pycom15g23170

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
17245507 .. 17247800
2294 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23170.4

Sequence Viewer

Length: 1515 bp
ATGCCGACCGACCTGGATAATTCCCCTACAGCTTCAGGTGAAGCTAGCGTTTCCTCCTCCGGCAACCAAACCGCTCCGCCCAAACCCGCCACCAAGAAAAAAAGAAACTTGCCAGGAATGCCAGATCCAGATGCAGAAGTGATTGCTCTGTCGCCGAAGACCCTTTTGGCGACGAACCGATTCGTCTGCGAAATTTGCAGCAAAGGGTTTCAGAGGGATCAGAATCTGCAGCTTCATCGGCGGGGCCATAATCTGCCGTGGAAGCTGCGGCAGAGGTCGAGCAAAGAGGTGAAGAAGCGAGTCTACGTCTGCCCGGAGGCCTCCTGTGTGCACCACGATCCGTCTAGAGCTTTGGGTGATCTTACTGGAATTAAAAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGCGATAAGTGCTCAAAGAAGAGGGATAGCTTCATCACTCACAGGGCTTTTTGTGATGCTTTGGCTGAGGAGAGCGCAAGAGCCCCCACCACCACCAGTGCTACCGCCGCCGCCGCCGCTGCCGCCGCCGCCGCTGCCGCCGCAGCAGTGAATTTGAATTCAGAGTCGGACCCAAGAGCTCAATCTGTTATTTCACCTCCACAACCACTGCCATCACCGCCTCTGCCGGCCGCAGCTCCACCCCAGCCTACAACTTCATCAGTTCCATCCCAGTCAGCTGGTGTGTTATCTTCATCCCCGCCTACACAAAGTCCAGTGAGAGAGTTGCCAGAAAATCCCACTCAATTTGTAGAAGCAGTGCCGGCTGTGGCGGGTAGAAAGGGGAATTGTAGCAGCAGCAGCAGCAGCAACAGCTCAAGCAGCAATGGCAGTACAAGCAGTGGTGTGTTTGCAAGTTTATTTGCGTCCTCAACAACATCGGCGAGCTTGCAACCTCCTCAACAGCCTGCATTTACTGACTTAATTCGAGCCATGGGGCATCCAGATCAATCAACCAACCTAGCTCCATCTTCTTCAATGGAGCCCATTTCTCTTGGCCTCTCAACCAGCCATGGATCGTCAATTTTTGAGTCTGCAGGGCAGGAGCGTAGGCAGTATGCGCCCCCACCACAACCAACTATGTCTGCGACAGCACTGCTTCAGAAGGCTGCTCAAATGGGCGCAGCAGCAACCAATGCATCGTTGCTTCGTGGGTTTGGCATTATGTCATCCTCAACGTCTTCCACGCAACAAGAGAGTATGCAATGGAATCAAAGGCCGGCAGAACCAGATAATGTCTCAGTTGCTGCAGGGCTTGGACTTGGTCTTCCTTGTGATGGAGGTTCGGGATGGAAGGAACTAATGATGGGAAGTCCTCCAATGTTCGGTCCAAAGCAAACCACACTCGATCTTTTGGGATTGGGAATGGCCGCCGGTAATAACCCCAGTAGTGGCCTATCAGCCCTAATCACATCAATTGGTGGCGGTCTAGATGTAGCTGCTGCAGCTGCATCCTATGGAGGTGGAGAATATAGCGGTAAGGACTTGGCAAGAAGCTCATGA

Protein Analysis

505

Amino Acids

52.01

Weight (kDa)

9.04

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 303
AclWI GGATC 4 cut(s) 119, 225, 332, 1036
AcoI YGGCCR 2 cut(s) 642, 1380
AcsI RAATTY 3 cut(s) 192, 565, 571
AcuI CTGAAG 2 cut(s) 18, 1097
AfaI GTAC 1 cut(s) 847
AfiI CCNNNNNNNGG 3 cut(s) 1289, 1337, 1403
AgsI TTSAA 2 cut(s) 571, 990
AjnI CCWGG 2 cut(s) 12, 112
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
Alw21I GWGCWC 3 cut(s) 333, 428, 595
Alw26I GTCTC 1 cut(s) 1255
Alw44I GTGCAC 1 cut(s) 329
AlwI GGATC 4 cut(s) 119, 225, 332, 1036
AlwNI CAGNNNCTG 2 cut(s) 226, 1259
AoxI GGCC 7 cut(s) 244, 318, 642, 1009, 1229, 1380, 1405
ApaLI GTGCAC 1 cut(s) 329
ApoI RAATTY 3 cut(s) 192, 565, 571
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 3 cut(s) 491, 1075, 1136
AspS9I GGNCC 3 cut(s) 244, 583, 1340
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 6 cut(s) 50, 301, 368, 410, 600, 621
AsuNHI GCTAGC 1 cut(s) 44
AvaII GGWCC 2 cut(s) 583, 1340
BaeGI GKGCMC 1 cut(s) 333
BanII GRGCYC 3 cut(s) 499, 595, 999
BarI GAAGNNNNNNTAC 2 cut(s) 287, 319
BbsI GAAGAC 3 cut(s) 164, 1185, 1271
Bbv12I GWGCWC 3 cut(s) 333, 428, 595
BbvCI CCTCAGC 1 cut(s) 480
BccI CCATC 6 cut(s) 634, 688, 988, 1283, 1296, 1312
BceAI ACGGC 1 cut(s) 241
BcgI CGANNNNNNTGC 6 cut(s) 168, 202, 218, 252, 1090, 1124
BciT130I CCWGG 2 cut(s) 14, 114
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 1255
BfaI CTAG 4 cut(s) 45, 345, 974, 1442
BfmI CTRYAG 5 cut(s) 27, 227, 1047, 1260, 1455
Bme1390I CCNGG 3 cut(s) 14, 114, 314
Bme18I GGWCC 2 cut(s) 583, 1340
BmgT120I GGNCC 3 cut(s) 244, 583, 1340
BmiI GGNNCC 3 cut(s) 245, 585, 996
BmrFI CCNGG 3 cut(s) 14, 114, 314
BmrI ACTGGG 2 cut(s) 679, 1392
BmsI GCATC 5 cut(s) 121, 460, 961, 1160, 1472
BmtI GCTAGC 1 cut(s) 48
BmuI ACTGGG 2 cut(s) 679, 1392
BpiI GAAGAC 3 cut(s) 164, 1185, 1271
Bpu10I CCTNAGC 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 814
BpuMI CCSGG 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 222
BsaJI CCNNGG 3 cut(s) 257, 945, 1024
Bsc4I CCNNNNNNNGG 3 cut(s) 1289, 1337, 1403
Bse118I RCCGGY 4 cut(s) 640, 775, 1231, 1385
Bse1I ACTGG 5 cut(s) 370, 510, 685, 728, 1398
Bse3DI GCAATG 2 cut(s) 844, 1223
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 2 cut(s) 14, 114
BseDI CCNNGG 3 cut(s) 257, 945, 1024
BseGI GGATG 6 cut(s) 680, 707, 952, 1181, 1307, 1463
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 3 cut(s) 1289, 1337, 1403
BseMI GCAATG 2 cut(s) 844, 1223
BseMII CTCAG 2 cut(s) 471, 1266
BseNI ACTGG 5 cut(s) 370, 510, 685, 728, 1398
BseRI GAGGAG 3 cut(s) 46, 497, 900
BseSI GKGCMC 1 cut(s) 333
BseX3I CGGCCG 1 cut(s) 642
BseYI CCCAGC 1 cut(s) 657
Bsh1285I CGRYCG 2 cut(s) 9, 645
BshFI GGCC 7 cut(s) 246, 320, 644, 1011, 1231, 1382, 1407
BsiEI CGRYCG 2 cut(s) 9, 645
BsiHKAI GWGCWC 3 cut(s) 333, 428, 595
BsiSI CCGG 6 cut(s) 60, 314, 641, 776, 1232, 1386
BslI CCNNNNNNNGG 3 cut(s) 1289, 1337, 1403
BsmAI GTCTC 1 cut(s) 1255
BsmI GAATGC 1 cut(s) 123
BsnI GGCC 7 cut(s) 246, 320, 644, 1011, 1231, 1382, 1407
Bsp1286I GDGCHC 5 cut(s) 333, 428, 499, 595, 999
Bsp143I GATC 7 cut(s) 124, 217, 337, 358, 958, 1028, 1360
Bsp19I CCATGG 2 cut(s) 945, 1024
BspANI GGCC 7 cut(s) 246, 320, 644, 1011, 1231, 1382, 1407
BspCNI CTCAG 2 cut(s) 472, 1265
BspHI TCATGA 1 cut(s) 1511
BspLI GGNNCC 3 cut(s) 245, 585, 996
BspMAI CTGCAG 4 cut(s) 231, 1051, 1264, 1459
BspOI GCTAGC 1 cut(s) 48
BspPI GGATC 4 cut(s) 119, 225, 332, 1036
BsrBI CCGCTC 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 844, 1223
BsrFI RCCGGY 4 cut(s) 640, 775, 1231, 1385
BsrI ACTGG 5 cut(s) 370, 510, 685, 728, 1398
BssAI RCCGGY 4 cut(s) 640, 775, 1231, 1385
BssECI CCNNGG 3 cut(s) 257, 945, 1024
BssMI GATC 7 cut(s) 124, 217, 337, 358, 958, 1028, 1360
BssT1I CCWWGG 2 cut(s) 945, 1024
Bst2UI CCWGG 2 cut(s) 14, 114
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 1148
BstC8I GCNNGC 7 cut(s) 46, 642, 777, 898, 902, 921, 1233
BstDEI CTNAG 2 cut(s) 480, 1252
BstDSI CCRYGG 3 cut(s) 257, 945, 1024
BstF5I GGATG 6 cut(s) 680, 707, 952, 1181, 1307, 1463
BstHHI GCGC 3 cut(s) 491, 1075, 1136
BstKTI GATC 7 cut(s) 127, 220, 340, 361, 961, 1031, 1363
BstMAI GTCTC 1 cut(s) 1255
BstMBI GATC 7 cut(s) 124, 217, 337, 358, 958, 1028, 1360
BstMCI CGRYCG 2 cut(s) 9, 645
BstNI CCWGG 2 cut(s) 14, 114
BstSCI CCNGG 3 cut(s) 12, 112, 312
BstSFI CTRYAG 5 cut(s) 27, 227, 1047, 1260, 1455
BstSLI GKGCMC 1 cut(s) 333
BstV2I GAAGAC 3 cut(s) 164, 1185, 1271
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 692
BstYI RGATCY 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 642
BsuRI GGCC 7 cut(s) 246, 320, 644, 1011, 1231, 1382, 1407
BtgI CCRYGG 3 cut(s) 257, 945, 1024
BtsCI GGATG 6 cut(s) 680, 707, 952, 1181, 1307, 1463
BtsI GCAGTG 5 cut(s) 567, 620, 777, 859, 1106
BtsIMutI CAGTG 7 cut(s) 517, 567, 620, 735, 777, 859, 1106
Cac8I GCNNGC 7 cut(s) 46, 642, 777, 898, 902, 921, 1233
CaiI CAGNNNCTG 2 cut(s) 226, 1259
CciI TCATGA 1 cut(s) 1511
CfoI GCGC 3 cut(s) 491, 1075, 1136
Cfr10I RCCGGY 4 cut(s) 640, 775, 1231, 1385
Cfr13I GGNCC 3 cut(s) 244, 583, 1340
CseI GACGC 1 cut(s) 867
Csp6I GTAC 1 cut(s) 846
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviAII CATG 3 cut(s) 946, 1025, 1512
CviQI GTAC 1 cut(s) 846
DdeI CTNAG 2 cut(s) 480, 1252
DpnI GATC 7 cut(s) 126, 219, 339, 360, 960, 1030, 1362
DpnII GATC 7 cut(s) 124, 217, 337, 358, 958, 1028, 1360
EaeI YGGCCR 2 cut(s) 642, 1380
EagI CGGCCG 1 cut(s) 642
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
EciI GGCGGA 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 593
EclXI CGGCCG 1 cut(s) 642
Eco130I CCWWGG 2 cut(s) 945, 1024
Eco147I AGGCCT 1 cut(s) 320
Eco24I GRGCYC 3 cut(s) 499, 595, 999
Eco47I GGWCC 2 cut(s) 583, 1340
Eco52I CGGCCG 1 cut(s) 642
Eco53kI GAGCTC 1 cut(s) 593
Eco57I CTGAAG 2 cut(s) 18, 1097
EcoICRI GAGCTC 1 cut(s) 593
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 2 cut(s) 12, 112
EcoT14I CCWWGG 2 cut(s) 945, 1024
EcoT22I ATGCAT 1 cut(s) 1153
EcoT38I GRGCYC 3 cut(s) 499, 595, 999
ErhI CCWWGG 2 cut(s) 945, 1024
FaeI CATG 3 cut(s) 949, 1028, 1515
FatI CATG 3 cut(s) 945, 1024, 1511
FauI CCCGC 4 cut(s) 94, 234, 720, 778
FblI GTMKAC 1 cut(s) 303
FokI GGATG 6 cut(s) 667, 694, 939, 1168, 1314, 1450
FriOI GRGCYC 3 cut(s) 499, 595, 999
FspBI CTAG 4 cut(s) 45, 345, 974, 1442
GlaI GCGC 3 cut(s) 490, 1074, 1135
GsaI CCCAGC 1 cut(s) 661
HaeIII GGCC 7 cut(s) 246, 320, 644, 1011, 1231, 1382, 1407
HapII CCGG 6 cut(s) 60, 314, 641, 776, 1232, 1386
HgaI GACGC 1 cut(s) 867
HhaI GCGC 3 cut(s) 491, 1075, 1136
Hin1II CATG 3 cut(s) 949, 1028, 1515
Hin6I GCGC 3 cut(s) 489, 1073, 1134
HinP1I GCGC 3 cut(s) 489, 1073, 1134
HinfI GANTC 6 cut(s) 180, 223, 300, 578, 1043, 1222
HpaII CCGG 6 cut(s) 60, 314, 641, 776, 1232, 1386
HphI GGTGA 6 cut(s) 50, 301, 368, 410, 600, 621
Hpy166II GTNNAC 2 cut(s) 304, 331
Hpy188I TCNGA 5 cut(s) 213, 222, 577, 583, 1116
Hpy188III TCNNGA 6 cut(s) 128, 345, 956, 1299, 1442, 1512
Hpy8I GTNNAC 2 cut(s) 304, 331
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 1111, 1300
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 2 cut(s) 306, 1190
HpyF3I CTNAG 2 cut(s) 480, 1252
HpySE526I ACGT 2 cut(s) 306, 1190
Hsp92II CATG 3 cut(s) 949, 1028, 1515
HspAI GCGC 3 cut(s) 489, 1073, 1134
KroI GCCGGC 3 cut(s) 640, 775, 1231
KroNI GCCGGC 3 cut(s) 642, 777, 1233
Kzo9I GATC 7 cut(s) 124, 217, 337, 358, 958, 1028, 1360
LmnI GCTCC 5 cut(s) 79, 655, 982, 994, 1057
LweI GCATC 5 cut(s) 121, 460, 961, 1160, 1472
MaeI CTAG 4 cut(s) 45, 345, 974, 1442
MaeII ACGT 2 cut(s) 306, 1190
MalI GATC 7 cut(s) 126, 219, 339, 360, 960, 1030, 1362
MbiI CCGCTC 1 cut(s) 74
MboI GATC 7 cut(s) 124, 217, 337, 358, 958, 1028, 1360
MboII GAAGA 9 cut(s) 169, 304, 415, 445, 696, 975, 978, 1185, 1271
MfeI CAATTG 1 cut(s) 1428
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 5 cut(s) 333, 428, 499, 595, 999
MlyI GAGTC 3 cut(s) 309, 587, 1052
MmeI TCCRAC 1 cut(s) 561
Mph1103I ATGCAT 1 cut(s) 1153
MroNI GCCGGC 3 cut(s) 640, 775, 1231
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 2 cut(s) 372, 935
MspA1I CMGCKG 4 cut(s) 533, 548, 692, 1460
MspI CCGG 6 cut(s) 60, 314, 641, 776, 1232, 1386
MspR9I CCNGG 3 cut(s) 14, 114, 314
MunI CAATTG 1 cut(s) 1428
Mva1269I GAATGC 1 cut(s) 123
MvaI CCWGG 2 cut(s) 14, 114
NaeI GCCGGC 3 cut(s) 642, 777, 1233
NciI CCSGG 1 cut(s) 314
NcoI CCATGG 2 cut(s) 945, 1024
NdeII GATC 7 cut(s) 124, 217, 337, 358, 958, 1028, 1360
NgoMIV GCCGGC 3 cut(s) 640, 775, 1231
NheI GCTAGC 1 cut(s) 44
NlaIII CATG 3 cut(s) 949, 1028, 1515
NlaIV GGNNCC 3 cut(s) 245, 585, 996
NsiI ATGCAT 1 cut(s) 1153
PagI TCATGA 1 cut(s) 1511
PceI AGGCCT 1 cut(s) 320
PctI GAATGC 1 cut(s) 123
PdiI GCCGGC 3 cut(s) 642, 777, 1233
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 180, 223, 1222
PflFI GACNNNGTC 1 cut(s) 1275
PleI GAGTC 3 cut(s) 308, 586, 1051
PpsI GAGTC 3 cut(s) 308, 586, 1051
Psp124BI GAGCTC 1 cut(s) 595
Psp6I CCWGG 2 cut(s) 12, 112
PspFI CCCAGC 1 cut(s) 657
PspGI CCWGG 2 cut(s) 12, 112
PspN4I GGNNCC 3 cut(s) 245, 585, 996
PspPI GGNCC 3 cut(s) 244, 583, 1340
PstI CTGCAG 4 cut(s) 231, 1051, 1264, 1459
PstNI CAGNNNCTG 2 cut(s) 226, 1259
PsuI RGATCY 1 cut(s) 124
PsyI GACNNNGTC 1 cut(s) 1275
PvuII CAGCTG 2 cut(s) 692, 1460
RsaI GTAC 1 cut(s) 847
RsaNI GTAC 1 cut(s) 846
SacI GAGCTC 1 cut(s) 595
SaqAI TTAA 2 cut(s) 372, 935
Sau3AI GATC 7 cut(s) 124, 217, 337, 358, 958, 1028, 1360
Sau96I GGNCC 3 cut(s) 244, 583, 1340
SchI GAGTC 3 cut(s) 309, 587, 1052
ScrFI CCNGG 3 cut(s) 14, 114, 314
SduI GDGCHC 5 cut(s) 333, 428, 499, 595, 999
SfaNI GCATC 5 cut(s) 121, 460, 961, 1160, 1472
SfcI CTRYAG 5 cut(s) 27, 227, 1047, 1260, 1455
SinI GGWCC 2 cut(s) 583, 1340
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
SseBI AGGCCT 1 cut(s) 320
SspMI CTAG 4 cut(s) 45, 345, 974, 1442
SstI GAGCTC 1 cut(s) 595
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 3 cut(s) 12, 112, 312
StyI CCWWGG 2 cut(s) 945, 1024
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 2 cut(s) 309, 1193
TaqI TCGA 3 cut(s) 278, 940, 1359
TaqII GACCGA 2 cut(s) 23, 1328
TatI WGTACW 1 cut(s) 845
TfiI GAWTC 3 cut(s) 180, 223, 1222
Tru1I TTAA 2 cut(s) 372, 935
Tru9I TTAA 2 cut(s) 372, 935
TscAI CASTG 7 cut(s) 517, 567, 627, 735, 777, 859, 1113
TspDTI ATGAA 4 cut(s) 224, 436, 660, 696
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 7 cut(s) 517, 567, 627, 735, 777, 859, 1113
Tth111I GACNNNGTC 1 cut(s) 1275
VneI GTGCAC 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 583, 1340
XapI RAATTY 3 cut(s) 192, 565, 571
XbaI TCTAGA 2 cut(s) 344, 1441
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 4 cut(s) 45, 345, 974, 1442
Zsp2I ATGCAT 1 cut(s) 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.