Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020987.1

Orthogroup ID

OG0009247

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1359

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020987.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 898 bp

ttcagaatcagacccaaaggttcaaacagtaaattcacctccaccagcagcagcagcacaggcttcagttccatcccaaccaactagttcttcagctccgtctcagccagcagctctgcctattcagggttcagttggagtgccagagttgcccgaaaatcccccagaagatgccgctgctgtgactcagcggaaaggacactgtagcagcagcaacagctcaagcagcaacggtagtacaagcagtagtgtatttgcaagtttatttgcttcttcgacaacatctggagcaagcttgcaacctcctgcatttactgacttaattcgagccatggggcaaccggatcaaccaactgacctagcaccatcttcttcaattgagcctatctctcttggcctctcaaccagtcatgcatcctcaatttttggatctgcaggacaggagcgtaggcagtatgcgcctccaccacaaccagctatgtctgccactgctctacttcagaaagctgctcaaatgggtgcagcagcaactaacgcatcgttgcttcgtgggtttggcattgtctcctcctcatcatcttccacacagcaagatagcatgcaatggaatcagcggcaagcagaatcggacagtgcctcaattgctgcagggcttggacttggtcttccttgtgacggttctggatggaaggaattaatgatgggaagtccttcaatgtttggtcccaagcaaaccacacttgatcttttgggattgggaatggctgccggtaataaccccaatggtggcctgtcagccctaattacatccatcgggggtggtatagatgtggctgctgcagctgcatcatttggaagtggagaatacagtggcaaagatttggcaaggagctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009937 GO:0009966 GO:0010029 GO:0010154 GO:0010431 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023051 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048580 GO:0048583 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

298

Amino Acids

29.58

Weight (kDa)

4.72

Isoelectric Point (pI)

61.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50700 AT5G66730
fragaria_vesca	FvH4_1g13710 FvH4_1g13710
malus_domestica	MD02G1151700.v1.1 MD15G1266200.v1.1
prunus_persica	Prupe.7G151500_v2.0.a1
pyrus_communis	pycom02g11890 pycom15g23170
rosa_chinensis	RchiOBHm_Chr2g0102031
rosa_laevigata	RLG00000017128
rosa_multiflora	Rmu_co7992216.1_g000001 Rmu_co8011972.1_g000001 Rmu_sc0020987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140800
rosa_rugosa	Rorug02G0104200.1 Rorug02G0104300
rosa_samantha	Rh2AG152300 Rh2BG157700 Rh2CG157600 Rh2DG157800
rosa_wichuraiana	Rw2G011890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	175, 191, 614
AclWI	GGATC	2 cut(s)	352, 437
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	3 cut(s)	49, 76, 483
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	3 cut(s)	126, 675, 786
AgsI	TTSAA	3 cut(s)	24, 376, 715
AhlI	ACTAGT	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	8 cut(s)	96, 114, 220, 295, 477, 507, 843, 892
AluI	AGCT	8 cut(s)	96, 114, 220, 295, 477, 507, 843, 892
Alw21I	GWGCWC	1 cut(s)	894
Alw26I	GTCTC	2 cut(s)	106, 569
AlwI	GGATC	2 cut(s)	352, 437
AoxI	GGCC	2 cut(s)	395, 788
ApoI	RAATTY	1 cut(s)	32
AseI	ATTAAT	1 cut(s)	696
Asp700I	GAANNNNTTC	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	1 cut(s)	723
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	723
BanII	GRGCYC	1 cut(s)	894
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	894
BccI	CCATC	5 cut(s)	80, 374, 679, 695, 819
BcoDI	GTCTC	2 cut(s)	106, 569
BcuI	ACTAGT	1 cut(s)	84
BfaI	CTAG	2 cut(s)	85, 360
BfmI	CTRYAG	4 cut(s)	203, 433, 646, 838
Bme18I	GGWCC	1 cut(s)	723
BmgT120I	GGNCC	1 cut(s)	723
BmiI	GGNNCC	1 cut(s)	725
BmsI	GCATC	4 cut(s)	161, 423, 546, 855
BpiI	GAAGAC	1 cut(s)	657
BplI	GAGNNNNNCTC	2 cut(s)	372, 404
BpmI	CTGGAG	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 675, 786
Bse118I	RCCGGY	1 cut(s)	768
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	4 cut(s)	72, 414, 690, 807
BseLI	CCNNNNNNNGG	3 cut(s)	126, 675, 786
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	2 cut(s)	117, 201
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	2 cut(s)	557, 560
BsgI	GTGCAG	1 cut(s)	541
BshFI	GGCC	2 cut(s)	397, 790
BsiHKAI	GWGCWC	1 cut(s)	894
BsiSI	CCGG	2 cut(s)	342, 769
BslFI	GGGAC	1 cut(s)	709
BslI	CCNNNNNNNGG	3 cut(s)	126, 675, 786
BsmAI	GTCTC	2 cut(s)	106, 569
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	397, 790
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp143I	GATC	3 cut(s)	344, 429, 743
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	3 cut(s)	175, 191, 614
BspANI	GGCC	2 cut(s)	397, 790
BspCNI	CTCAG	2 cut(s)	116, 200
BspHI	TCATGA	1 cut(s)	894
BspLI	GGNNCC	1 cut(s)	725
BspMAI	CTGCAG	3 cut(s)	437, 650, 842
BspPI	GGATC	2 cut(s)	352, 437
BsrDI	GCAATG	1 cut(s)	609
BsrFI	RCCGGY	1 cut(s)	768
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	768
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	344, 429, 743
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	6 cut(s)	29, 204, 234, 633, 678, 870
BstC8I	GCNNGC	5 cut(s)	109, 293, 297, 600, 619
BstDEI	CTNAG	2 cut(s)	103, 187
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	4 cut(s)	72, 414, 690, 807
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	3 cut(s)	347, 432, 746
BstMAI	GTCTC	2 cut(s)	106, 569
BstMBI	GATC	3 cut(s)	344, 429, 743
BstNSI	RCATGY	1 cut(s)	602
BstSFI	CTRYAG	4 cut(s)	203, 433, 646, 838
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	397, 790
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	4 cut(s)	72, 414, 690, 807
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	4 cut(s)	200, 487, 638, 875
Cac8I	GCNNGC	5 cut(s)	109, 293, 297, 600, 619
CciI	TCATGA	1 cut(s)	894
CfoI	GCGC	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	768
Cfr13I	GGNCC	1 cut(s)	723
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	4 cut(s)	332, 411, 599, 895
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	103, 187
DpnI	GATC	3 cut(s)	346, 431, 745
DpnII	GATC	3 cut(s)	344, 429, 743
Ecl136II	GAGCTC	1 cut(s)	892
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	894
Eco47I	GGWCC	1 cut(s)	723
Eco53kI	GAGCTC	1 cut(s)	892
Eco57I	CTGAAG	3 cut(s)	49, 76, 483
EcoICRI	GAGCTC	1 cut(s)	892
EcoT14I	CCWWGG	1 cut(s)	331
EcoT22I	ATGCAT	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	894
ErhI	CCWWGG	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	4 cut(s)	335, 414, 602, 898
FaiI	YATR	7 cut(s)	333, 412, 457, 480, 600, 825, 896
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	4 cut(s)	331, 410, 598, 894
FokI	GGATG	4 cut(s)	59, 401, 697, 794
FriOI	GRGCYC	1 cut(s)	894
FspBI	CTAG	2 cut(s)	85, 360
GlaI	GCGC	1 cut(s)	460
GsuI	CTGGAG	1 cut(s)	307
HaeIII	GGCC	2 cut(s)	397, 790
HapII	CCGG	2 cut(s)	342, 769
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	4 cut(s)	335, 414, 602, 898
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	4 cut(s)	6, 185, 608, 624
HpaII	CCGG	2 cut(s)	342, 769
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	5, 11, 502, 629
Hpy188III	TCNNGA	3 cut(s)	286, 682, 895
HpyAV	CCTTC	2 cut(s)	683, 721
HpyCH4III	ACNGT	6 cut(s)	29, 204, 234, 633, 678, 870
HpyF3I	CTNAG	2 cut(s)	103, 187
Hsp92II	CATG	4 cut(s)	335, 414, 602, 898
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	344, 429, 743
LmnI	GCTCC	4 cut(s)	101, 288, 443, 889
LweI	GCATC	4 cut(s)	161, 423, 546, 855
MaeI	CTAG	2 cut(s)	85, 360
MaeIII	GTNAC	2 cut(s)	182, 672
MalI	GATC	3 cut(s)	346, 431, 745
MboI	GATC	3 cut(s)	344, 429, 743
MboII	GAAGA	7 cut(s)	82, 180, 265, 361, 364, 571, 657
MfeI	CAATTG	2 cut(s)	376, 640
MflI	RGATCY	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	894
MluCI	AATT	7 cut(s)	32, 322, 376, 421, 640, 693, 802
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	8 cut(s)	49, 313, 408, 428, 472, 578, 581, 647
Mph1103I	ATGCAT	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	2 cut(s)	321, 696
MspA1I	CMGCKG	4 cut(s)	177, 191, 614, 843
MspI	CCGG	2 cut(s)	342, 769
MunI	CAATTG	2 cut(s)	376, 640
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	3 cut(s)	344, 429, 743
NlaIII	CATG	4 cut(s)	335, 414, 602, 898
NlaIV	GGNNCC	1 cut(s)	725
NmuCI	GTSAC	2 cut(s)	182, 672
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	602
PagI	TCATGA	1 cut(s)	894
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	3 cut(s)	6, 608, 624
PflFI	GACNNNGTC	1 cut(s)	661
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PshBI	ATTAAT	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	894
PspN4I	GGNNCC	1 cut(s)	725
PspPI	GGNCC	1 cut(s)	723
PstI	CTGCAG	3 cut(s)	437, 650, 842
PsuI	RGATCY	1 cut(s)	429
PsyI	GACNNNGTC	1 cut(s)	661
PvuII	CAGCTG	1 cut(s)	843
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	894
SaqAI	TTAA	2 cut(s)	321, 696
Sau3AI	GATC	3 cut(s)	344, 429, 743
Sau96I	GGNCC	1 cut(s)	723
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	4 cut(s)	161, 423, 546, 855
SfcI	CTRYAG	4 cut(s)	203, 433, 646, 838
SinI	GGWCC	1 cut(s)	723
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	84
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	7 cut(s)	32, 322, 376, 421, 640, 693, 802
SsiI	CCGC	3 cut(s)	175, 191, 614
SspMI	CTAG	2 cut(s)	85, 360
SstI	GAGCTC	1 cut(s)	894
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	6 cut(s)	29, 204, 234, 633, 678, 870
TaqI	TCGA	2 cut(s)	276, 326
TasI	AATT	7 cut(s)	32, 322, 376, 421, 640, 693, 802
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	177, 617
TfiI	GAWTC	3 cut(s)	6, 608, 624
Tru1I	TTAA	2 cut(s)	321, 696
Tru9I	TTAA	2 cut(s)	321, 696
TscAI	CASTG	4 cut(s)	207, 494, 638, 875
TseFI	GTSAC	2 cut(s)	182, 672
Tsp45I	GTSAC	2 cut(s)	182, 672
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	4 cut(s)	207, 494, 638, 875
Tth111I	GACNNNGTC	1 cut(s)	661
VpaK11BI	GGWCC	1 cut(s)	723
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	2 cut(s)	85, 360
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.