FvH4_1g12410

Protein SHI RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
6809159 .. 6812001
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12410.t1

Sequence Viewer

Length: 1122 bp
ATGGCTGGTTTTTTCTCATTAGGTGGAGGAAGTCGGAATCCGGAAAGCAGGAATCAGTATCAACAACCGCAACCGAGTGATATTCCGCCGGAGACGTTGTTTTGGTACAAGAATAATGAAGAGGGCATGCCAAACAAAGGAAGCTTCGAGTTATGGCAGCACCAGCAGCAGCAACTACAGCACCACCACCACCAGCAACAGCAGCATCAGCTCCACCAGCTCCAACTCCAGCAAGATCTGTACGCCTCGGCCGCTGCTCTAGGCGTCGGTCCTAGCAGCATCAACGTCTCTGATGAGTCGTCGTCGCGGCCGTTCATGTTGATGAGACCCTCCTCGTCCGGCGGAGGAGGAGGTGGAGGTGGTGGGGGAGGTGGATCGACGTCCGGGAGCACCGTCAGCTGTCAAGACTGCGGCAACCAAGCCAAGAAAGATTGCGTGCACATGAGGTGCAGGACTTGCTGCAAGAGCCGAGGGTTCGAGTGCGCCACCCACGTGAAGAGCACGTGGGTCCCGGCGTCGAAGCGCCGTGAGAGGCAGCAGCAGCATCTCACGGCGCTGCAGCAGCAGCAGCAGCAACAACAACACGAAACAGTTCAAGTGATCCGCGGAGGCGGAGAGAATCCGAAAAGGCTGAGAGAGAGCAATCCAAACAATCCAAGCTCCAATTCTTCTCTGGGAGCTTGCACTCGCATTATCACAAACACGTCAGGGTTGGAACTGGGGAATTTTCCGCCCGAACTGACCTCTCCCGCGTTGTTCCGCTGCGTGAGAGTGAGCTCCATCGACGACGATGAAGATCAGTACGCATATCAGACGGCGGTGAACATCGCCGGCCACGTGTTCAAGGGAATTCTCTACAACCAAGGCCCTGCTGATAATAACAACTACAATATGAGCACAGGTGGCGAGAGCTCGTCTGGGGGAGGAGGCGGAGGCGGAGGTGGTGGAGGAGTCATTCAACCCCTCAATCTCATCAATGCCGCTCCCACTACAGCTGTCAGTGGCGGTGTAACGGTGGCTGCAGCTTCAGGTTCCGGGACGTTAATGGATCCTAACTCTCTATACCCGGCTAACCCATTTATGGCATCGGGTACGCAATTCTTCCTACCACCAAGATCTTGA

Protein Analysis

374

Amino Acids

39.63

Weight (kDa)

7.17

Isoelectric Point (pI)

66.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 131 - 291 1.7e-66 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 383
AccBSI CCGCTC 1 cut(s) 983
AccII CGCG 3 cut(s) 307, 606, 752
AccIII TCCGGA 1 cut(s) 40
AclWI GGATC 4 cut(s) 382, 595, 1043, 1056
AcoI YGGCCR 3 cut(s) 249, 308, 832
AcsI RAATTY 2 cut(s) 724, 849
AcuI CTGAAG 1 cut(s) 1011
AcvI CACGTG 3 cut(s) 493, 504, 838
AcyI GRCGYC 3 cut(s) 264, 380, 515
AfaI GTAC 4 cut(s) 107, 242, 803, 1093
AfiI CCNNNNNNNGG 2 cut(s) 137, 1081
AflIII ACRYGT 2 cut(s) 702, 837
AgsI TTSAA 3 cut(s) 596, 844, 959
AjiI CACGTC 1 cut(s) 705
AjuI GAANNNNNNNTTGG 2 cut(s) 649, 681
AleI CACNNNNGTG 1 cut(s) 491
Alw21I GWGCWC 6 cut(s) 392, 441, 503, 779, 899, 914
Alw26I GTCTC 3 cut(s) 86, 292, 319
Alw44I GTGCAC 1 cut(s) 437
AlwI GGATC 4 cut(s) 382, 595, 1043, 1056
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 4 cut(s) 249, 308, 832, 865
ApaLI GTGCAC 1 cut(s) 437
ApoI RAATTY 2 cut(s) 724, 849
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 3 cut(s) 485, 525, 556
AspS9I GGNCC 3 cut(s) 269, 508, 866
AsuC2I CCSGG 4 cut(s) 385, 512, 1036, 1067
AsuHPI GGTGA 1 cut(s) 832
AvaII GGWCC 2 cut(s) 269, 508
BaeGI GKGCMC 1 cut(s) 441
BamHI GGATCC 1 cut(s) 1048
BanII GRGCYC 2 cut(s) 779, 914
BbrPI CACGTG 3 cut(s) 493, 504, 838
Bbv12I GWGCWC 6 cut(s) 392, 441, 503, 779, 899, 914
BccI CCATC 1 cut(s) 788
BceAI ACGGC 4 cut(s) 295, 510, 567, 831
BcnI CCSGG 4 cut(s) 385, 512, 1036, 1067
BcoDI GTCTC 3 cut(s) 86, 292, 319
BfaI CTAG 2 cut(s) 260, 273
BfmI CTRYAG 4 cut(s) 176, 557, 990, 1020
BfoI RGCGCY 2 cut(s) 526, 557
BglII AGATCT 2 cut(s) 235, 1115
Bme1390I CCNGG 4 cut(s) 385, 512, 1036, 1067
Bme18I GGWCC 2 cut(s) 269, 508
BmgBI CACGTC 1 cut(s) 705
BmgT120I GGNCC 3 cut(s) 269, 508, 866
BmiI GGNNCC 4 cut(s) 509, 510, 1033, 1050
BmrFI CCNGG 4 cut(s) 385, 512, 1036, 1067
BmrI ACTGGG 1 cut(s) 728
BmsI GCATC 4 cut(s) 214, 288, 553, 1094
BmuI ACTGGG 1 cut(s) 728
BpmI CTGGAG 1 cut(s) 212
BpuMI CCSGG 4 cut(s) 385, 512, 1036, 1067
BsaAI YACGTR 3 cut(s) 493, 504, 838
BsaBI GATNNNNATC 1 cut(s) 795
BsaHI GRCGYC 3 cut(s) 264, 380, 515
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 4 cut(s) 246, 469, 604, 862
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 1081
Bse118I RCCGGY 1 cut(s) 830
Bse1I ACTGG 1 cut(s) 723
Bse8I GATNNNNATC 1 cut(s) 795
BseAI TCCGGA 1 cut(s) 40
BseDI CCNNGG 4 cut(s) 246, 469, 604, 862
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 2 cut(s) 137, 1081
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 1 cut(s) 723
BseRI GAGGAG 5 cut(s) 322, 360, 363, 939, 963
BseSI GKGCMC 1 cut(s) 441
BseX3I CGGCCG 2 cut(s) 249, 308
BsgI GTGCAG 1 cut(s) 469
Bsh1236I CGCG 3 cut(s) 307, 606, 752
Bsh1285I CGRYCG 2 cut(s) 252, 311
BshFI GGCC 4 cut(s) 251, 310, 834, 867
BsiEI CGRYCG 2 cut(s) 252, 311
BsiHKAI GWGCWC 6 cut(s) 392, 441, 503, 779, 899, 914
BsiSI CCGG 8 cut(s) 41, 89, 339, 384, 512, 831, 1035, 1067
BslFI GGGAC 2 cut(s) 494, 1051
BslI CCNNNNNNNGG 2 cut(s) 137, 1081
BsmAI GTCTC 3 cut(s) 86, 292, 319
BsmBI CGTCTC 2 cut(s) 86, 292
BsmFI GGGAC 2 cut(s) 494, 1051
BsnI GGCC 4 cut(s) 251, 310, 834, 867
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 6 cut(s) 392, 441, 503, 779, 899, 914
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 6 cut(s) 235, 374, 600, 796, 1048, 1115
BspANI GGCC 4 cut(s) 251, 310, 834, 867
BspCNI CTCAG 1 cut(s) 624
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 3 cut(s) 307, 606, 752
BspLI GGNNCC 4 cut(s) 509, 510, 1033, 1050
BspMAI CTGCAG 2 cut(s) 561, 1024
BspPI GGATC 4 cut(s) 382, 595, 1043, 1056
BspQI GCTCTTC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 319
BsrBI CCGCTC 1 cut(s) 983
BsrFI RCCGGY 1 cut(s) 830
BsrI ACTGG 1 cut(s) 723
BssAI RCCGGY 1 cut(s) 830
BssECI CCNNGG 4 cut(s) 246, 469, 604, 862
BssMI GATC 6 cut(s) 235, 374, 600, 796, 1048, 1115
BssNI GRCGYC 3 cut(s) 264, 380, 515
BssT1I CCWWGG 1 cut(s) 862
Bst4CI ACNGT 3 cut(s) 394, 592, 1015
Bst6I CTCTTC 2 cut(s) 114, 491
BstACI GRCGYC 3 cut(s) 264, 380, 515
BstAPI GCANNNNNTGC 1 cut(s) 456
BstBAI YACGTR 3 cut(s) 493, 504, 838
BstC8I GCNNGC 4 cut(s) 128, 437, 682, 832
BstDEI CTNAG 1 cut(s) 632
BstDSI CCRYGG 1 cut(s) 604
BstFNI CGCG 3 cut(s) 307, 606, 752
BstH2I RGCGCY 2 cut(s) 526, 557
BstHHI GCGC 3 cut(s) 485, 525, 556
BstKTI GATC 6 cut(s) 238, 377, 603, 799, 1051, 1118
BstMAI GTCTC 3 cut(s) 86, 292, 319
BstMBI GATC 6 cut(s) 235, 374, 600, 796, 1048, 1115
BstMCI CGRYCG 2 cut(s) 252, 311
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 4 cut(s) 383, 510, 1034, 1065
BstSFI CTRYAG 4 cut(s) 176, 557, 990, 1020
BstSLI GKGCMC 1 cut(s) 441
BstUI CGCG 3 cut(s) 307, 606, 752
BstX2I RGATCY 3 cut(s) 235, 1048, 1115
BstYI RGATCY 3 cut(s) 235, 1048, 1115
BstZI CGGCCG 2 cut(s) 249, 308
BsuRI GGCC 4 cut(s) 251, 310, 834, 867
BtgI CCRYGG 1 cut(s) 604
BtgZI GCGATG 1 cut(s) 811
BtrI CACGTC 1 cut(s) 705
BtsIMutI CAGTG 1 cut(s) 1006
Cac8I GCNNGC 4 cut(s) 128, 437, 682, 832
CfoI GCGC 3 cut(s) 485, 525, 556
Cfr10I RCCGGY 1 cut(s) 830
Cfr13I GGNCC 3 cut(s) 269, 508, 866
Cfr42I CCGCGG 1 cut(s) 607
CseI GACGC 2 cut(s) 253, 504
Csp6I GTAC 4 cut(s) 106, 241, 802, 1092
CviAII CATG 3 cut(s) 127, 316, 442
CviQI GTAC 4 cut(s) 106, 241, 802, 1092
DdeI CTNAG 1 cut(s) 632
DpnI GATC 6 cut(s) 237, 376, 602, 798, 1050, 1117
DpnII GATC 6 cut(s) 235, 374, 600, 796, 1048, 1115
EaeI YGGCCR 3 cut(s) 249, 308, 832
EagI CGGCCG 2 cut(s) 249, 308
Eam1104I CTCTTC 2 cut(s) 114, 491
EarI CTCTTC 2 cut(s) 114, 491
EciI GGCGGA 6 cut(s) 75, 357, 627, 720, 945, 951
Ecl136II GAGCTC 2 cut(s) 777, 912
EclXI CGGCCG 2 cut(s) 249, 308
Eco130I CCWWGG 1 cut(s) 862
Eco24I GRGCYC 2 cut(s) 779, 914
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 269, 508
Eco52I CGGCCG 2 cut(s) 249, 308
Eco53kI GAGCTC 2 cut(s) 777, 912
Eco57I CTGAAG 1 cut(s) 1011
Eco72I CACGTG 3 cut(s) 493, 504, 838
EcoICRI GAGCTC 2 cut(s) 777, 912
EcoO109I RGGNCCY 2 cut(s) 508, 866
EcoRI GAATTC 1 cut(s) 849
EcoT14I CCWWGG 1 cut(s) 862
EcoT38I GRGCYC 2 cut(s) 779, 914
ErhI CCWWGG 1 cut(s) 862
Esp3I CGTCTC 2 cut(s) 86, 292
FaeI CATG 3 cut(s) 130, 319, 445
FaiI YATR 8 cut(s) 128, 154, 317, 443, 808, 893, 1063, 1082
FaqI GGGAC 2 cut(s) 494, 1051
FatI CATG 3 cut(s) 126, 315, 441
FauI CCCGC 1 cut(s) 757
FriOI GRGCYC 2 cut(s) 779, 914
FspBI CTAG 2 cut(s) 260, 273
GlaI GCGC 3 cut(s) 484, 524, 555
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 2 cut(s) 526, 557
HaeIII GGCC 4 cut(s) 251, 310, 834, 867
HapII CCGG 8 cut(s) 41, 89, 339, 384, 512, 831, 1035, 1067
HgaI GACGC 2 cut(s) 253, 504
HhaI GCGC 3 cut(s) 485, 525, 556
Hin1I GRCGYC 3 cut(s) 264, 380, 515
Hin1II CATG 3 cut(s) 130, 319, 445
Hin6I GCGC 3 cut(s) 483, 523, 554
HinP1I GCGC 3 cut(s) 483, 523, 554
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 5 cut(s) 37, 52, 296, 619, 951
HpaII CCGG 8 cut(s) 41, 89, 339, 384, 512, 831, 1035, 1067
HphI GGTGA 1 cut(s) 832
Hpy166II GTNNAC 2 cut(s) 439, 823
Hpy188I TCNGA 4 cut(s) 36, 292, 624, 813
Hpy188III TCNNGA 3 cut(s) 41, 404, 1119
Hpy8I GTNNAC 2 cut(s) 439, 823
Hpy99I CGWCG 7 cut(s) 269, 304, 307, 382, 520, 788, 791
HpyCH4III ACNGT 3 cut(s) 394, 592, 1015
HpyCH4IV ACGT 8 cut(s) 95, 285, 380, 492, 503, 704, 837, 1040
HpyCH4V TGCA 6 cut(s) 439, 450, 462, 559, 684, 1022
HpyF3I CTNAG 1 cut(s) 632
HpySE526I ACGT 8 cut(s) 95, 285, 380, 492, 503, 704, 837, 1040
Hsp92I GRCGYC 3 cut(s) 264, 380, 515
Hsp92II CATG 3 cut(s) 130, 319, 445
HspAI GCGC 3 cut(s) 483, 523, 554
KflI GGGWCCC 1 cut(s) 508
Kpn2I TCCGGA 1 cut(s) 40
KroI GCCGGC 1 cut(s) 830
KroNI GCCGGC 1 cut(s) 832
KspI CCGCGG 1 cut(s) 607
Kzo9I GATC 6 cut(s) 235, 374, 600, 796, 1048, 1115
LguI GCTCTTC 1 cut(s) 491
LmnI GCTCC 7 cut(s) 216, 225, 387, 665, 677, 782, 988
LweI GCATC 4 cut(s) 214, 288, 553, 1094
MaeI CTAG 2 cut(s) 260, 273
MaeII ACGT 8 cut(s) 95, 285, 380, 492, 503, 704, 837, 1040
MaeIII GTNAC 1 cut(s) 1009
MalI GATC 6 cut(s) 237, 376, 602, 798, 1050, 1117
MbiI CCGCTC 1 cut(s) 983
MboI GATC 6 cut(s) 235, 374, 600, 796, 1048, 1115
MboII GAAGA 5 cut(s) 131, 508, 660, 806, 1093
MflI RGATCY 3 cut(s) 235, 1048, 1115
MhlI GDGCHC 6 cut(s) 392, 441, 503, 779, 899, 914
MluCI AATT 4 cut(s) 664, 724, 849, 1097
MlyI GAGTC 2 cut(s) 305, 960
MmeI TCCRAC 3 cut(s) 14, 247, 693
MroI TCCGGA 1 cut(s) 40
MroNI GCCGGC 1 cut(s) 830
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 1 cut(s) 1043
MslI CAYNNNNRTG 2 cut(s) 320, 491
MspA1I CMGCKG 5 cut(s) 254, 399, 606, 762, 995
MspI CCGG 8 cut(s) 41, 89, 339, 384, 512, 831, 1035, 1067
MspR9I CCNGG 4 cut(s) 385, 512, 1036, 1067
MvnI CGCG 3 cut(s) 307, 606, 752
NaeI GCCGGC 1 cut(s) 832
NciI CCSGG 4 cut(s) 385, 512, 1036, 1067
NdeII GATC 6 cut(s) 235, 374, 600, 796, 1048, 1115
NgoMIV GCCGGC 1 cut(s) 830
NlaIII CATG 3 cut(s) 130, 319, 445
NlaIV GGNNCC 4 cut(s) 509, 510, 1033, 1050
NmeAIII GCCGAG 2 cut(s) 227, 494
NspI RCATGY 1 cut(s) 130
OliI CACNNNNGTG 1 cut(s) 491
PaeI GCATGC 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 491
PcsI WCGNNNNNNNCGW 2 cut(s) 308, 834
PdiI GCCGGC 1 cut(s) 832
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 3 cut(s) 37, 52, 619
PfoI TCCNGGA 2 cut(s) 383, 1034
PleI GAGTC 2 cut(s) 304, 959
PmaCI CACGTG 3 cut(s) 493, 504, 838
PmlI CACGTG 3 cut(s) 493, 504, 838
PpsI GAGTC 2 cut(s) 304, 959
Ppu21I YACGTR 3 cut(s) 493, 504, 838
PpuMI RGGWCCY 1 cut(s) 508
Psp124BI GAGCTC 2 cut(s) 779, 914
Psp5II RGGWCCY 1 cut(s) 508
PspCI CACGTG 3 cut(s) 493, 504, 838
PspN4I GGNNCC 4 cut(s) 509, 510, 1033, 1050
PspPI GGNCC 3 cut(s) 269, 508, 866
PspPPI RGGWCCY 1 cut(s) 508
PstI CTGCAG 2 cut(s) 561, 1024
PsuI RGATCY 3 cut(s) 235, 1048, 1115
PvuII CAGCTG 2 cut(s) 399, 995
RsaI GTAC 4 cut(s) 107, 242, 803, 1093
RsaNI GTAC 4 cut(s) 106, 241, 802, 1092
RseI CAYNNNNRTG 2 cut(s) 320, 491
SacI GAGCTC 2 cut(s) 779, 914
SacII CCGCGG 1 cut(s) 607
SapI GCTCTTC 1 cut(s) 491
SaqAI TTAA 1 cut(s) 1043
Sau3AI GATC 6 cut(s) 235, 374, 600, 796, 1048, 1115
Sau96I GGNCC 3 cut(s) 269, 508, 866
SchI GAGTC 2 cut(s) 305, 960
ScrFI CCNGG 4 cut(s) 385, 512, 1036, 1067
SduI GDGCHC 6 cut(s) 392, 441, 503, 779, 899, 914
SfaNI GCATC 4 cut(s) 214, 288, 553, 1094
SfcI CTRYAG 4 cut(s) 176, 557, 990, 1020
Sfr303I CCGCGG 1 cut(s) 607
SgrBI CCGCGG 1 cut(s) 607
SinI GGWCC 2 cut(s) 269, 508
SmiMI CAYNNNNRTG 2 cut(s) 320, 491
SphI GCATGC 1 cut(s) 130
Sse9I AATT 4 cut(s) 664, 724, 849, 1097
SspMI CTAG 2 cut(s) 260, 273
SstI GAGCTC 2 cut(s) 779, 914
StyD4I CCNGG 4 cut(s) 383, 510, 1034, 1065
StyI CCWWGG 1 cut(s) 862
TaaI ACNGT 3 cut(s) 394, 592, 1015
TaiI ACGT 8 cut(s) 98, 288, 383, 495, 506, 707, 840, 1043
TaqI TCGA 5 cut(s) 147, 377, 477, 518, 783
TaqII GACCGA 1 cut(s) 257
TasI AATT 4 cut(s) 664, 724, 849, 1097
TauI GCSGC 4 cut(s) 254, 310, 414, 983
TfiI GAWTC 3 cut(s) 37, 52, 619
Tru1I TTAA 1 cut(s) 1043
Tru9I TTAA 1 cut(s) 1043
TscAI CASTG 1 cut(s) 1006
TspDTI ATGAA 3 cut(s) 132, 304, 807
TspRI CASTG 1 cut(s) 1006
VneI GTGCAC 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 269, 508
XapI RAATTY 2 cut(s) 724, 849
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 2 cut(s) 260, 273
ZraI GACGTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.