Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7992216.1

Orthogroup ID

OG0009247

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 521

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7992216.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 425 bp

cagagatcgagcaaagagatcaagaagagagtctatgtctgccctgaagcttcttgtgtccaccacgatccttctagagctttgggcgatctgactgggattaagaagcacttttgcagaaagcacggggagaagaagtggaaatgcgacaagtgctcgaagaaatacgcggttcagtcggattggaaagctcattctaagatttgtggcaccagagagtataaatgtgattgtgggactttgttttcaaggagggatagcttcataacacacagggctttctgtgatgctttggctgaggaaagtgctagaggtccttctcagactcaaaatgtgaatttgaattcagaatcagacccaaaggttcaaacagtaaattcacctccaccagcagcagcagcacaggcttcagttccatcccaacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009937 GO:0009966 GO:0010029 GO:0010154 GO:0010431 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023051 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048580 GO:0048583 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

142

Amino Acids

15.81

Weight (kDa)

9.29

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50700 AT5G66730
fragaria_vesca	FvH4_1g13710 FvH4_1g13710
malus_domestica	MD02G1151700.v1.1 MD15G1266200.v1.1
prunus_persica	Prupe.7G151500_v2.0.a1
pyrus_communis	pycom02g11890 pycom15g23170
rosa_chinensis	RchiOBHm_Chr2g0102031
rosa_laevigata	RLG00000017128
rosa_multiflora	Rmu_co7992216.1_g000001 Rmu_co8011972.1_g000001 Rmu_sc0020987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140800
rosa_rugosa	Rorug02G0104200.1 Rorug02G0104300
rosa_samantha	Rh2AG152300 Rh2BG157700 Rh2CG157600 Rh2DG157800
rosa_wichuraiana	Rw2G011890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AccII	CGCG	1 cut(s)	170
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	3 cut(s)	337, 343, 376
AcuI	CTGAAG	2 cut(s)	66, 393
AgsI	TTSAA	3 cut(s)	249, 343, 368
AluBI	AGCT	4 cut(s)	50, 80, 191, 261
AluI	AGCT	4 cut(s)	50, 80, 191, 261
Alw21I	GWGCWC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	62
ApeKI	GCWGC	3 cut(s)	392, 395, 398
ApoI	RAATTY	3 cut(s)	337, 343, 376
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	404, 407, 410
BccI	CCATC	1 cut(s)	424
BfaI	CTAG	2 cut(s)	75, 309
BisI	GCNGC	3 cut(s)	393, 396, 399
BlsI	GCNGC	3 cut(s)	394, 397, 400
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	277
BmuI	ACTGGG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse1I	ACTGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	416
BseMII	CTCAG	2 cut(s)	288, 335
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	404, 407, 410
Bsh1236I	CGCG	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	4 cut(s)	5, 18, 67, 88
BspACI	CCGC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	289, 334
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	4 cut(s)	5, 18, 67, 88
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	1 cut(s)	20
BstDEI	CTNAG	3 cut(s)	198, 297, 321
BstF5I	GGATG	1 cut(s)	416
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	4 cut(s)	8, 21, 70, 91
BstMBI	GATC	4 cut(s)	5, 18, 67, 88
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 398, 404
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	404, 407, 410
BtsCI	GGATG	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	314
CviJI	RGCY	7 cut(s)	50, 80, 191, 261, 278, 296, 407
CviKI_1	RGCY	7 cut(s)	50, 80, 191, 261, 278, 296, 407
DdeI	CTNAG	3 cut(s)	198, 297, 321
DpnI	GATC	4 cut(s)	7, 20, 69, 90
DpnII	GATC	4 cut(s)	5, 18, 67, 88
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	2 cut(s)	66, 393
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	343
FaiI	YATR	3 cut(s)	36, 222, 266
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	393, 396, 399
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	3 cut(s)	393, 396, 399
FspBI	CTAG	2 cut(s)	75, 309
GluI	GCNGC	3 cut(s)	393, 396, 399
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	3 cut(s)	30, 325, 350
HphI	GGTGA	1 cut(s)	372
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	93, 181, 324, 349, 355
Hpy188III	TCNNGA	2 cut(s)	22, 75
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	81, 327
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 398, 404
HpyF3I	CTNAG	3 cut(s)	198, 297, 321
Kzo9I	GATC	4 cut(s)	5, 18, 67, 88
LpnPI	CCDG	6 cut(s)	57, 81, 226, 259, 389, 402
Lsp1109I	GCAGC	3 cut(s)	404, 407, 410
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	2 cut(s)	75, 309
MalI	GATC	4 cut(s)	7, 20, 69, 90
MboI	GATC	4 cut(s)	5, 18, 67, 88
MboII	GAAGA	3 cut(s)	37, 145, 172
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	3 cut(s)	337, 343, 376
MlyI	GAGTC	2 cut(s)	39, 319
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	4 cut(s)	246, 292, 305, 393
MseI	TTAA	1 cut(s)	102
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	153, 398, 404
NdeII	GATC	4 cut(s)	5, 18, 67, 88
NlaIV	GGNNCC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	394, 397, 400
PleI	GAGTC	2 cut(s)	38, 319
PpsI	GAGTC	2 cut(s)	38, 319
PpuMI	RGGWCCY	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	314
PspPPI	RGGWCCY	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	3 cut(s)	393, 396, 399
Sau3AI	GATC	4 cut(s)	5, 18, 67, 88
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	2 cut(s)	39, 319
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	7 cut(s)	52, 82, 193, 263, 316, 366, 385
SfaNI	GCATC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	314
Sse9I	AATT	3 cut(s)	337, 343, 376
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	2 cut(s)	75, 309
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	8, 158
TasI	AATT	3 cut(s)	337, 343, 376
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	3 cut(s)	392, 395, 398
TspDTI	ATGAA	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	3 cut(s)	337, 343, 376
XbaI	TCTAGA	1 cut(s)	74
XspI	CTAG	2 cut(s)	75, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.