AT5G66730

zinc finger protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
26641586 .. 26644738
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G66730.1

Sequence Viewer

Length: 1503 bp
ATGCCGGTTGATTTAGATAATTCCTCTACAGTTTCCGGCGATGCAAGCGTCTCATCGACCGGAAACCAAAATCTAACTCCTAAATCCGTCGGGAAGAAGAAACGGAATCTTCCTGGAATGCCTGATCCAGACGCTGAAGTGATAGCTTTGTCACCTAAAACACTTATGGCAACGAATCGATTCGTTTGCGAAATCTGTAACAAAGGTTTTCAACGTGACCAGAATCTTCAGCTTCATCGTCGTGGTCACAATCTTCCATGGAAACTTCGACAGAGATCGACTAAAGAAGTGAGGAAGAAGGTTTATGTTTGTCCTGTTTCTGGCTGTGTTCATCATGACCCTTCACGTGCTCTTGGAGATCTTACTGGAATCAAGAAACACTTTTGTCGGAAACACGGCGAGAAGAAATGGAAGTGTGAGAAATGTTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCATTCGAAGATTTGTGGCACCAAGGAGTATAAATGCGATTGTGGAACTCTGTTTTCTAGGAGAGATAGCTTTATAACGCATAGAGCCTTTTGTGATGCCTTGGCTGAAGAGAGTGCGAAGAATCATACTCAAAGCAAGAAACTTTATCCAGAAACTGTCACTAGGAAGAATCCTGAAATTGAGCAAAAATCTCCAGCAGCTGTTGAGTCTTCTCCGTCATTACCGCCTTCTTCTCCGCCATCGGTTGCTATAGCTCCGGCACCGGCTATTTCGGTTGAGACTGAGTCTGTCAAAATCATATCTTCCTCTGTTTTGCCGATTCAGAATTCTCCAGAATCTCAAGAAAACAACAATCATCCTGAAGTCATTATTGAGGAAGCTTCAAGAACGATCGGGTTCAATGTTAGCTCATCGGATCTAAGCAATGATCACAGTAACAACAATGGTGGATACGCAGGTTTGTTTGTATCATCAACAGCTTCGCCTAGTTTATATGCTTCCTCAACCGCTTCTCCAAGTCTATTCGCACCATCGTCCTCCATGGAACCCATCTCTCTCTGTCTCTCGACGAACCCTTCTTTGTTCGGACCAACAATACGAGATCCGCCACATTTCCTAACTCCTCTCCCTCCTCAACCGGCAATGTCAGCTACTGCATTGCTCCAAAAAGCTGCACAAATGGGTTCCACGGGATCAGGAGGTTCGTTGCTTCGCGGGTTAGGCATAGTTTCAACTACTTCTTCATCTATGGAACTCAGCAATCATGATGCATTGTCATTAGCTCCTGGTCTTGGACTTGGACTACCTTGTAGCAGCGGTGGTAGCGGATCGGGTCTAAAAGAGCTCATGATGGGGAATTCATCGGTGTTTGGTCCGAAACAGACGACACTAGACTTTCTTGGATTAGGAAGAGCTGTTGGTAATGGTGGTAATACCGGAGGTGGATTGTCTGCTCTGTTAACTTCTATAGGTGGTGGAGGTGGAATCGATCTGTTTGGATCAGGGGAGTTTTCAGGCAAAGACATTGGAAGAAGTTCGTAA

Protein Analysis

500

Amino Acids

52.63

Weight (kDa)

8.93

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 98 - 132 1.8e-20 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 136 - 160 9.1e-15 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 163 - 200 3.7e-24 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 536
Acc36I ACCTGC 1 cut(s) 908
AccB1I GGYRCC 2 cut(s) 479, 721
AccII CGCG 1 cut(s) 1176
AciI CCGC 7 cut(s) 686, 698, 969, 1067, 1176, 1278, 1287
AclWI GGATC 6 cut(s) 119, 885, 1058, 1162, 1297, 1468
AcsI RAATTY 2 cut(s) 787, 1318
AcuI CTGAAG 4 cut(s) 156, 212, 588, 843
AcvI CACGTG 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 320, 1253
AgsI TTSAA 5 cut(s) 212, 446, 846, 862, 1194
AjnI CCWGG 2 cut(s) 112, 1246
Alw21I GWGCWC 2 cut(s) 352, 1308
Alw26I GTCTC 3 cut(s) 55, 734, 1028
AlwI GGATC 6 cut(s) 119, 885, 1058, 1162, 1297, 1468
AlwNI CAGNNNCTG 4 cut(s) 134, 617, 662, 1115
ApeKI GCWGC 3 cut(s) 659, 1133, 1275
ApoI RAATTY 2 cut(s) 787, 1318
Asp700I GAANNNNTTC 2 cut(s) 179, 1495
AspS9I GGNCC 2 cut(s) 1049, 1334
AsuHPI GGTGA 1 cut(s) 144
AsuII TTCGAA 1 cut(s) 467
AvaII GGWCC 2 cut(s) 1049, 1334
BaeI ACNNNNGTAYC 2 cut(s) 904, 937
BanI GGYRCC 2 cut(s) 479, 721
BanII GRGCYC 1 cut(s) 1308
BbrPI CACGTG 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 2 cut(s) 352, 1308
BbvI GCAGC 3 cut(s) 671, 1120, 1287
BccI CCATC 4 cut(s) 709, 1000, 1019, 1306
BceAI ACGGC 1 cut(s) 412
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 2 cut(s) 114, 1248
BciVI GTATCC 1 cut(s) 905
BclI TGATCA 1 cut(s) 889
BcoDI GTCTC 3 cut(s) 55, 734, 1028
BfaI CTAG 4 cut(s) 519, 624, 948, 1352
BfmI CTRYAG 3 cut(s) 27, 711, 1428
BfuAI ACCTGC 1 cut(s) 908
BfuI GTATCC 1 cut(s) 905
BglII AGATCT 1 cut(s) 358
BisI GCNGC 3 cut(s) 660, 1134, 1276
BlsI GCNGC 3 cut(s) 661, 1135, 1277
Bme1390I CCNGG 2 cut(s) 114, 1248
Bme18I GGWCC 2 cut(s) 1049, 1334
BmgT120I GGNCC 2 cut(s) 1049, 1334
BmiI GGNNCC 4 cut(s) 481, 723, 1008, 1147
BmrFI CCNGG 2 cut(s) 114, 1248
BmsI GCATC 3 cut(s) 31, 547, 1219
BpiI GAAGAC 1 cut(s) 663
BpmI CTGGAG 2 cut(s) 639, 777
Bpu14I TTCGAA 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 786
Bsa29I ATCGAT 2 cut(s) 178, 1449
BsaAI YACGTR 1 cut(s) 347
BsaJI CCNNGG 5 cut(s) 257, 483, 561, 1002, 1149
BsaWI WCCGGW 2 cut(s) 59, 1397
BsaXI ACNNNNNCTCC 2 cut(s) 958, 988
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 1253
Bse118I RCCGGY 3 cut(s) 4, 724, 1099
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 3 cut(s) 892, 1110, 1118
BseBI CCWGG 2 cut(s) 114, 1248
BseCI ATCGAT 2 cut(s) 178, 1449
BseDI CCNNGG 5 cut(s) 257, 483, 561, 1002, 1149
BseGI GGATG 1 cut(s) 817
BseLI CCNNNNNNNGG 2 cut(s) 320, 1253
BseMI GCAATG 3 cut(s) 892, 1110, 1118
BseMII CTCAG 2 cut(s) 735, 1231
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 2 cut(s) 1074, 1083
BseXI GCAGC 3 cut(s) 671, 1120, 1287
BsgI GTGCAG 1 cut(s) 1119
Bsh1236I CGCG 1 cut(s) 1176
Bsh1285I CGRYCG 2 cut(s) 60, 855
BshNI GGYRCC 2 cut(s) 479, 721
BshVI ATCGAT 2 cut(s) 178, 1449
BsiEI CGRYCG 2 cut(s) 60, 855
BsiHKAI GWGCWC 2 cut(s) 352, 1308
BsiSI CCGG 7 cut(s) 5, 36, 60, 719, 725, 1100, 1398
BslI CCNNNNNNNGG 2 cut(s) 320, 1253
BsmAI GTCTC 3 cut(s) 55, 734, 1028
BsmBI CGTCTC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 123
Bsp119I TTCGAA 1 cut(s) 467
Bsp1286I GDGCHC 2 cut(s) 352, 1308
Bsp19I CCATGG 2 cut(s) 257, 1002
BspACI CCGC 7 cut(s) 686, 698, 969, 1067, 1176, 1278, 1287
BspCNI CTCAG 2 cut(s) 736, 1230
BspDI ATCGAT 2 cut(s) 178, 1449
BspFNI CGCG 1 cut(s) 1176
BspHI TCATGA 3 cut(s) 334, 1225, 1308
BspLI GGNNCC 4 cut(s) 481, 723, 1008, 1147
BspMI ACCTGC 1 cut(s) 908
BspPI GGATC 6 cut(s) 119, 885, 1058, 1162, 1297, 1468
BspQI GCTCTTC 1 cut(s) 1366
BspT104I TTCGAA 1 cut(s) 467
BspT107I GGYRCC 2 cut(s) 479, 721
BsrDI GCAATG 3 cut(s) 892, 1110, 1118
BsrFI RCCGGY 3 cut(s) 4, 724, 1099
BsrI ACTGG 1 cut(s) 370
BssAI RCCGGY 3 cut(s) 4, 724, 1099
BssECI CCNNGG 5 cut(s) 257, 483, 561, 1002, 1149
BssT1I CCWWGG 4 cut(s) 257, 483, 561, 1002
Bst2UI CCWGG 2 cut(s) 114, 1248
Bst4CI ACNGT 3 cut(s) 31, 619, 896
Bst6I CTCTTC 2 cut(s) 564, 1366
BstBAI YACGTR 1 cut(s) 347
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 4 cut(s) 429, 744, 881, 1217
BstDSI CCRYGG 3 cut(s) 257, 1002, 1149
BstF5I GGATG 1 cut(s) 817
BstFNI CGCG 1 cut(s) 1176
BstMAI GTCTC 3 cut(s) 55, 734, 1028
BstMCI CGRYCG 2 cut(s) 60, 855
BstMWI GCNNNNNNNGC 4 cut(s) 45, 1109, 1182, 1284
BstNI CCWGG 2 cut(s) 114, 1248
BstSCI CCNGG 2 cut(s) 112, 1246
BstSFI CTRYAG 3 cut(s) 27, 711, 1428
BstUI CGCG 1 cut(s) 1176
BstV1I GCAGC 3 cut(s) 671, 1120, 1287
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 3 cut(s) 358, 877, 1063
BstYI RGATCY 3 cut(s) 358, 877, 1063
Bsu15I ATCGAT 2 cut(s) 178, 1449
BsuI GTATCC 1 cut(s) 905
BsuTUI ATCGAT 2 cut(s) 178, 1449
BtgI CCRYGG 3 cut(s) 257, 1002, 1149
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 817
BveI ACCTGC 1 cut(s) 908
Cac8I GCNNGC 1 cut(s) 46
CaiI CAGNNNCTG 4 cut(s) 134, 617, 662, 1115
CciI TCATGA 3 cut(s) 334, 1225, 1308
Cfr10I RCCGGY 3 cut(s) 4, 724, 1099
Cfr13I GGNCC 2 cut(s) 1049, 1334
ClaI ATCGAT 2 cut(s) 178, 1449
CseI GACGC 2 cut(s) 37, 140
CspCI CAANNNNNGTGG 2 cut(s) 889, 924
CviAII CATG 5 cut(s) 258, 335, 1003, 1226, 1309
DdeI CTNAG 4 cut(s) 429, 744, 881, 1217
Eam1104I CTCTTC 2 cut(s) 564, 1366
EarI CTCTTC 2 cut(s) 564, 1366
EciI GGCGGA 2 cut(s) 687, 1056
Ecl136II GAGCTC 1 cut(s) 1306
Eco130I CCWWGG 4 cut(s) 257, 483, 561, 1002
Eco24I GRGCYC 1 cut(s) 1308
Eco47I GGWCC 2 cut(s) 1049, 1334
Eco53kI GAGCTC 1 cut(s) 1306
Eco57I CTGAAG 4 cut(s) 156, 212, 588, 843
Eco72I CACGTG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 1306
EcoRI GAATTC 2 cut(s) 787, 1318
EcoRII CCWGG 2 cut(s) 112, 1246
EcoT14I CCWWGG 4 cut(s) 257, 483, 561, 1002
EcoT22I ATGCAT 1 cut(s) 1234
EcoT38I GRGCYC 1 cut(s) 1308
ErhI CCWWGG 4 cut(s) 257, 483, 561, 1002
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 5 cut(s) 261, 338, 1006, 1229, 1312
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FatI CATG 5 cut(s) 257, 334, 1002, 1225, 1308
FauI CCCGC 1 cut(s) 1169
FbaI TGATCA 1 cut(s) 889
Fnu4HI GCNGC 3 cut(s) 660, 1134, 1276
FokI GGATG 1 cut(s) 804
FriOI GRGCYC 1 cut(s) 1308
Fsp4HI GCNGC 3 cut(s) 660, 1134, 1276
FspBI CTAG 4 cut(s) 519, 624, 948, 1352
GluI GCNGC 3 cut(s) 660, 1134, 1276
GsuI CTGGAG 2 cut(s) 639, 777
HapII CCGG 7 cut(s) 5, 36, 60, 719, 725, 1100, 1398
HgaI GACGC 2 cut(s) 37, 140
Hin1II CATG 5 cut(s) 261, 338, 1006, 1229, 1312
HincII GTYRAC 1 cut(s) 1422
HindII GTYRAC 1 cut(s) 1422
HindIII AAGCTT 1 cut(s) 840
HpaI GTTAAC 1 cut(s) 1422
HpaII CCGG 7 cut(s) 5, 36, 60, 719, 725, 1100, 1398
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 1422
Hpy188I TCNGA 6 cut(s) 390, 451, 786, 877, 1049, 1338
Hpy8I GTNNAC 1 cut(s) 1422
Hpy99I CGWCG 3 cut(s) 92, 243, 1033
HpyAV CCTTC 4 cut(s) 292, 351, 699, 1047
HpyCH4III ACNGT 3 cut(s) 31, 619, 896
HpyCH4IV ACGT 2 cut(s) 214, 346
HpyCH4V TGCA 4 cut(s) 44, 1118, 1136, 1232
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 1109, 1182, 1284
HpyF3I CTNAG 4 cut(s) 429, 744, 881, 1217
HpySE526I ACGT 2 cut(s) 214, 346
Hsp92II CATG 5 cut(s) 261, 338, 1006, 1229, 1312
Ksp22I TGATCA 1 cut(s) 889
KspAI GTTAAC 1 cut(s) 1422
LguI GCTCTTC 1 cut(s) 1366
LmnI GCTCC 3 cut(s) 721, 1128, 1249
Lsp1109I GCAGC 3 cut(s) 671, 1120, 1287
LweI GCATC 3 cut(s) 31, 547, 1219
MaeI CTAG 4 cut(s) 519, 624, 948, 1352
MaeII ACGT 2 cut(s) 214, 346
MaeIII GTNAC 6 cut(s) 150, 197, 215, 245, 619, 896
MflI RGATCY 3 cut(s) 358, 877, 1063
MhlI GDGCHC 2 cut(s) 352, 1308
MluCI AATT 4 cut(s) 19, 639, 787, 1318
MlyI GAGTC 2 cut(s) 677, 755
MmeI TCCRAC 1 cut(s) 368
Mph1103I ATGCAT 1 cut(s) 1234
MroXI GAANNNNTTC 2 cut(s) 179, 1495
MseI TTAA 1 cut(s) 1421
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 662, 1278
MspI CCGG 7 cut(s) 5, 36, 60, 719, 725, 1100, 1398
MspR9I CCNGG 2 cut(s) 114, 1248
Mva1269I GAATGC 1 cut(s) 123
MvaI CCWGG 2 cut(s) 114, 1248
MvnI CGCG 1 cut(s) 1176
MwoI GCNNNNNNNGC 4 cut(s) 45, 1109, 1182, 1284
NcoI CCATGG 2 cut(s) 257, 1002
NlaIII CATG 5 cut(s) 261, 338, 1006, 1229, 1312
NlaIV GGNNCC 4 cut(s) 481, 723, 1008, 1147
NmuCI GTSAC 4 cut(s) 150, 215, 245, 619
NsiI ATGCAT 1 cut(s) 1234
NspV TTCGAA 1 cut(s) 467
PagI TCATGA 3 cut(s) 334, 1225, 1308
PciSI GCTCTTC 1 cut(s) 1366
PctI GAATGC 1 cut(s) 123
PdmI GAANNNNTTC 2 cut(s) 179, 1495
PflFI GACNNNGTC 1 cut(s) 745
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 3 cut(s) 661, 1135, 1277
Ple19I CGATCG 1 cut(s) 855
PleI GAGTC 2 cut(s) 676, 754
PmaCI CACGTG 1 cut(s) 347
PmlI CACGTG 1 cut(s) 347
PpsI GAGTC 2 cut(s) 676, 754
Ppu21I YACGTR 1 cut(s) 347
PsiI TTATAA 1 cut(s) 536
Psp124BI GAGCTC 1 cut(s) 1308
Psp6I CCWGG 2 cut(s) 112, 1246
PspCI CACGTG 1 cut(s) 347
PspGI CCWGG 2 cut(s) 112, 1246
PspN4I GGNNCC 4 cut(s) 481, 723, 1008, 1147
PspPI GGNCC 2 cut(s) 1049, 1334
PstNI CAGNNNCTG 4 cut(s) 134, 617, 662, 1115
PsuI RGATCY 3 cut(s) 358, 877, 1063
PsyI GACNNNGTC 1 cut(s) 745
PvuI CGATCG 1 cut(s) 855
PvuII CAGCTG 1 cut(s) 662
RseI CAYNNNNRTG 1 cut(s) 240
SacI GAGCTC 1 cut(s) 1308
SapI GCTCTTC 1 cut(s) 1366
SaqAI TTAA 1 cut(s) 1421
SatI GCNGC 3 cut(s) 660, 1134, 1276
Sau96I GGNCC 2 cut(s) 1049, 1334
SchI GAGTC 2 cut(s) 677, 755
ScrFI CCNGG 2 cut(s) 114, 1248
SduI GDGCHC 2 cut(s) 352, 1308
SfaNI GCATC 3 cut(s) 31, 547, 1219
SfcI CTRYAG 3 cut(s) 27, 711, 1428
SfuI TTCGAA 1 cut(s) 467
SinI GGWCC 2 cut(s) 1049, 1334
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 801
SmoI CTYRAG 1 cut(s) 801
Sse9I AATT 4 cut(s) 19, 639, 787, 1318
SsiI CCGC 7 cut(s) 686, 698, 969, 1067, 1176, 1278, 1287
SspMI CTAG 4 cut(s) 519, 624, 948, 1352
SstI GAGCTC 1 cut(s) 1308
StyD4I CCNGG 2 cut(s) 112, 1246
StyI CCWWGG 4 cut(s) 257, 483, 561, 1002
TaaI ACNGT 3 cut(s) 31, 619, 896
TaiI ACGT 2 cut(s) 217, 349
TaqI TCGA 7 cut(s) 56, 178, 268, 278, 467, 1028, 1449
TasI AATT 4 cut(s) 19, 639, 787, 1318
Tru1I TTAA 1 cut(s) 1421
Tru9I TTAA 1 cut(s) 1421
TseFI GTSAC 4 cut(s) 150, 215, 245, 619
TseI GCWGC 3 cut(s) 659, 1133, 1275
Tsp45I GTSAC 4 cut(s) 150, 215, 245, 619
TspDTI ATGAA 4 cut(s) 224, 320, 1194, 1311
TspGWI ACGGA 3 cut(s) 76, 118, 666
Tth111I GACNNNGTC 1 cut(s) 745
VpaK11BI GGWCC 2 cut(s) 1049, 1334
XapI RAATTY 2 cut(s) 787, 1318
XmnI GAANNNNTTC 2 cut(s) 179, 1495
XspI CTAG 4 cut(s) 519, 624, 948, 1352
Zsp2I ATGCAT 1 cut(s) 1234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.