AT3G51060

Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI- related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
18964129 .. 18966405
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51060.1

Sequence Viewer

Length: 1113 bp
ATGGCGGGGTTTTTCTCGCTAGACGGTGGTGGAGGAGGAGGCGGAGGTGGAGGTAACAACCAAGAAGATCACCGGAGCAACACAAATCCTCCTCCGCCTGTATCAGAAGCTTGGCTCTGGTATAGAAACCCTAACGTTAACGCAAACGCAAACACAAACGTTAACGCAAACGCTCCTTCTTCGTCAAACGCTGCTTTAGGAACACTTGAGTTATGGCAAAACCACAATCAGCAAGAGATCATGTTTCAGCATCAGCAACATCAGCAAAGGTTGGATCTTTACTCTTCCGCCGCAGGTTTAGGTGTTGGACCAAGTAATCATAACCAATTCGATATCTCCGGCGAAACTTCAACCGCCGGCGCCGGAAGAGCTGCGGCGATGATGATGATTCGTAGTGGTGGTAGCGGAGGAGGAAGTGGTGGTGTGAGCTGTCAAGACTGTGGGAATCAAGCGAAGAAAGATTGTTCTCACATGAGGTGTAGAACTTGTTGTAAAAGCCGTGGCTTCGAGTGTTCTACTCACGTGAGAAGCACGTGGGTCCCTGCTGCTAAACGCCGTGAGAGACAACAGCAATTAGCTACGGTCCAGCCTCAAACTCAGCTGCCTCGCGGTGAGAGCGTTCCTAAACGCCACCGTGAAAATTTACCGGCAACTTCATCGTCTCTTGTCTGCACTCGCATACCTTCTCATTCAGGGCTAGAAGTTGGCAATTTCCCGGCGGAGGTGAGTTCATCGGCGGTGTTTAGGTGCGTGCGTGTGAGCTCAGTAGAAGATGGAGAAGAAGAGTTTGCTTACCAAACAGCTGTAAGCATTGGTGGTCACATTTTCAAAGGCATTTTATACGACCTCGGTCCTGGAAGTAGTGGTGGCGGAGGCTACAACGTTGTTGCCGCCGGTGAGAGCTCCTCTGGTGGTGGTGGAGCTCAACAGCTGAATCTCATAACAGCTGGCTCTGTAACCGTTGCTACCGCTTCTTCCTCTACTCCAAACCTCGGTGGTATTGGCAGCTCATCAGCCGCGGCAGCCACGTACATTGATCCAGCCGCTCTTTATCCAACTCCGATCAATACATTCATGGCCGGTACACAATTCTTTCCCAACCCAAGATCATGA

Protein Analysis

370

Amino Acids

38.35

Weight (kDa)

7.13

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 141 - 285 5.9e-64 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 1046
AccII CGCG 2 cut(s) 609, 1019
AclI AACGTT 3 cut(s) 135, 159, 882
AclWI GGATC 2 cut(s) 282, 1031
AcoI YGGCCR 1 cut(s) 1077
AcsI RAATTY 1 cut(s) 640
AcvI CACGTG 2 cut(s) 523, 534
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 2 cut(s) 1031, 1084
AfiI CCNNNNNNNGG 2 cut(s) 721, 992
AgsI TTSAA 2 cut(s) 351, 829
AjnI CCWGG 1 cut(s) 853
Alw21I GWGCWC 3 cut(s) 764, 905, 925
Alw26I GTCTC 2 cut(s) 556, 666
AlwI GGATC 2 cut(s) 282, 1031
AoxI GGCC 1 cut(s) 1077
ApeKI GCWGC 6 cut(s) 191, 371, 545, 601, 1005, 1022
ApoI RAATTY 1 cut(s) 640
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 4 cut(s) 308, 538, 583, 851
AsuC2I CCSGG 1 cut(s) 716
AsuHPI GGTGA 4 cut(s) 62, 623, 736, 908
AvaII GGWCC 4 cut(s) 308, 538, 583, 851
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 3 cut(s) 764, 905, 925
BbrPI CACGTG 2 cut(s) 523, 534
Bbv12I GWGCWC 3 cut(s) 764, 905, 925
BbvI GCAGC 6 cut(s) 178, 358, 532, 588, 1017, 1034
BccI CCATC 1 cut(s) 767
BceAI ACGGC 2 cut(s) 483, 540
BcgI CGANNNNNNTGC 2 cut(s) 639, 673
BciT130I CCWGG 1 cut(s) 855
BcnI CCSGG 1 cut(s) 716
BcoDI GTCTC 2 cut(s) 556, 666
BfaI CTAG 2 cut(s) 20, 698
BfoI RGCGCY 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 716, 855
Bme18I GGWCC 4 cut(s) 308, 538, 583, 851
BmgT120I GGNCC 4 cut(s) 308, 538, 583, 851
BmiI GGNNCC 3 cut(s) 361, 539, 540
BmrFI CCNGG 2 cut(s) 716, 855
BmsI GCATC 1 cut(s) 259
BoxI GACNNNNGTC 1 cut(s) 849
BplI GAGNNNNNCTC 2 cut(s) 890, 922
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 716
BsaAI YACGTR 3 cut(s) 523, 534, 1029
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 499, 847, 991, 1017
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 2 cut(s) 721, 992
Bse118I RCCGGY 4 cut(s) 356, 646, 893, 1079
BseBI CCWGG 1 cut(s) 855
BseDI CCNNGG 4 cut(s) 499, 847, 991, 1017
BseLI CCNNNNNNNGG 2 cut(s) 721, 992
BseMII CTCAG 2 cut(s) 611, 777
BseRI GAGGAG 5 cut(s) 48, 51, 81, 423, 895
BseXI GCAGC 6 cut(s) 178, 358, 532, 588, 1017, 1034
BsgI GTGCAG 1 cut(s) 655
Bsh1236I CGCG 2 cut(s) 609, 1019
BshFI GGCC 1 cut(s) 1079
BshNI GGYRCC 1 cut(s) 359
BsiHKAI GWGCWC 3 cut(s) 764, 905, 925
BsiSI CCGG 8 cut(s) 73, 339, 357, 363, 647, 716, 894, 1080
BslFI GGGAC 1 cut(s) 524
BslI CCNNNNNNNGG 2 cut(s) 721, 992
BsmAI GTCTC 2 cut(s) 556, 666
BsmBI CGTCTC 1 cut(s) 666
BsmFI GGGAC 1 cut(s) 524
BsnI GGCC 1 cut(s) 1079
Bsp1286I GDGCHC 3 cut(s) 764, 905, 925
Bsp143I GATC 6 cut(s) 67, 237, 274, 1036, 1062, 1106
BspANI GGCC 1 cut(s) 1079
BspCNI CTCAG 2 cut(s) 610, 776
BspFNI CGCG 2 cut(s) 609, 1019
BspHI TCATGA 1 cut(s) 1109
BspLI GGNNCC 3 cut(s) 361, 539, 540
BspMI ACCTGC 1 cut(s) 284
BspPI GGATC 2 cut(s) 282, 1031
BspQI GCTCTTC 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 1046
BsrFI RCCGGY 4 cut(s) 356, 646, 893, 1079
BssAI RCCGGY 4 cut(s) 356, 646, 893, 1079
BssECI CCNNGG 4 cut(s) 499, 847, 991, 1017
BssMI GATC 6 cut(s) 67, 237, 274, 1036, 1062, 1106
BssNI GRCGYC 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 855
Bst4CI ACNGT 5 cut(s) 26, 440, 583, 635, 961
Bst6I CTCTTC 3 cut(s) 289, 361, 777
BstACI GRCGYC 1 cut(s) 360
BstBAI YACGTR 3 cut(s) 523, 534, 1029
BstC8I GCNNGC 3 cut(s) 358, 752, 949
BstDEI CTNAG 2 cut(s) 597, 763
BstDSI CCRYGG 2 cut(s) 499, 1017
BstFNI CGCG 2 cut(s) 609, 1019
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 6 cut(s) 70, 240, 277, 1039, 1065, 1109
BstMAI GTCTC 2 cut(s) 556, 666
BstMBI GATC 6 cut(s) 67, 237, 274, 1036, 1062, 1106
BstMWI GCNNNNNNNGC 4 cut(s) 262, 368, 615, 1022
BstNI CCWGG 1 cut(s) 855
BstPAI GACNNNNGTC 1 cut(s) 849
BstSCI CCNGG 2 cut(s) 714, 853
BstUI CGCG 2 cut(s) 609, 1019
BstV1I GCAGC 6 cut(s) 178, 358, 532, 588, 1017, 1034
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 1 cut(s) 1079
BtgI CCRYGG 2 cut(s) 499, 1017
BtgZI GCGATG 1 cut(s) 392
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 3 cut(s) 358, 752, 949
CciI TCATGA 1 cut(s) 1109
CfoI GCGC 1 cut(s) 362
Cfr10I RCCGGY 4 cut(s) 356, 646, 893, 1079
Cfr13I GGNCC 4 cut(s) 308, 538, 583, 851
Cfr42I CCGCGG 1 cut(s) 1020
Csp6I GTAC 2 cut(s) 1030, 1083
CspCI CAANNNNNGTGG 2 cut(s) 1015, 1050
CviAII CATG 4 cut(s) 241, 472, 1075, 1110
CviQI GTAC 2 cut(s) 1030, 1083
DdeI CTNAG 2 cut(s) 597, 763
DinI GGCGCC 1 cut(s) 361
DpnI GATC 6 cut(s) 69, 239, 276, 1038, 1064, 1108
DpnII GATC 6 cut(s) 67, 237, 274, 1036, 1062, 1106
EaeI YGGCCR 1 cut(s) 1077
Eam1104I CTCTTC 3 cut(s) 289, 361, 777
EarI CTCTTC 3 cut(s) 289, 361, 777
EciI GGCGGA 5 cut(s) 57, 84, 277, 734, 885
Ecl136II GAGCTC 3 cut(s) 762, 903, 923
Eco24I GRGCYC 3 cut(s) 764, 905, 925
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 4 cut(s) 308, 538, 583, 851
Eco53kI GAGCTC 3 cut(s) 762, 903, 923
Eco72I CACGTG 2 cut(s) 523, 534
EcoICRI GAGCTC 3 cut(s) 762, 903, 923
EcoO109I RGGNCCY 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 853
EcoRV GATATC 1 cut(s) 334
EcoT38I GRGCYC 3 cut(s) 764, 905, 925
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
Esp3I CGTCTC 1 cut(s) 666
FaeI CATG 4 cut(s) 244, 475, 1078, 1113
FaqI GGGAC 1 cut(s) 524
FatI CATG 4 cut(s) 240, 471, 1074, 1109
FriOI GRGCYC 3 cut(s) 764, 905, 925
FspBI CTAG 2 cut(s) 20, 698
GlaI GCGC 1 cut(s) 361
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 1 cut(s) 1079
HapII CCGG 8 cut(s) 73, 339, 357, 363, 647, 716, 894, 1080
HhaI GCGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 4 cut(s) 244, 475, 1078, 1113
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HincII GTYRAC 2 cut(s) 139, 163
HindII GTYRAC 2 cut(s) 139, 163
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 3 cut(s) 388, 445, 934
HpaI GTTAAC 2 cut(s) 139, 163
HpaII CCGG 8 cut(s) 73, 339, 357, 363, 647, 716, 894, 1080
HphI GGTGA 4 cut(s) 62, 623, 736, 908
Hpy166II GTNNAC 3 cut(s) 139, 163, 1085
Hpy188I TCNGA 2 cut(s) 106, 1062
Hpy188III TCNNGA 2 cut(s) 434, 1110
Hpy8I GTNNAC 3 cut(s) 139, 163, 1085
HpyAV CCTTC 2 cut(s) 186, 693
HpyCH4III ACNGT 5 cut(s) 26, 440, 583, 635, 961
HpyCH4IV ACGT 6 cut(s) 135, 159, 522, 533, 882, 1028
HpyCH4V TGCA 1 cut(s) 672
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 368, 615, 1022
HpyF3I CTNAG 2 cut(s) 597, 763
HpySE526I ACGT 6 cut(s) 135, 159, 522, 533, 882, 1028
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 4 cut(s) 244, 475, 1078, 1113
HspAI GCGC 1 cut(s) 360
KasI GGCGCC 1 cut(s) 359
KflI GGGWCCC 1 cut(s) 538
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
KspAI GTTAAC 2 cut(s) 139, 163
KspI CCGCGG 1 cut(s) 1020
Kzo9I GATC 6 cut(s) 67, 237, 274, 1036, 1062, 1106
LguI GCTCTTC 1 cut(s) 361
LmnI GCTCC 4 cut(s) 75, 178, 908, 920
Lsp1109I GCAGC 6 cut(s) 178, 358, 532, 588, 1017, 1034
LweI GCATC 1 cut(s) 259
MaeI CTAG 2 cut(s) 20, 698
MaeII ACGT 6 cut(s) 135, 159, 522, 533, 882, 1028
MaeIII GTNAC 3 cut(s) 53, 818, 955
MalI GATC 6 cut(s) 69, 239, 276, 1038, 1064, 1108
MbiI CCGCTC 1 cut(s) 1046
MboI GATC 6 cut(s) 67, 237, 274, 1036, 1062, 1106
MboII GAAGA 9 cut(s) 77, 171, 276, 378, 466, 782, 791, 794, 966
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 3 cut(s) 764, 905, 925
MluCI AATT 5 cut(s) 326, 572, 640, 709, 1088
Mly113I GGCGCC 1 cut(s) 360
MmeI TCCRAC 3 cut(s) 252, 286, 1079
MreI CGCCGGCG 1 cut(s) 356
MroNI GCCGGC 1 cut(s) 356
MseI TTAA 2 cut(s) 138, 162
MspA1I CMGCKG 5 cut(s) 601, 803, 931, 947, 1019
MspI CCGG 8 cut(s) 73, 339, 357, 363, 647, 716, 894, 1080
MspR9I CCNGG 2 cut(s) 716, 855
MvaI CCWGG 1 cut(s) 855
MvnI CGCG 2 cut(s) 609, 1019
MwoI GCNNNNNNNGC 4 cut(s) 262, 368, 615, 1022
NaeI GCCGGC 1 cut(s) 358
NarI GGCGCC 1 cut(s) 360
NciI CCSGG 1 cut(s) 716
NdeII GATC 6 cut(s) 67, 237, 274, 1036, 1062, 1106
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 4 cut(s) 244, 475, 1078, 1113
NlaIV GGNNCC 3 cut(s) 361, 539, 540
NmuCI GTSAC 1 cut(s) 818
PagI TCATGA 1 cut(s) 1109
PciSI GCTCTTC 1 cut(s) 361
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 3 cut(s) 388, 445, 934
PfoI TCCNGGA 1 cut(s) 853
PluTI GGCGCC 1 cut(s) 363
PmaCI CACGTG 2 cut(s) 523, 534
PmlI CACGTG 2 cut(s) 523, 534
Ppu21I YACGTR 3 cut(s) 523, 534, 1029
PpuMI RGGWCCY 1 cut(s) 538
PshAI GACNNNNGTC 1 cut(s) 849
Psp124BI GAGCTC 3 cut(s) 764, 905, 925
Psp1406I AACGTT 3 cut(s) 135, 159, 882
Psp5II RGGWCCY 1 cut(s) 538
Psp6I CCWGG 1 cut(s) 853
PspCI CACGTG 2 cut(s) 523, 534
PspGI CCWGG 1 cut(s) 853
PspN4I GGNNCC 3 cut(s) 361, 539, 540
PspPI GGNCC 4 cut(s) 308, 538, 583, 851
PspPPI RGGWCCY 1 cut(s) 538
PsuI RGATCY 1 cut(s) 274
PvuII CAGCTG 4 cut(s) 601, 803, 931, 947
RsaI GTAC 2 cut(s) 1031, 1084
RsaNI GTAC 2 cut(s) 1030, 1083
SacI GAGCTC 3 cut(s) 764, 905, 925
SacII CCGCGG 1 cut(s) 1020
SapI GCTCTTC 1 cut(s) 361
SaqAI TTAA 2 cut(s) 138, 162
Sau3AI GATC 6 cut(s) 67, 237, 274, 1036, 1062, 1106
Sau96I GGNCC 4 cut(s) 308, 538, 583, 851
ScrFI CCNGG 2 cut(s) 716, 855
SduI GDGCHC 3 cut(s) 764, 905, 925
SfaNI GCATC 1 cut(s) 259
SfoI GGCGCC 1 cut(s) 361
Sfr303I CCGCGG 1 cut(s) 1020
SgrAI CRCCGGYG 2 cut(s) 356, 893
SgrBI CCGCGG 1 cut(s) 1020
SinI GGWCC 4 cut(s) 308, 538, 583, 851
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 5 cut(s) 326, 572, 640, 709, 1088
SspDI GGCGCC 1 cut(s) 359
SspMI CTAG 2 cut(s) 20, 698
SstI GAGCTC 3 cut(s) 764, 905, 925
StyD4I CCNGG 2 cut(s) 714, 853
TaaI ACNGT 5 cut(s) 26, 440, 583, 635, 961
TaiI ACGT 6 cut(s) 138, 162, 525, 536, 885, 1031
TaqI TCGA 2 cut(s) 330, 507
TaqII GACCGA 1 cut(s) 839
TasI AATT 5 cut(s) 326, 572, 640, 709, 1088
TauI GCSGC 6 cut(s) 293, 377, 893, 1019, 1022, 1046
TfiI GAWTC 3 cut(s) 388, 445, 934
Tru1I TTAA 2 cut(s) 138, 162
Tru9I TTAA 2 cut(s) 138, 162
TseFI GTSAC 1 cut(s) 818
TseI GCWGC 6 cut(s) 191, 371, 545, 601, 1005, 1022
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 3 cut(s) 645, 720, 1063
VpaK11BI GGWCC 4 cut(s) 308, 538, 583, 851
XapI RAATTY 1 cut(s) 640
XspI CTAG 2 cut(s) 20, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.