Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009247

Physical Location & Seq

Genomic Coordinates Reverse (-)

8898454 .. 8901362

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0104300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGGTGATTCTGTTTCTCTCCCTTCTGTTGTTGCCGGCGGCGGCTTTCACCGACGCTCAGACCTACGAGGTGAAACCCTACCAGTTCGGTCCCTTTGATCCAACATATTACGACAGGTTCGCCGTCCTCAGCCCCGCCACGATCAACTCAGGAGCTCTTCAGATCACGCCGGACTCCGCCAATGGCAACTTCAGCATGACCAACAAGTCAGGTAGGATCTTGTGTAGGATCTTGTACAACCAGTCTTTCACCCTCTGGAACTCTGATGTCAACTCTTCTTCTCCGGGATACGTCGCCTCTTTCAACTCGTCCTTCCTCATTAACGTCTATCGTCTCAACAGCTCCCGCATCCCCGAGGACTCCGCCGTCCCCGGCGAGGGCCTCGCCTTCATTATAGCCCCGGATTTGACCCTCCCGGAAAACAGCGCCGGTCAATATCTCGGTTTGACCAACGCCACCACCGACGGTAACGCCACCAACCAGTTGGTGGCAATTGAGCTGGACACTTTGAAGGAGGGCTTCGATCCGGACAGCAACCACATGGGGCTGAATATCAACTCAGTTAAGTCTAACAAGACTGTCCCGCTTTCGGACTATGGGATCGAGATCGCGCCACCAGGCAAGGTGTTTTATATGGTGTGGATCCAATACGACGGTGGGTCACATAATCTGTCGGTGTTCATGGCCAACCAGACCGATCAGAAAACGGACAAGAAAGGAGCGTTTGTTAATATCCGGCCTCGGCCCACCAGCCCAATTCTAACCGCCAACATTAACCTCAAGGACATTGTCAAGCAAAAGTCCTACTTCGGATTCGCCGCGTCCACCGGAAGTTACATCCAGCTCAACTGCGTGTTGATGTGGAATCTAACGGTGGAGATTCTGCCGGATGTGGAAGGGGGAGGGGACAAAAATAAGGTGTTGAAGATAGCACTGGGGGTGGGTGCGGGGTTGGTTTTGGTCCTACTGTGTTTAGTCGGGGTGGTTTGTTATGCATACAAAAAGTGGAAGGCTAGAGCGTCGGACCCGAACATTTTGGGCGCGCTGAAAAGCCTTCCCGAAACACCGAAGGAGTTCAGTTACCGAGAGCTCAAGAAAGCCACCAACAACTTCGACGATAAGCACAAACTAGGTCAAGGTGGGTTCGGGGTGTTGTACCGAGCTGTGCTAGCTAAGGAGGATAACCTCGAAGTGGCAGTGAAGATGTTCTCGAGGGACGAGGTCAAGGGTAGGGACGACTTTTTGGCCGAGCTCACCATCATTAACCGTCTCCGGCACAAACACCTCGTTCGGTTACTCGGTTGGTGCCACAAGAATGGGATGCTTCTCATAGTGTACGAGTACATGCCAAACGGGAGCTTGGACAACCACCTATTCTCCGGGCCGGAAAATGCAACCCTAGAATGGAAACAGAGGTACAAGATTGTCACGGGTGTGATCTCGGCCCTGCACTACCTCCACAACGAGTACAACCAAAGAGTAGTCCACAGAGACCTCAAGGCTAGCAACATAATGCTTGACACCTATTTCAATGCTTGTCTGGGCGACTTCGGCCTGGCGCGCGCCTTGGACAATGAAAAGACCTCATACGCTGAACTCGAAGGTGTCCCGGGCACCATGGGGTACATTGCCCCTGAGTGCTTCCACACGGGAAAAGCCACATGTGAGTCTGACGTGTACGGGTTCGGGGCGGTGGTTTTAGAAGTTGTTTGCGGTCAACGACCGTGGACTAAAATCGGTGGATACCAATTTCTAGTGGATTGGGTATGGTCTTTGCATAGAGAAGGGCGTGTGCTTGAGGCTGTCGATGAGAGGTTGGGTAATGACTACGTGGTTGAAGAAGCCCAAAGGCTTTTGCTTCTTGGGCTGGCTTGTTCGCATCCGATTGCGAACGAGAGGCCCAAGACCCAAACCATAATCCAAATCATTTCTGGGTCGGTATTGGTGCCCCGAGTCCCTTCTTTCAAACCATCTTTCGTGTGGCCTTCTGTGCCTGAAGGAGTGAGCAGCATTGCCAACAGGGTTAACACGACGTCGTCGTGGCCTGTCGGGATGTCAGCTTTCGATAGGTCTGAGTGGAGCCCACATTTGGACAGCAGTGATAGCCTGGACCGGTATGGAGGAACAGGCATATATGGTGACAGCTCTTCCCTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009937 GO:0009966 GO:0010029 GO:0010154 GO:0010431 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023051 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048580 GO:0048583 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

719

Amino Acids

79.34

Weight (kDa)

6.1

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	37 - 293	3.4e-55	Legume lectin domain
Pkinase	PF00069	372 - 579	7.8e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	374 - 584	6.1e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50700 AT5G66730
fragaria_vesca	FvH4_1g13710 FvH4_1g13710
malus_domestica	MD02G1151700.v1.1 MD15G1266200.v1.1
prunus_persica	Prupe.7G151500_v2.0.a1
pyrus_communis	pycom02g11890 pycom15g23170
rosa_chinensis	RchiOBHm_Chr2g0102031
rosa_laevigata	RLG00000017128
rosa_multiflora	Rmu_co7992216.1_g000001 Rmu_co8011972.1_g000001 Rmu_sc0020987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140800
rosa_rugosa	Rorug02G0104200.1 Rorug02G0104300
rosa_samantha	Rh2AG152300 Rh2BG157700 Rh2CG157600 Rh2DG157800
rosa_wichuraiana	Rw2G011890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	205, 365
AatII	GACGTC	1 cut(s)	2036
AccB1I	GGYRCC	3 cut(s)	1305, 1613, 1945
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccII	CGCG	5 cut(s)	611, 821, 1043, 1561, 1563
AccIII	TCCGGA	1 cut(s)	526
AclWI	GGATC	7 cut(s)	92, 224, 236, 518, 608, 637, 650
AcoI	YGGCCR	2 cut(s)	684, 1245
AcuI	CTGAAG	3 cut(s)	143, 175, 2016
AcyI	GRCGYC	1 cut(s)	2033
AfaI	GTAC	8 cut(s)	236, 1157, 1337, 1343, 1418, 1469, 1625, 1679
AfiI	CCNNNNNNNGG	7 cut(s)	376, 377, 487, 589, 1192, 1404, 2089
AflIII	ACRYGT	2 cut(s)	1661, 1674
AgeI	ACCGGT	1 cut(s)	2112
AgsI	TTSAA	6 cut(s)	304, 511, 925, 1531, 1838, 1966
AhdI	GACNNNNNGTC	1 cut(s)	658
AjiI	CACGTC	1 cut(s)	1675
AjnI	CCWGG	4 cut(s)	616, 1554, 2106, 2151
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AleI	CACNNNNGTG	1 cut(s)	1433
Alw21I	GWGCWC	3 cut(s)	157, 1092, 1254
Alw26I	GTCTC	3 cut(s)	338, 1274, 1485
AlwI	GGATC	7 cut(s)	92, 224, 236, 518, 608, 637, 650
Ama87I	CYCGRG	4 cut(s)	353, 1210, 1609, 1950
Aor13HI	TCCGGA	1 cut(s)	526
ApeKI	GCWGC	1 cut(s)	2007
AsiGI	ACCGGT	1 cut(s)	2112
Asp700I	GAANNNNTTC	2 cut(s)	1073, 1205
AspLEI	GCGC	7 cut(s)	428, 613, 1043, 1045, 1561, 1563, 1565
AspS9I	GGNCC	9 cut(s)	89, 379, 744, 961, 1024, 1382, 1444, 1899, 2110
AsuC2I	CCSGG	7 cut(s)	285, 372, 401, 416, 1381, 1610, 1611
AsuHPI	GGTGA	6 cut(s)	16, 40, 82, 241, 1246, 2150
AsuNHI	GCTAGC	2 cut(s)	1168, 1502
AvaI	CYCGRG	4 cut(s)	353, 1210, 1609, 1950
AvaII	GGWCC	4 cut(s)	89, 961, 1024, 2110
BaeGI	GKGCMC	2 cut(s)	1616, 1950
BalI	TGGCCA	1 cut(s)	686
BamHI	GGATCC	1 cut(s)	642
BanI	GGYRCC	3 cut(s)	1305, 1613, 1945
BanII	GRGCYC	4 cut(s)	157, 1092, 1254, 2084
Bbv12I	GWGCWC	3 cut(s)	157, 1092, 1254
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	2019
BccI	CCATC	2 cut(s)	1265, 1978
BceAI	ACGGC	2 cut(s)	107, 350
BciT130I	CCWGG	4 cut(s)	618, 1556, 2108, 2153
BciVI	GTATCC	2 cut(s)	281, 1736
BcnI	CCSGG	7 cut(s)	285, 372, 401, 416, 1381, 1610, 1611
BcoDI	GTCTC	3 cut(s)	338, 1274, 1485
BfaI	CTAG	6 cut(s)	1014, 1130, 1169, 1400, 1503, 1754
BfoI	RGCGCY	1 cut(s)	429
BfuI	GTATCC	2 cut(s)	281, 1736
BisI	GCNGC	4 cut(s)	39, 42, 819, 2008
BlsI	GCNGC	4 cut(s)	40, 43, 820, 2009
Bme18I	GGWCC	4 cut(s)	89, 961, 1024, 2110
BmeRI	GACNNNNNGTC	1 cut(s)	658
BmeT110I	CYCGRG	4 cut(s)	353, 1210, 1609, 1950
BmgBI	CACGTC	1 cut(s)	1675
BmgT120I	GGNCC	9 cut(s)	89, 379, 744, 961, 1024, 1382, 1444, 1899, 2110
BmiI	GGNNCC	7 cut(s)	91, 644, 1026, 1307, 1615, 1947, 2081
BmrI	ACTGGG	1 cut(s)	944
BmsI	GCATC	3 cut(s)	357, 1311, 1888
BmtI	GCTAGC	2 cut(s)	1172, 1506
BmuI	ACTGGG	1 cut(s)	944
Bpu10I	CCTNAGC	2 cut(s)	128, 1173
BpuEI	CTTGAG	4 cut(s)	764, 1076, 1481, 1817
BpuMI	CCSGG	7 cut(s)	285, 372, 401, 416, 1381, 1610, 1611
BsaAI	YACGTR	1 cut(s)	1831
BsaBI	GATNNNNATC	1 cut(s)	605
BsaHI	GRCGYC	1 cut(s)	2033
BsaI	GGTCTC	1 cut(s)	1485
BsaJI	CCNNGG	9 cut(s)	354, 370, 399, 740, 1566, 1609, 1617, 1724, 2151
BsaWI	WCCGGW	3 cut(s)	526, 827, 2112
BsaXI	ACNNNNNCTCC	4 cut(s)	711, 741, 1361, 1391
Bsc4I	CCNNNNNNNGG	7 cut(s)	376, 377, 487, 589, 1192, 1404, 2089
Bse118I	RCCGGY	3 cut(s)	34, 428, 2112
Bse1I	ACTGG	4 cut(s)	82, 241, 481, 939
Bse3DI	GCAATG	2 cut(s)	1626, 2010
Bse8I	GATNNNNATC	1 cut(s)	605
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	4 cut(s)	618, 1556, 2108, 2153
BseDI	CCNNGG	9 cut(s)	354, 370, 399, 740, 1566, 1609, 1617, 1724, 2151
BseGI	GGATG	6 cut(s)	348, 837, 895, 1326, 1879, 2058
BseJI	GATNNNNATC	1 cut(s)	605
BseLI	CCNNNNNNNGG	7 cut(s)	376, 377, 487, 589, 1192, 1404, 2089
BseMI	GCAATG	2 cut(s)	1626, 2010
BseMII	CTCAG	6 cut(s)	71, 142, 162, 573, 1626, 2064
BseNI	ACTGG	4 cut(s)	82, 241, 481, 939
BsePI	GCGCGC	3 cut(s)	1041, 1559, 1561
BseSI	GKGCMC	2 cut(s)	1616, 1950
BseXI	GCAGC	1 cut(s)	2019
BsgI	GTGCAG	1 cut(s)	1433
Bsh1236I	CGCG	5 cut(s)	611, 821, 1043, 1561, 1563
Bsh1285I	CGRYCG	1 cut(s)	1724
BshNI	GGYRCC	3 cut(s)	1305, 1613, 1945
BshTI	ACCGGT	1 cut(s)	2112
BsiEI	CGRYCG	1 cut(s)	1724
BsiHKAI	GWGCWC	3 cut(s)	157, 1092, 1254
BsiHKCI	CYCGRG	4 cut(s)	353, 1210, 1609, 1950
BslFI	GGGAC	8 cut(s)	75, 353, 566, 920, 1229, 1247, 1592, 1940
BslI	CCNNNNNNNGG	7 cut(s)	376, 377, 487, 589, 1192, 1404, 2089
BsmAI	GTCTC	3 cut(s)	338, 1274, 1485
BsmBI	CGTCTC	2 cut(s)	338, 1274
BsmFI	GGGAC	8 cut(s)	75, 353, 566, 920, 1229, 1247, 1592, 1940
Bso31I	GGTCTC	1 cut(s)	1485
BsoBI	CYCGRG	4 cut(s)	353, 1210, 1609, 1950
Bsp1286I	GDGCHC	6 cut(s)	157, 1092, 1254, 1616, 1950, 2084
Bsp13I	TCCGGA	1 cut(s)	526
Bsp1407I	TGTACA	1 cut(s)	234
Bsp19I	CCATGG	1 cut(s)	1617
BspCNI	CTCAG	6 cut(s)	70, 141, 161, 572, 1627, 2065
BspEI	TCCGGA	1 cut(s)	526
BspFNI	CGCG	5 cut(s)	611, 821, 1043, 1561, 1563
BspLI	GGNNCC	7 cut(s)	91, 644, 1026, 1307, 1615, 1947, 2081
BspOI	GCTAGC	2 cut(s)	1172, 1506
BspPI	GGATC	7 cut(s)	92, 224, 236, 518, 608, 637, 650
BspQI	GCTCTTC	2 cut(s)	162, 2152
BspT107I	GGYRCC	3 cut(s)	1305, 1613, 1945
BspTNI	GGTCTC	1 cut(s)	1485
BsrDI	GCAATG	2 cut(s)	1626, 2010
BsrFI	RCCGGY	3 cut(s)	34, 428, 2112
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	4 cut(s)	82, 241, 481, 939
BssAI	RCCGGY	3 cut(s)	34, 428, 2112
BssECI	CCNNGG	9 cut(s)	354, 370, 399, 740, 1566, 1609, 1617, 1724, 2151
BssHII	GCGCGC	3 cut(s)	1041, 1559, 1561
BssNI	GRCGYC	1 cut(s)	2033
BssT1I	CCWWGG	2 cut(s)	1566, 1617
Bst2UI	CCWGG	4 cut(s)	618, 1556, 2108, 2153
Bst4CI	ACNGT	7 cut(s)	467, 580, 656, 874, 969, 1268, 1725
Bst6I	CTCTTC	3 cut(s)	162, 280, 2152
BstACI	GRCGYC	1 cut(s)	2033
BstAUI	TGTACA	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	1831
BstC8I	GCNNGC	7 cut(s)	36, 1043, 1170, 1504, 1561, 1563, 1869
BstDEI	CTNAG	7 cut(s)	57, 128, 148, 559, 1173, 1635, 2073
BstDSI	CCRYGG	2 cut(s)	1617, 1724
BstF5I	GGATG	6 cut(s)	348, 837, 895, 1326, 1879, 2058
BstFNI	CGCG	5 cut(s)	611, 821, 1043, 1561, 1563
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	7 cut(s)	428, 613, 1043, 1045, 1561, 1563, 1565
BstMAI	GTCTC	3 cut(s)	338, 1274, 1485
BstMCI	CGRYCG	1 cut(s)	1724
BstMWI	GCNNNNNNNGC	7 cut(s)	192, 1169, 1551, 1560, 1864, 1990, 2103
BstNI	CCWGG	4 cut(s)	618, 1556, 2108, 2153
BstNSI	RCATGY	2 cut(s)	1348, 1665
BstSLI	GKGCMC	2 cut(s)	1616, 1950
BstUI	CGCG	5 cut(s)	611, 821, 1043, 1561, 1563
BstV1I	GCAGC	1 cut(s)	2019
BstX2I	RGATCY	3 cut(s)	216, 228, 642
BstXI	CCANNNNNNTGG	2 cut(s)	484, 1316
BstYI	RGATCY	3 cut(s)	216, 228, 642
BsuI	GTATCC	2 cut(s)	281, 1736
BtgI	CCRYGG	2 cut(s)	1617, 1724
BtrI	CACGTC	1 cut(s)	1675
BtsCI	GGATG	6 cut(s)	348, 837, 895, 1326, 1879, 2058
BtsI	GCAGTG	2 cut(s)	1203, 2104
BtsIMutI	CAGTG	3 cut(s)	932, 1203, 2104
Cac8I	GCNNGC	7 cut(s)	36, 1043, 1170, 1504, 1561, 1563, 1869
CfoI	GCGC	7 cut(s)	428, 613, 1043, 1045, 1561, 1563, 1565
Cfr10I	RCCGGY	3 cut(s)	34, 428, 2112
Cfr13I	GGNCC	9 cut(s)	89, 379, 744, 961, 1024, 1382, 1444, 1899, 2110
Cfr9I	CCCGGG	1 cut(s)	1609
CseI	GACGC	3 cut(s)	62, 810, 1008
Csp6I	GTAC	8 cut(s)	235, 1156, 1336, 1342, 1417, 1468, 1624, 1678
CspAI	ACCGGT	1 cut(s)	2112
CspCI	CAANNNNNGTGG	2 cut(s)	1706, 1741
CviAII	CATG	6 cut(s)	196, 541, 682, 1345, 1618, 1662
CviQI	GTAC	8 cut(s)	235, 1156, 1336, 1342, 1417, 1468, 1624, 1678
DdeI	CTNAG	7 cut(s)	57, 128, 148, 559, 1173, 1635, 2073
DrdI	GACNNNNNNGTC	2 cut(s)	205, 365
DriI	GACNNNNNGTC	1 cut(s)	658
DseDI	GACNNNNNNGTC	2 cut(s)	205, 365
EaeI	YGGCCR	2 cut(s)	684, 1245
Eam1104I	CTCTTC	3 cut(s)	162, 280, 2152
Eam1105I	GACNNNNNGTC	1 cut(s)	658
EarI	CTCTTC	3 cut(s)	162, 280, 2152
EciI	GGCGGA	2 cut(s)	166, 352
Ecl136II	GAGCTC	3 cut(s)	155, 1090, 1252
Eco130I	CCWWGG	2 cut(s)	1566, 1617
Eco24I	GRGCYC	4 cut(s)	157, 1092, 1254, 2084
Eco31I	GGTCTC	1 cut(s)	1485
Eco47I	GGWCC	4 cut(s)	89, 961, 1024, 2110
Eco53kI	GAGCTC	3 cut(s)	155, 1090, 1252
Eco57I	CTGAAG	3 cut(s)	143, 175, 2016
Eco88I	CYCGRG	4 cut(s)	353, 1210, 1609, 1950
EcoICRI	GAGCTC	3 cut(s)	155, 1090, 1252
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	4 cut(s)	616, 1554, 2106, 2151
EcoT14I	CCWWGG	2 cut(s)	1566, 1617
EcoT22I	ATGCAT	1 cut(s)	997
EcoT38I	GRGCYC	4 cut(s)	157, 1092, 1254, 2084
ErhI	CCWWGG	2 cut(s)	1566, 1617
Esp3I	CGTCTC	2 cut(s)	338, 1274
FaeI	CATG	6 cut(s)	199, 544, 685, 1348, 1621, 1665
FalI	AAGNNNNNCTT	4 cut(s)	503, 535, 791, 823
FaqI	GGGAC	8 cut(s)	75, 353, 566, 920, 1229, 1247, 1592, 1940
FatI	CATG	6 cut(s)	195, 540, 681, 1344, 1617, 1661
FauI	CCCGC	4 cut(s)	142, 353, 591, 940
Fnu4HI	GCNGC	4 cut(s)	39, 42, 819, 2008
FokI	GGATG	6 cut(s)	335, 824, 902, 1333, 1866, 2065
FriOI	GRGCYC	4 cut(s)	157, 1092, 1254, 2084
Fsp4HI	GCNGC	4 cut(s)	39, 42, 819, 2008
FspBI	CTAG	6 cut(s)	1014, 1130, 1169, 1400, 1503, 1754
GlaI	GCGC	7 cut(s)	427, 612, 1042, 1044, 1560, 1562, 1564
GluI	GCNGC	4 cut(s)	39, 42, 819, 2008
HaeII	RGCGCY	1 cut(s)	429
HgaI	GACGC	3 cut(s)	62, 810, 1008
HhaI	GCGC	7 cut(s)	428, 613, 1043, 1045, 1561, 1563, 1565
Hin1I	GRCGYC	1 cut(s)	2033
Hin1II	CATG	6 cut(s)	199, 544, 685, 1348, 1621, 1665
Hin6I	GCGC	7 cut(s)	426, 611, 1041, 1043, 1559, 1561, 1563
HinP1I	GCGC	7 cut(s)	426, 611, 1041, 1043, 1559, 1561, 1563
HincII	GTYRAC	3 cut(s)	271, 1718, 2026
HindII	GTYRAC	3 cut(s)	271, 1718, 2026
HinfI	GANTC	8 cut(s)	7, 173, 359, 813, 865, 880, 1667, 1953
HpaI	GTTAAC	1 cut(s)	2026
HphI	GGTGA	6 cut(s)	16, 40, 82, 241, 1246, 2150
Hpy166II	GTNNAC	8 cut(s)	271, 825, 1336, 1486, 1678, 1718, 1728, 2026
Hpy188III	TCNNGA	8 cut(s)	150, 256, 527, 604, 1058, 1093, 1210, 2050
Hpy8I	GTNNAC	8 cut(s)	271, 825, 1336, 1486, 1678, 1718, 1728, 2026
Hpy99I	CGWCG	9 cut(s)	56, 296, 467, 656, 1024, 1118, 2035, 2038, 2041
HpyCH4III	ACNGT	7 cut(s)	467, 580, 656, 874, 969, 1268, 1725
HpyCH4IV	ACGT	5 cut(s)	291, 324, 1674, 1830, 2033
HpyCH4V	TGCA	4 cut(s)	995, 1394, 1450, 1777
HpyF10VI	GCNNNNNNNGC	7 cut(s)	192, 1169, 1551, 1560, 1864, 1990, 2103
HpyF3I	CTNAG	7 cut(s)	57, 128, 148, 559, 1173, 1635, 2073
HpySE526I	ACGT	5 cut(s)	291, 324, 1674, 1830, 2033
Hsp92I	GRCGYC	1 cut(s)	2033
Hsp92II	CATG	6 cut(s)	199, 544, 685, 1348, 1621, 1665
HspAI	GCGC	7 cut(s)	426, 611, 1041, 1043, 1559, 1561, 1563
Kpn2I	TCCGGA	1 cut(s)	526
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
KspAI	GTTAAC	1 cut(s)	2026
LguI	GCTCTTC	2 cut(s)	162, 2152
LmnI	GCTCC	5 cut(s)	152, 347, 719, 1356, 2079
Lsp1109I	GCAGC	1 cut(s)	2019
LweI	GCATC	3 cut(s)	357, 1311, 1888
MaeI	CTAG	6 cut(s)	1014, 1130, 1169, 1400, 1503, 1754
MaeII	ACGT	5 cut(s)	291, 324, 1674, 1830, 2033
MaeIII	GTNAC	7 cut(s)	467, 660, 833, 1079, 1293, 1426, 2138
MboII	GAAGA	7 cut(s)	149, 267, 270, 937, 1213, 1850, 2139
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	3 cut(s)	216, 228, 642
MhlI	GDGCHC	6 cut(s)	157, 1092, 1254, 1616, 1950, 2084
MlsI	TGGCCA	1 cut(s)	686
MluCI	AATT	3 cut(s)	492, 756, 1748
MluNI	TGGCCA	1 cut(s)	686
MlyI	GAGTC	4 cut(s)	167, 353, 1676, 1962
MmeI	TCCRAC	2 cut(s)	125, 1002
Mox20I	TGGCCA	1 cut(s)	686
Mph1103I	ATGCAT	1 cut(s)	997
MroI	TCCGGA	1 cut(s)	526
MroNI	GCCGGC	1 cut(s)	34
MroXI	GAANNNNTTC	2 cut(s)	1073, 1205
MscI	TGGCCA	1 cut(s)	686
MseI	TTAA	7 cut(s)	321, 564, 729, 774, 1263, 2025, 2158
MslI	CAYNNNNRTG	2 cut(s)	1314, 1433
Msp20I	TGGCCA	1 cut(s)	686
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	4 cut(s)	618, 1556, 2108, 2153
MvnI	CGCG	5 cut(s)	611, 821, 1043, 1561, 1563
MwoI	GCNNNNNNNGC	7 cut(s)	192, 1169, 1551, 1560, 1864, 1990, 2103
NaeI	GCCGGC	1 cut(s)	36
NciI	CCSGG	7 cut(s)	285, 372, 401, 416, 1381, 1610, 1611
NcoI	CCATGG	1 cut(s)	1617
NgoMIV	GCCGGC	1 cut(s)	34
NheI	GCTAGC	2 cut(s)	1168, 1502
NlaIII	CATG	6 cut(s)	199, 544, 685, 1348, 1621, 1665
NlaIV	GGNNCC	7 cut(s)	91, 644, 1026, 1307, 1615, 1947, 2081
NmeAIII	GCCGAG	3 cut(s)	721, 1273, 1421
NmuCI	GTSAC	3 cut(s)	660, 1426, 2138
NsiI	ATGCAT	1 cut(s)	997
NspI	RCATGY	2 cut(s)	1348, 1665
OliI	CACNNNNGTG	1 cut(s)	1433
PaeR7I	CTCGAG	1 cut(s)	1210
PauI	GCGCGC	3 cut(s)	1041, 1559, 1561
PciI	ACATGT	1 cut(s)	1661
PciSI	GCTCTTC	2 cut(s)	162, 2152
PcsI	WCGNNNNNNNCGW	3 cut(s)	459, 1596, 2036
PdiI	GCCGGC	1 cut(s)	36
PdmI	GAANNNNTTC	2 cut(s)	1073, 1205
PfeI	GAWTC	4 cut(s)	7, 813, 865, 880
PflFI	GACNNNGTC	3 cut(s)	788, 1220, 2035
PflMI	CCANNNNNTGG	1 cut(s)	487
PfoI	TCCNGGA	2 cut(s)	283, 414
PinAI	ACCGGT	1 cut(s)	2112
PkrI	GCNGC	4 cut(s)	40, 43, 820, 2009
PleI	GAGTC	4 cut(s)	167, 353, 1675, 1961
PpsI	GAGTC	4 cut(s)	167, 353, 1675, 1961
Ppu21I	YACGTR	1 cut(s)	1831
PscI	ACATGT	1 cut(s)	1661
Psp124BI	GAGCTC	3 cut(s)	157, 1092, 1254
Psp6I	CCWGG	4 cut(s)	616, 1554, 2106, 2151
PspGI	CCWGG	4 cut(s)	616, 1554, 2106, 2151
PspN4I	GGNNCC	7 cut(s)	91, 644, 1026, 1307, 1615, 1947, 2081
PspPI	GGNCC	9 cut(s)	89, 379, 744, 961, 1024, 1382, 1444, 1899, 2110
PsuI	RGATCY	3 cut(s)	216, 228, 642
PsyI	GACNNNGTC	3 cut(s)	788, 1220, 2035
PteI	GCGCGC	3 cut(s)	1041, 1559, 1561
RsaI	GTAC	8 cut(s)	236, 1157, 1337, 1343, 1418, 1469, 1625, 1679
RsaNI	GTAC	8 cut(s)	235, 1156, 1336, 1342, 1417, 1468, 1624, 1678
RseI	CAYNNNNRTG	2 cut(s)	1314, 1433
SacI	GAGCTC	3 cut(s)	157, 1092, 1254
SapI	GCTCTTC	2 cut(s)	162, 2152
SaqAI	TTAA	7 cut(s)	321, 564, 729, 774, 1263, 2025, 2158
SatI	GCNGC	4 cut(s)	39, 42, 819, 2008
Sau96I	GGNCC	9 cut(s)	89, 379, 744, 961, 1024, 1382, 1444, 1899, 2110
SchI	GAGTC	4 cut(s)	167, 353, 1676, 1962
SduI	GDGCHC	6 cut(s)	157, 1092, 1254, 1616, 1950, 2084
SfaNI	GCATC	3 cut(s)	357, 1311, 1888
Sfr274I	CTCGAG	1 cut(s)	1210
SinI	GGWCC	4 cut(s)	89, 961, 1024, 2110
SlaI	CTCGAG	1 cut(s)	1210
SmaI	CCCGGG	1 cut(s)	1611
SmiMI	CAYNNNNRTG	2 cut(s)	1314, 1433
SmlI	CTYRAG	5 cut(s)	779, 1091, 1210, 1496, 1796
SmoI	CTYRAG	5 cut(s)	779, 1091, 1210, 1496, 1796
Sse9I	AATT	3 cut(s)	492, 756, 1748
SspMI	CTAG	6 cut(s)	1014, 1130, 1169, 1400, 1503, 1754
SstI	GAGCTC	3 cut(s)	157, 1092, 1254
StyI	CCWWGG	2 cut(s)	1566, 1617
TaaI	ACNGT	7 cut(s)	467, 580, 656, 874, 969, 1268, 1725
TaiI	ACGT	5 cut(s)	294, 327, 1677, 1833, 2036
TaqI	TCGA	8 cut(s)	522, 603, 1113, 1188, 1211, 1599, 1806, 2064
TaqII	GACCGA	2 cut(s)	77, 710
TasI	AATT	3 cut(s)	492, 756, 1748
TatI	WGTACW	3 cut(s)	234, 1341, 1467
TauI	GCSGC	3 cut(s)	41, 44, 821
TfiI	GAWTC	4 cut(s)	7, 813, 865, 880
Tru1I	TTAA	7 cut(s)	321, 564, 729, 774, 1263, 2025, 2158
Tru9I	TTAA	7 cut(s)	321, 564, 729, 774, 1263, 2025, 2158
TscAI	CASTG	3 cut(s)	939, 1203, 2104
TseFI	GTSAC	3 cut(s)	660, 1426, 2138
TseI	GCWGC	1 cut(s)	2007
Tsp45I	GTSAC	3 cut(s)	660, 1426, 2138
TspDTI	ATGAA	3 cut(s)	379, 670, 1590
TspGWI	ACGGA	1 cut(s)	722
TspMI	CCCGGG	1 cut(s)	1609
TspRI	CASTG	3 cut(s)	939, 1203, 2104
Tth111I	GACNNNGTC	3 cut(s)	788, 1220, 2035
Van91I	CCANNNNNTGG	1 cut(s)	487
VpaK11BI	GGWCC	4 cut(s)	89, 961, 1024, 2110
XceI	RCATGY	2 cut(s)	1348, 1665
XcmI	CCANNNNNNNNNTGG	5 cut(s)	481, 484, 653, 1928, 1977
XhoI	CTCGAG	1 cut(s)	1210
XmaI	CCCGGG	1 cut(s)	1609
XmnI	GAANNNNTTC	2 cut(s)	1073, 1205
XspI	CTAG	6 cut(s)	1014, 1130, 1169, 1400, 1503, 1754
ZraI	GACGTC	1 cut(s)	2034
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.