmI CTRYAG 5 cut(s) 230, 820, 1050, 1263, 1455
BfoI RGCGCY 1 cut(s) 983
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 587, 1340
BmgT120I GGNCC 2 cut(s) 587, 1340
BmiI GGNNCC 3 cut(s) 81, 484, 1342
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 6 cut(s) 124, 550, 778, 1040, 1163, 1472
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 1274
BplI GAGNNNNNCTC 2 cut(s) 989, 1021
BpmI CTGGAG 2 cut(s) 648, 924
Bpu10I CCTNAGC 2 cut(s) 269, 570
BpuEI CTTGAG 1 cut(s) 823
BpuMI CCSGG 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 260, 948
BsaWI WCCGGW 2 cut(s) 59, 958
Bsc4I CCNNNNNNNGG 3 cut(s) 743, 1292, 1403
Bse118I RCCGGY 1 cut(s) 1385
Bse1I ACTGG 3 cut(s) 45, 373, 1023
Bse3DI GCAATG 1 cut(s) 1226
Bse8I GATNNNNATC 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 260, 948
BseGI GGATG 4 cut(s) 689, 1031, 1307, 1424
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 743, 1292, 1403
BseMI GCAATG 1 cut(s) 1226
BseMII CTCAG 5 cut(s) 260, 561, 608, 734, 818
BseNI ACTGG 3 cut(s) 45, 373, 1023
BseRI GAGGAG 3 cut(s) 13, 1174, 1177
BsgI GTGCAG 1 cut(s) 1158
Bsh1236I CGCG 2 cut(s) 443, 1167
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 44, 1014, 1407
BshNI GGYRCC 1 cut(s) 482
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 431, 1511
BsiSI CCGG 5 cut(s) 60, 77, 116, 959, 1386
BslFI GGGAC 2 cut(s) 523, 1326
BslI CCNNNNNNNGG 3 cut(s) 743, 1292, 1403
BsmAI GTCTC 3 cut(s) 159, 723, 1186
BsmBI CGTCTC 1 cut(s) 723
BsmFI GGGAC 2 cut(s) 523, 1326
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 3 cut(s) 44, 1014, 1407
Bsp1286I GDGCHC 2 cut(s) 431, 1511
Bsp143I GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 961, 1046, 1360
Bsp19I CCATGG 1 cut(s) 948
BspACI CCGC 5 cut(s) 443, 792, 808, 1167, 1231
BspANI GGCC 3 cut(s) 44, 1014, 1407
BspCNI CTCAG 5 cut(s) 261, 562, 607, 733, 817
BspFNI CGCG 2 cut(s) 443, 1167
BspHI TCATGA 1 cut(s) 1511
BspLI GGNNCC 3 cut(s) 81, 484, 1342
BspMAI CTGCAG 4 cut(s) 234, 1054, 1267, 1459
BspPI GGATC 5 cut(s) 122, 228, 335, 969, 1054
BspT107I GGYRCC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 1226
BsrFI RCCGGY 1 cut(s) 1385
BsrI ACTGG 3 cut(s) 45, 373, 1023
BssAI RCCGGY 1 cut(s) 1385
BssECI CCNNGG 2 cut(s) 260, 948
BssMI GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 961, 1046, 1360
BssT1I CCWWGG 1 cut(s) 948
Bst4CI ACNGT 5 cut(s) 646, 821, 851, 1250, 1487
Bst6I CTCTTC 1 cut(s) 293
BstC8I GCNNGC 5 cut(s) 726, 910, 914, 1217, 1236
BstDEI CTNAG 7 cut(s) 13, 269, 471, 570, 594, 720, 804
BstDSI CCRYGG 2 cut(s) 260, 948
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 4 cut(s) 689, 1031, 1307, 1424
BstFNI CGCG 2 cut(s) 443, 1167
BstH2I RGCGCY 1 cut(s) 983
BstHHI GCGC 2 cut(s) 982, 1078
BstKTI GATC 9 cut(s) 130, 223, 281, 294, 343, 364, 964, 1049, 1363
BstMAI GTCTC 3 cut(s) 159, 723, 1186
BstMBI GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 961, 1046, 1360
BstMCI CGRYCG 1 cut(s) 9
BstNSI RCATGY 1 cut(s) 1219
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 5 cut(s) 230, 820, 1050, 1263, 1455
BstUI CGCG 2 cut(s) 443, 1167
BstV2I GAAGAC 1 cut(s) 1274
BstX2I RGATCY 2 cut(s) 127, 1046
BstYI RGATCY 2 cut(s) 127, 1046
BsuRI GGCC 3 cut(s) 44, 1014, 1407
BtgI CCRYGG 2 cut(s) 260, 948
BtsCI GGATG 4 cut(s) 689, 1031, 1307, 1424
BtsI GCAGTG 1 cut(s) 1104
BtsIMutI CAGTG 5 cut(s) 52, 817, 1104, 1255, 1492
Cac8I GCNNGC 5 cut(s) 726, 910, 914, 1217, 1236
CaiI CAGNNNCTG 1 cut(s) 229
CciI TCATGA 1 cut(s) 1511
CfoI GCGC 2 cut(s) 982, 1078
Cfr10I RCCGGY 1 cut(s) 1385
Cfr13I GGNCC 2 cut(s) 587, 1340
Csp6I GTAC 1 cut(s) 855
CviAII CATG 3 cut(s) 949, 1216, 1512
CviQI GTAC 1 cut(s) 855
DdeI CTNAG 7 cut(s) 13, 269, 471, 570, 594, 720, 804
DpnI GATC 9 cut(s) 129, 222, 280, 293, 342, 363, 963, 1048, 1362
DpnII GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 961, 1046, 1360
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 1509
Eco130I CCWWGG 1 cut(s) 948
Eco24I GRGCYC 1 cut(s) 1511
Eco47I GGWCC 2 cut(s) 587, 1340
Eco53kI GAGCTC 1 cut(s) 1509
Eco57I CTGAAG 4 cut(s) 18, 339, 693, 1100
Eco91I GGTNACC 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 1509
EcoO109I RGGNCCY 1 cut(s) 587
EcoO65I GGTNACC 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 948
EcoT38I GRGCYC 1 cut(s) 1511
ErhI CCWWGG 1 cut(s) 948
Esp3I CGTCTC 1 cut(s) 723
FaeI CATG 3 cut(s) 952, 1219, 1515
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 368, 400
FaqI GGGAC 2 cut(s) 523, 1326
FatI CATG 3 cut(s) 948, 1215, 1511
FauI CCCGC 1 cut(s) 1160
FokI GGATG 4 cut(s) 676, 1018, 1314, 1411
FriOI GRGCYC 1 cut(s) 1511
FspBI CTAG 4 cut(s) 348, 582, 702, 977
GlaI GCGC 2 cut(s) 981, 1077
GsuI CTGGAG 2 cut(s) 648, 924
HaeII RGCGCY 1 cut(s) 983
HaeIII GGCC 3 cut(s) 44, 1014, 1407
HapII CCGG 5 cut(s) 60, 77, 116, 959, 1386
HhaI GCGC 2 cut(s) 982, 1078
Hin1II CATG 3 cut(s) 952, 1219, 1515
Hin6I GCGC 2 cut(s) 980, 1076
HinP1I GCGC 2 cut(s) 980, 1076
HindIII AAGCTT 2 cut(s) 321, 910
HinfI GANTC 7 cut(s) 226, 303, 598, 623, 802, 1225, 1241
HpaII CCGG 5 cut(s) 60, 77, 116, 959, 1386
HphI GGTGA 2 cut(s) 154, 645
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 9 cut(s) 216, 225, 366, 454, 597, 622, 628, 1119, 1246
Hpy188III TCNNGA 6 cut(s) 131, 295, 348, 903, 1299, 1512
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 4 cut(s) 354, 600, 1300, 1338
HpyCH4III ACNGT 5 cut(s) 646, 821, 851, 1250, 1487
HpyF3I CTNAG 7 cut(s) 13, 269, 471, 570, 594, 720, 804
Hsp92II CATG 3 cut(s) 952, 1219, 1515
HspAI GCGC 2 cut(s) 980, 1076
Kzo9I GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 961, 1046, 1360
LmnI GCTCC 7 cut(s) 79, 85, 240, 718, 905, 1060, 1506
LweI GCATC 6 cut(s) 124, 550, 778, 1040, 1163, 1472
MaeI CTAG 4 cut(s) 348, 582, 702, 977
MaeIII GTNAC 3 cut(s) 62, 799, 1025
MalI GATC 9 cut(s) 129, 222, 280, 293, 342, 363, 963, 1048, 1362
MboI GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 961, 1046, 1360
MfeI CAATTG 2 cut(s) 993, 1257
MflI RGATCY 2 cut(s) 127, 1046
MhlI GDGCHC 2 cut(s) 431, 1511
MlyI GAGTC 3 cut(s) 312, 592, 796
MmeI TCCRAC 2 cut(s) 432, 733
MroXI GAANNNNTTC 1 cut(s) 1327
MseI TTAA 3 cut(s) 375, 938, 1313
MspA1I CMGCKG 4 cut(s) 794, 808, 1231, 1460
MspI CCGG 5 cut(s) 60, 77, 116, 959, 1386
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 2 cut(s) 993, 1257
Mva1269I GAATGC 1 cut(s) 126
MvnI CGCG 2 cut(s) 443, 1167
NciI CCSGG 1 cut(s) 117
NcoI CCATGG 1 cut(s) 948
NdeII GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 961, 1046, 1360
NlaIII CATG 3 cut(s) 952, 1219, 1515
NlaIV GGNNCC 3 cut(s) 81, 484, 1342
NmuCI GTSAC 2 cut(s) 799, 1025
NspI RCATGY 1 cut(s) 1219
PaeI GCATGC 1 cut(s) 1219
PagI TCATGA 1 cut(s) 1511
PctI GAATGC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 1327
PfeI GAWTC 4 cut(s) 226, 623, 1225, 1241
PflFI GACNNNGTC 1 cut(s) 1278
PleI GAGTC 3 cut(s) 311, 592, 796
PpsI GAGTC 3 cut(s) 311, 592, 796
PpuMI RGGWCCY 1 cut(s) 587
PshBI ATTAAT 1 cut(s) 1313
Psp124BI GAGCTC 1 cut(s) 1511
Psp5II RGGWCCY 1 cut(s) 587
PspEI GGTNACC 1 cut(s) 62
PspN4I GGNNCC 3 cut(s) 81, 484, 1342
PspPI GGNCC 2 cut(s) 587, 1340
PspPPI RGGWCCY 1 cut(s) 587
PstI CTGCAG 4 cut(s) 234, 1054, 1267, 1459
PstNI CAGNNNCTG 1 cut(s) 229
PsuI RGATCY 2 cut(s) 127, 1046
PsyI GACNNNGTC 1 cut(s) 1278
PvuII CAGCTG 1 cut(s) 1460
RsaI GTAC 1 cut(s) 856
RsaNI GTAC 1 cut(s) 855
SacI GAGCTC 1 cut(s) 1511
SaqAI TTAA 3 cut(s) 375, 938, 1313
Sau3AI GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 961, 1046, 1360
Sau96I GGNCC 2 cut(s) 587, 1340
SchI GAGTC 3 cut(s) 312, 592, 796
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 2 cut(s) 431, 1511
SfaNI GCATC 6 cut(s) 124, 550, 778, 1040, 1163, 1472
SfcI CTRYAG 5 cut(s) 230, 820, 1050, 1263, 1455
SinI GGWCC 2 cut(s) 587, 1340
SmlI CTYRAG 1 cut(s) 838
SmoI CTYRAG 1 cut(s) 838
SpeI ACTAGT 1 cut(s) 701
SphI GCATGC 1 cut(s) 1219
SsiI CCGC 5 cut(s) 443, 792, 808, 1167, 1231
SspMI CTAG 4 cut(s) 348, 582, 702, 977
SstI GAGCTC 1 cut(s) 1511
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 948
TaaI ACNGT 5 cut(s) 646, 821, 851, 1250, 1487
TaqI TCGA 4 cut(s) 281, 431, 893, 943
TaqII GACCGA 1 cut(s) 23
TatI WGTACW 1 cut(s) 854
TauI GCSGC 2 cut(s) 794, 1234
TfiI GAWTC 4 cut(s) 226, 623, 1225, 1241
Tru1I TTAA 3 cut(s) 375, 938, 1313
Tru9I TTAA 3 cut(s) 375, 938, 1313
TscAI CASTG 5 cut(s) 52, 824, 1111, 1255, 1492
TseFI GTSAC 2 cut(s) 799, 1025
Tsp45I GTSAC 2 cut(s) 799, 1025
TspDTI ATGAA 1 cut(s) 526
TspGWI ACGGA 2 cut(s) 538, 705
TspRI CASTG 5 cut(s) 52, 824, 1111, 1255, 1492
Tth111I GACNNNGTC 1 cut(s) 1278
VpaK11BI GGWCC 2 cut(s) 587, 1340
VspI ATTAAT 1 cut(s) 1313
XapI RAATTY 4 cut(s) 195, 610, 616, 649
XbaI TCTAGA 1 cut(s) 347
XceI RCATGY 1 cut(s) 1219
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 1327
XspI CTAG 4 cut(s) 348, 582, 702, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.