Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8011972.1

Orthogroup ID

OG0009247

Physical Location & Seq

Genomic Coordinates Forward (+)

22 .. 321

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8011972.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgcaatggaatcagcggcaagcagaatcggacagtgcctcaattgctgcagggcttggacttggtcttccttgtgacggttctggatggaaggaattaatgatgggaagtccttcaatgtttggtcccaagcaaaccacacttgatcttttgggattgggaatggctgccggtaataaccccaatggtggcctgtcagccctaattacatccatcgggggtggtatagatgtggctgctgcagctgcatcatttggaagtggagaatacagtggcaaagatttggcaaggagctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009937 GO:0009966 GO:0010029 GO:0010154 GO:0010431 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023051 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048580 GO:0048583 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

99

Amino Acids

9.81

Weight (kDa)

4.46

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50700 AT5G66730
fragaria_vesca	FvH4_1g13710 FvH4_1g13710
malus_domestica	MD02G1151700.v1.1 MD15G1266200.v1.1
prunus_persica	Prupe.7G151500_v2.0.a1
pyrus_communis	pycom02g11890 pycom15g23170
rosa_chinensis	RchiOBHm_Chr2g0102031
rosa_laevigata	RLG00000017128
rosa_multiflora	Rmu_co7992216.1_g000001 Rmu_co8011972.1_g000001 Rmu_sc0020987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140800
rosa_rugosa	Rorug02G0104200.1 Rorug02G0104300
rosa_samantha	Rh2AG152300 Rh2BG157700 Rh2CG157600 Rh2DG157800
rosa_wichuraiana	Rw2G011890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	77, 188
AgsI	TTSAA	1 cut(s)	117
AluBI	AGCT	2 cut(s)	245, 294
AluI	AGCT	2 cut(s)	245, 294
Alw21I	GWGCWC	1 cut(s)	296
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	6 cut(s)	47, 167, 236, 239, 242, 245
AseI	ATTAAT	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	6 cut(s)	34, 154, 223, 226, 232, 254
BccI	CCATC	3 cut(s)	81, 97, 221
BfmI	CTRYAG	2 cut(s)	48, 240
BisI	GCNGC	7 cut(s)	17, 48, 168, 237, 240, 243, 246
BlsI	GCNGC	7 cut(s)	18, 49, 169, 238, 241, 244, 247
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 188
Bse118I	RCCGGY	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	92, 209
BseLI	CCNNNNNNNGG	2 cut(s)	77, 188
BseMI	GCAATG	1 cut(s)	11
BseXI	GCAGC	6 cut(s)	34, 154, 223, 226, 232, 254
BshFI	GGCC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	77, 188
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	2 cut(s)	52, 244
BsrDI	GCAATG	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssMI	GATC	1 cut(s)	145
Bst4CI	ACNGT	3 cut(s)	35, 80, 272
BstC8I	GCNNGC	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	92, 209
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 242, 245
BstSFI	CTRYAG	2 cut(s)	48, 240
BstV1I	GCAGC	6 cut(s)	34, 154, 223, 226, 232, 254
BstV2I	GAAGAC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	92, 209
BtsIMutI	CAGTG	2 cut(s)	40, 277
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	125
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	7 cut(s)	55, 167, 192, 200, 236, 245, 294
CviKI_1	RGCY	7 cut(s)	55, 167, 192, 200, 236, 245, 294
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	1 cut(s)	300
FaiI	YATR	2 cut(s)	227, 298
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	1 cut(s)	296
Fnu4HI	GCNGC	7 cut(s)	17, 48, 168, 237, 240, 243, 246
FokI	GGATG	2 cut(s)	99, 196
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	7 cut(s)	17, 48, 168, 237, 240, 243, 246
GluI	GCNGC	7 cut(s)	17, 48, 168, 237, 240, 243, 246
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	1 cut(s)	300
HinfI	GANTC	2 cut(s)	10, 26
HpaII	CCGG	1 cut(s)	171
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	84, 297
HpyAV	CCTTC	2 cut(s)	85, 123
HpyCH4III	ACNGT	3 cut(s)	35, 80, 272
HpyCH4V	TGCA	4 cut(s)	4, 50, 242, 248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 242, 245
Hsp92II	CATG	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	4 cut(s)	36, 69, 184, 206
Lsp1109I	GCAGC	6 cut(s)	34, 154, 223, 226, 232, 254
LweI	GCATC	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	59
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	3 cut(s)	42, 95, 204
MnlI	CCTC	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	112
MseI	TTAA	1 cut(s)	98
MspA1I	CMGCKG	2 cut(s)	16, 245
MspI	CCGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	44, 242, 245
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	74
PagI	TCATGA	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	10, 26
PflFI	GACNNNGTC	1 cut(s)	63
PkrI	GCNGC	7 cut(s)	18, 49, 169, 238, 241, 244, 247
PshBI	ATTAAT	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	2 cut(s)	52, 244
PsyI	GACNNNGTC	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	7 cut(s)	17, 48, 168, 237, 240, 243, 246
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	2 cut(s)	247, 296
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	2 cut(s)	48, 240
SinI	GGWCC	1 cut(s)	125
Sse9I	AATT	3 cut(s)	42, 95, 204
SsiI	CCGC	1 cut(s)	16
SstI	GAGCTC	1 cut(s)	296
TaaI	ACNGT	3 cut(s)	35, 80, 272
TasI	AATT	3 cut(s)	42, 95, 204
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	2 cut(s)	10, 26
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	2 cut(s)	40, 277
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	6 cut(s)	47, 167, 236, 239, 242, 245
Tsp45I	GTSAC	1 cut(s)	74
TspRI	CASTG	2 cut(s)	40, 277
Tth111I	GACNNNGTC	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.