Rw2G011890

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
11985260 .. 11988663
3404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011890.1

Sequence Viewer

Length: 1416 bp
ATGCCGACCGACTTAGATAACTCCTCCACAGCTTCAGGGGAGGCCAGTGTTTCTTCCTCCGGTAACCAAACAGCTCCGGCTCCAAAACCCACCACCAAGAAAAAGCGAAACTTGCCGGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCCAAGACCCTTATGGCAACGAACCGATTTGTTTGCGAAATTTGCAACAAAGGGTTTCAGAGGGATCAGAATCTGCAACTCCATCGGCGAGGTCATAATCTGCCGTGGAAGCTGAGGCAGAGATCGAGCAAAGAGATCAAGAAGAGAGTCTATGTCTGCCCTGAAGCTTCTTGTGTCCACCACGATCCTTCTAGAGCTTTGGGCGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCGAAGAAATACGCGGTTCAGTCGGATTGGAAAGCTCATTCTAAGATTTGTGGCACCAGAGAGTATAAATGTGATTGTGGGACTTTGTTTTCAAGGAGGGATAGCTTCATAACACACAGGGCTTTCTGTGATGCTTTGGCTGAGGAAAGTGCTAGAGGTCCTTCTCAGACTCAAAATGTGAATTTGAATTCAGAATCAGACCCAAAGGTTCAAACAGTAAATTCACCACCAGCAGCAGCAGCACAGGCTTCAGTTCCATCCCAACCCAGTAGTTCTTCAGCTCCGTCTCAGCCAGCAGCTCTGCCTATTCAGGGTTCAGTTGGAGTGCCAGAGTTGCCCGAAAATCCCCCAGAAGATGCCGCTGCTGTGACTCAGCGGAAAGGACACTGTAGCAGCAGCAACAGCTCAAGCAGCAACGGTAGTACAAGCAGTAGTGTATTTGCAAGTTTATTTGCTTCTTCGACAACATCTGGAGCAAGCTTGCAACCTCCTGCATTTACTGACTTAATTCGAGCCATGGGGCAACCGGATCAACCAACTGACCTAGCACCATCTTCTTCAATTGAGCCTATCTCTCTTGGCCTCTCAACCAGTCACGCATCCTCAATTTTTGGATCTGCAGGACAGGAGCGTAGGCAGTATGCGCCTCCACCACAACCAGCTATGTCTGCCACTGCTCTACTTCAGAAAGCTGCTCAAATGGGTGCAGCAGCAACTAACGCATCGTTGCTTCGCGGGTTTGGCATTGTCTCCTCCTCATCTTCTTCCACACAGCAAGATAGCATGCAATGGAATCAGCGGCAAGCAGAATCGGACAGTGCCTCAATTGCTGCAGGGCTTGGACTTGGTCTTCCTTGTGACGGTTCTGGATGGAAGGAATTAATGATGGGAAGTCCTTCAATGTTTGGTCCCAAGCAACCACACTTGATCTTTTGGGATTGGGAATGGCTGCCGGTAATAACCCCAATGGTGGCCTGTCAGCCCTAA

Protein Analysis

471

Amino Acids

50.18

Weight (kDa)

8.86

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 99 - 133 1.2e-21 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 137 - 161 1.7e-14 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 164 - 202 1.2e-24 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 482
AccII CGCG 2 cut(s) 443, 1164
AciI CCGC 5 cut(s) 443, 789, 805, 1164, 1228
AclWI GGATC 5 cut(s) 122, 228, 335, 966, 1051
AcsI RAATTY 4 cut(s) 195, 610, 616, 649
AcuI CTGAAG 5 cut(s) 18, 339, 663, 690, 1097
AfaI GTAC 1 cut(s) 853
AfiI CCNNNNNNNGG 3 cut(s) 740, 1289, 1399
AgsI TTSAA 5 cut(s) 522, 616, 641, 990, 1329
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 3 cut(s) 159, 720, 1183
AlwI GGATC 5 cut(s) 122, 228, 335, 966, 1051
AlwNI CAGNNNCTG 1 cut(s) 229
AoxI GGCC 3 cut(s) 42, 1009, 1401
ApoI RAATTY 4 cut(s) 195, 610, 616, 649
AseI ATTAAT 1 cut(s) 1310
Asp700I GAANNNNTTC 1 cut(s) 1324
AspLEI GCGC 1 cut(s) 1075
AspS9I GGNCC 2 cut(s) 587, 1337
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 154, 645
AvaII GGWCC 2 cut(s) 587, 1337
BanI GGYRCC 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 1271
Bbv12I GWGCWC 1 cut(s) 431
BbvCI CCTCAGC 2 cut(s) 269, 570
BccI CCATC 5 cut(s) 246, 694, 988, 1293, 1309
BceAI ACGGC 2 cut(s) 244, 415
BcgI CGANNNNNNTGC 4 cut(s) 171, 205, 221, 255
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 3 cut(s) 159, 720, 1183
BfaI CTAG 3 cut(s) 348, 582, 974
BfmI CTRYAG 3 cut(s) 817, 1047, 1260
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 587, 1337
BmgT120I GGNCC 2 cut(s) 587, 1337
BmiI GGNNCC 3 cut(s) 81, 484, 1339
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 2 cut(s) 378, 690
BmsI GCATC 5 cut(s) 124, 550, 775, 1037, 1160
BmuI ACTGGG 2 cut(s) 378, 690
BpiI GAAGAC 1 cut(s) 1271
BplI GAGNNNNNCTC 2 cut(s) 986, 1018
BpmI CTGGAG 1 cut(s) 921
Bpu10I CCTNAGC 2 cut(s) 269, 570
BpuEI CTTGAG 1 cut(s) 820
BpuMI CCSGG 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 260, 945
BsaWI WCCGGW 2 cut(s) 59, 955
Bsc4I CCNNNNNNNGG 3 cut(s) 740, 1289, 1399
Bse118I RCCGGY 1 cut(s) 1381
Bse1I ACTGG 4 cut(s) 45, 373, 696, 1020
Bse3DI GCAATG 1 cut(s) 1223
Bse8I GATNNNNATC 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 260, 945
BseGI GGATG 3 cut(s) 686, 1028, 1304
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 740, 1289, 1399
BseMI GCAATG 1 cut(s) 1223
BseMII CTCAG 5 cut(s) 260, 561, 608, 731, 815
BseNI ACTGG 4 cut(s) 45, 373, 696, 1020
BseRI GAGGAG 3 cut(s) 13, 1171, 1174
BsgI GTGCAG 1 cut(s) 1155
Bsh1236I CGCG 2 cut(s) 443, 1164
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 44, 1011, 1403
BshNI GGYRCC 1 cut(s) 482
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 431
BsiSI CCGG 5 cut(s) 60, 77, 116, 956, 1382
BslFI GGGAC 2 cut(s) 523, 1323
BslI CCNNNNNNNGG 3 cut(s) 740, 1289, 1399
BsmAI GTCTC 3 cut(s) 159, 720, 1183
BsmBI CGTCTC 1 cut(s) 720
BsmFI GGGAC 2 cut(s) 523, 1323
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 3 cut(s) 44, 1011, 1403
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 958, 1043, 1356
Bsp19I CCATGG 1 cut(s) 945
BspACI CCGC 5 cut(s) 443, 789, 805, 1164, 1228
BspANI GGCC 3 cut(s) 44, 1011, 1403
BspCNI CTCAG 5 cut(s) 261, 562, 607, 730, 814
BspFNI CGCG 2 cut(s) 443, 1164
BspLI GGNNCC 3 cut(s) 81, 484, 1339
BspMAI CTGCAG 2 cut(s) 1051, 1264
BspPI GGATC 5 cut(s) 122, 228, 335, 966, 1051
BspT107I GGYRCC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 1223
BsrFI RCCGGY 1 cut(s) 1381
BsrI ACTGG 4 cut(s) 45, 373, 696, 1020
BssAI RCCGGY 1 cut(s) 1381
BssECI CCNNGG 2 cut(s) 260, 945
BssMI GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 958, 1043, 1356
BssT1I CCWWGG 1 cut(s) 945
Bst4CI ACNGT 5 cut(s) 646, 818, 848, 1247, 1292
Bst6I CTCTTC 1 cut(s) 293
BstC8I GCNNGC 5 cut(s) 723, 907, 911, 1214, 1233
BstDEI CTNAG 7 cut(s) 13, 269, 471, 570, 594, 717, 801
BstDSI CCRYGG 2 cut(s) 260, 945
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 3 cut(s) 686, 1028, 1304
BstFNI CGCG 2 cut(s) 443, 1164
BstHHI GCGC 1 cut(s) 1075
BstKTI GATC 9 cut(s) 130, 223, 281, 294, 343, 364, 961, 1046, 1359
BstMAI GTCTC 3 cut(s) 159, 720, 1183
BstMBI GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 958, 1043, 1356
BstMCI CGRYCG 1 cut(s) 9
BstNSI RCATGY 1 cut(s) 1216
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 3 cut(s) 817, 1047, 1260
BstUI CGCG 2 cut(s) 443, 1164
BstV2I GAAGAC 1 cut(s) 1271
BstX2I RGATCY 2 cut(s) 127, 1043
BstYI RGATCY 2 cut(s) 127, 1043
BsuRI GGCC 3 cut(s) 44, 1011, 1403
BtgI CCRYGG 2 cut(s) 260, 945
BtsCI GGATG 3 cut(s) 686, 1028, 1304
BtsI GCAGTG 1 cut(s) 1101
BtsIMutI CAGTG 4 cut(s) 52, 814, 1101, 1252
Cac8I GCNNGC 5 cut(s) 723, 907, 911, 1214, 1233
CaiI CAGNNNCTG 1 cut(s) 229
CfoI GCGC 1 cut(s) 1075
Cfr10I RCCGGY 1 cut(s) 1381
Cfr13I GGNCC 2 cut(s) 587, 1337
Csp6I GTAC 1 cut(s) 852
CviAII CATG 2 cut(s) 946, 1213
CviQI GTAC 1 cut(s) 852
DdeI CTNAG 7 cut(s) 13, 269, 471, 570, 594, 717, 801
DpnI GATC 9 cut(s) 129, 222, 280, 293, 342, 363, 960, 1045, 1358
DpnII GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 958, 1043, 1356
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 945
Eco47I GGWCC 2 cut(s) 587, 1337
Eco57I CTGAAG 5 cut(s) 18, 339, 663, 690, 1097
Eco91I GGTNACC 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 587
EcoO65I GGTNACC 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 945
ErhI CCWWGG 1 cut(s) 945
Esp3I CGTCTC 1 cut(s) 720
FaeI CATG 2 cut(s) 949, 1216
FaiI YATR 9 cut(s) 170, 252, 309, 495, 539, 947, 1071, 1094, 1214
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 368, 400
FaqI GGGAC 2 cut(s) 523, 1323
FatI CATG 2 cut(s) 945, 1212
FauI CCCGC 1 cut(s) 1157
FokI GGATG 3 cut(s) 673, 1015, 1311
FspBI CTAG 3 cut(s) 348, 582, 974
GlaI GCGC 1 cut(s) 1074
GsuI CTGGAG 1 cut(s) 921
HaeIII GGCC 3 cut(s) 44, 1011, 1403
HapII CCGG 5 cut(s) 60, 77, 116, 956, 1382
HhaI GCGC 1 cut(s) 1075
Hin1II CATG 2 cut(s) 949, 1216
Hin6I GCGC 1 cut(s) 1073
HinP1I GCGC 1 cut(s) 1073
HindIII AAGCTT 2 cut(s) 321, 907
HinfI GANTC 7 cut(s) 226, 303, 598, 623, 799, 1222, 1238
HpaII CCGG 5 cut(s) 60, 77, 116, 956, 1382
HphI GGTGA 2 cut(s) 154, 645
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 9 cut(s) 216, 225, 366, 454, 597, 622, 628, 1116, 1243
Hpy188III TCNNGA 5 cut(s) 131, 295, 348, 900, 1296
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 4 cut(s) 354, 600, 1297, 1335
HpyCH4III ACNGT 5 cut(s) 646, 818, 848, 1247, 1292
HpyF3I CTNAG 7 cut(s) 13, 269, 471, 570, 594, 717, 801
Hsp92II CATG 2 cut(s) 949, 1216
HspAI GCGC 1 cut(s) 1073
Kzo9I GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 958, 1043, 1356
LmnI GCTCC 5 cut(s) 79, 85, 715, 902, 1057
LweI GCATC 5 cut(s) 124, 550, 775, 1037, 1160
MaeI CTAG 3 cut(s) 348, 582, 974
MaeIII GTNAC 4 cut(s) 62, 796, 1022, 1286
MalI GATC 9 cut(s) 129, 222, 280, 293, 342, 363, 960, 1045, 1358
MboI GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 958, 1043, 1356
MfeI CAATTG 2 cut(s) 990, 1254
MflI RGATCY 2 cut(s) 127, 1043
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 9 cut(s) 195, 610, 616, 649, 936, 990, 1035, 1254, 1307
MlyI GAGTC 3 cut(s) 312, 592, 793
MmeI TCCRAC 2 cut(s) 432, 730
MroXI GAANNNNTTC 1 cut(s) 1324
MseI TTAA 3 cut(s) 375, 935, 1310
MspA1I CMGCKG 3 cut(s) 791, 805, 1228
MspI CCGG 5 cut(s) 60, 77, 116, 956, 1382
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 2 cut(s) 990, 1254
Mva1269I GAATGC 1 cut(s) 126
MvnI CGCG 2 cut(s) 443, 1164
NciI CCSGG 1 cut(s) 117
NcoI CCATGG 1 cut(s) 945
NdeII GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 958, 1043, 1356
NlaIII CATG 2 cut(s) 949, 1216
NlaIV GGNNCC 3 cut(s) 81, 484, 1339
NmuCI GTSAC 3 cut(s) 796, 1022, 1286
NspI RCATGY 1 cut(s) 1216
PaeI GCATGC 1 cut(s) 1216
PctI GAATGC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 1324
PfeI GAWTC 4 cut(s) 226, 623, 1222, 1238
PflFI GACNNNGTC 1 cut(s) 1275
PleI GAGTC 3 cut(s) 311, 592, 793
PpsI GAGTC 3 cut(s) 311, 592, 793
PpuMI RGGWCCY 1 cut(s) 587
PshBI ATTAAT 1 cut(s) 1310
Psp5II RGGWCCY 1 cut(s) 587
PspEI GGTNACC 1 cut(s) 62
PspN4I GGNNCC 3 cut(s) 81, 484, 1339
PspPI GGNCC 2 cut(s) 587, 1337
PspPPI RGGWCCY 1 cut(s) 587
PstI CTGCAG 2 cut(s) 1051, 1264
PstNI CAGNNNCTG 1 cut(s) 229
PsuI RGATCY 2 cut(s) 127, 1043
PsyI GACNNNGTC 1 cut(s) 1275
RsaI GTAC 1 cut(s) 853
RsaNI GTAC 1 cut(s) 852
SaqAI TTAA 3 cut(s) 375, 935, 1310
Sau3AI GATC 9 cut(s) 127, 220, 278, 291, 340, 361, 958, 1043, 1356
Sau96I GGNCC 2 cut(s) 587, 1337
SchI GAGTC 3 cut(s) 312, 592, 793
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 431
SfaNI GCATC 5 cut(s) 124, 550, 775, 1037, 1160
SfcI CTRYAG 3 cut(s) 817, 1047, 1260
SinI GGWCC 2 cut(s) 587, 1337
SmlI CTYRAG 1 cut(s) 835
SmoI CTYRAG 1 cut(s) 835
SphI GCATGC 1 cut(s) 1216
Sse9I AATT 9 cut(s) 195, 610, 616, 649, 936, 990, 1035, 1254, 1307
SsiI CCGC 5 cut(s) 443, 789, 805, 1164, 1228
SspMI CTAG 3 cut(s) 348, 582, 974
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 5 cut(s) 646, 818, 848, 1247, 1292
TaqI TCGA 4 cut(s) 281, 431, 890, 940
TaqII GACCGA 1 cut(s) 23
TasI AATT 9 cut(s) 195, 610, 616, 649, 936, 990, 1035, 1254, 1307
TatI WGTACW 1 cut(s) 851
TauI GCSGC 2 cut(s) 791, 1231
TfiI GAWTC 4 cut(s) 226, 623, 1222, 1238
Tru1I TTAA 3 cut(s) 375, 935, 1310
Tru9I TTAA 3 cut(s) 375, 935, 1310
TscAI CASTG 4 cut(s) 52, 821, 1108, 1252
TseFI GTSAC 3 cut(s) 796, 1022, 1286
Tsp45I GTSAC 3 cut(s) 796, 1022, 1286
TspDTI ATGAA 1 cut(s) 526
TspGWI ACGGA 1 cut(s) 702
TspRI CASTG 4 cut(s) 52, 821, 1108, 1252
Tth111I GACNNNGTC 1 cut(s) 1275
VpaK11BI GGWCC 2 cut(s) 587, 1337
VspI ATTAAT 1 cut(s) 1310
XapI RAATTY 4 cut(s) 195, 610, 616, 649
XbaI TCTAGA 1 cut(s) 347
XceI RCATGY 1 cut(s) 1216
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 1324
XspI CTAG 3 cut(s) 348, 582, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.