Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009050

Physical Location & Seq

Genomic Coordinates Forward (+)

21081818 .. 21084474

Gene Structure 2657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1250700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCTGGTTTTTTCTCATTAGGCAGAGGCGGCAGCGACGACCAACATAACAGCAACAACCCGCCGCCGCCTGATCACCACCACCGCCATCAAATTGCTCCGGAGACGTTGTTCTGGTACAAAAATGAGGACGTGGCAAACCAGCCGTACAAGGGCTTCGAGCTGTGGCAGCAACAGGAGCAGCTCCTTCAGCTCCAAACCCAGCCGTCGCAGCGGCTCTACCAGCCTCATCCCCACCACCATCAAGATCTCTACGCTTCTGCGGCTGCTCTAGGGGTGGGTCCCAGCAGCAGGGGATCGGATGACACTTCATCGTCGAGGTCGGCCGCAGCGGCGTTTACGACGATGAGGTCGTCGTCAGGAGGAGGAAGCGGAGGAGTCGCCAGCTGTCAAGACTGCGGGAACCAAGCGAAGAAAGACTGCATACACATGAGGTGCAGGACTTGCTGCAAGAGCCGAGGGTTCGACTGTCCGACCCATGTCAAGAGCACGTGGGTCCCGGCGTCGAAACGTCGTGAGCGGCAGCAGCAACACCATCACCAACAGCAAGATCATATGCAACACCACCATCACCAACAACAGCAGCAGTTTCAAGTGATTCGAGGAGAAAATTCGAAAAGACTGAGAGAAAATCCGAGCTCGAAACCCTCTCGTCGTATTCTCACAAACACAAACACTTCAGAGTTGGATGTGGTGAATTTCCCGCCGGAAGTGAGCTCGCCGGCGGTATTTCGCTGCGTGAAAGTGAGCGCAATCGACGAGGAGGATCAGTACGCGTACCAGACGGCTGTGAACATCGCAGGCCATTTGTTCAAAGGAATTCTTTACGACCAAGGACCCGAATCCCCTAACTACAATATGAACATGGCAGCTGAAACCTCGTCTGCTGGTGGAGTTAATTTCCAACCGCTCAATCTCGTCGTGGGAGCCACCACCGCCGTTAACACAGCTTCCATTGACGGTGGTGGAGGCCATGAGGGAGTGGCAGTGGCGGGTTCGACGATTGTTATAGATCCTTCTTCTCTATACCCAGCTCCAATTAACACATACATGGGTACGCAATTCTTCCTACCACCAAGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

362

Amino Acids

39.68

Weight (kDa)

7.06

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF702	PF05142	128 - 281	9.5e-64	Domain of unknown function (DUF702)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51060 AT5G66350 AT5G66350 AT5G66350
fragaria_vesca	FvH4_1g12410
malus_domestica	MD02G1137000.v1.1 MD15G1250700.v1.1
prunus_persica	Prupe.7G163600_v2.0.a1 Prupe.7G163600_v2.0.a1 Prupe.7G163600_v2.0.a1
pyrus_communis	pycom02g10840 pycom15g22110
rosa_chinensis	RchiOBHm_Chr2g0100271
rosa_laevigata	RLG00000016951
rosa_multiflora	Rmu_sc0002547.1_g000016
rosa_roxburghii	Rroxscaffold_2G00142430
rosa_rugosa	Rorug02G0087000
rosa_samantha	Rh2AG136000 Rh2BG139600 Rh2CG141300 Rh2DG141500
rosa_wichuraiana	Rw2G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
AccBSI	CCGCTC	2 cut(s)	520, 910
AccII	CGCG	1 cut(s)	776
AccIII	TCCGGA	1 cut(s)	100
AclWI	GGATC	3 cut(s)	304, 774, 1007
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	3 cut(s)	610, 697, 819
AcuI	CTGAAG	2 cut(s)	173, 663
AcvI	CACGTG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	503
AfaI	GTAC	5 cut(s)	119, 149, 773, 779, 1057
AfiI	CCNNNNNNNGG	2 cut(s)	152, 291
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	2 cut(s)	593, 814
AjiI	CACGTC	1 cut(s)	133
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	9 cut(s)	163, 184, 193, 387, 639, 717, 872, 950, 1034
AluI	AGCT	9 cut(s)	163, 184, 193, 387, 639, 717, 872, 950, 1034
Alw21I	GWGCWC	3 cut(s)	491, 641, 719
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	3 cut(s)	304, 774, 1007
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	3 cut(s)	324, 802, 970
ApoI	RAATTY	3 cut(s)	610, 697, 819
AspLEI	GCGC	1 cut(s)	752
AspS9I	GGNCC	3 cut(s)	281, 496, 836
AsuC2I	CCSGG	1 cut(s)	500
AsuHPI	GGTGA	4 cut(s)	68, 530, 563, 706
AsuII	TTCGAA	1 cut(s)	614
AvaII	GGWCC	3 cut(s)	281, 496, 836
BanII	GRGCYC	2 cut(s)	641, 719
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
BbrPI	CACGTG	1 cut(s)	492
Bbv12I	GWGCWC	3 cut(s)	491, 641, 719
BccI	CCATC	4 cut(s)	96, 249, 543, 576
BceAI	ACGGC	4 cut(s)	130, 190, 801, 923
BclI	TGATCA	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	500
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	332
BglII	AGATCT	2 cut(s)	247, 1079
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	3 cut(s)	281, 496, 836
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	3 cut(s)	281, 496, 836
BmiI	GGNNCC	7 cut(s)	282, 283, 404, 497, 498, 838, 928
BmrFI	CCNGG	1 cut(s)	500
BoxI	GACNNNNGTC	1 cut(s)	479
Bpu14I	TTCGAA	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	457, 832
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 755, 785, 972, 1002
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 291
Bse118I	RCCGGY	1 cut(s)	721
BseAI	TCCGGA	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	457, 832
BseGI	GGATG	3 cut(s)	229, 307, 694
BseLI	CCNNNNNNNGG	2 cut(s)	152, 291
BseMII	CTCAG	1 cut(s)	614
BseRI	GAGGAG	4 cut(s)	378, 390, 618, 776
BseX3I	CGGCCG	1 cut(s)	324
BseYI	CCCAGC	3 cut(s)	201, 284, 1030
BsgI	GTGCAG	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	776
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	3 cut(s)	326, 804, 972
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	3 cut(s)	491, 641, 719
BsiSI	CCGG	4 cut(s)	101, 500, 707, 722
BslFI	GGGAC	2 cut(s)	267, 482
BslI	CCNNNNNNNGG	2 cut(s)	152, 291
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	2 cut(s)	267, 482
BsnI	GGCC	3 cut(s)	326, 804, 972
Bsp119I	TTCGAA	1 cut(s)	614
Bsp1286I	GDGCHC	3 cut(s)	491, 641, 719
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	7 cut(s)	73, 247, 296, 550, 766, 1012, 1079
BspANI	GGCC	3 cut(s)	326, 804, 972
BspCNI	CTCAG	1 cut(s)	615
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	776
BspLI	GGNNCC	7 cut(s)	282, 283, 404, 497, 498, 838, 928
BspPI	GGATC	3 cut(s)	304, 774, 1007
BspT104I	TTCGAA	1 cut(s)	614
BsrBI	CCGCTC	2 cut(s)	520, 910
BsrFI	RCCGGY	1 cut(s)	721
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	2 cut(s)	457, 832
BssMI	GATC	7 cut(s)	73, 247, 296, 550, 766, 1012, 1079
BssNI	GRCGYC	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	832
Bst4CI	ACNGT	2 cut(s)	470, 962
BstACI	GRCGYC	1 cut(s)	503
BstAPI	GCANNNNNTGC	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	492
BstBI	TTCGAA	1 cut(s)	614
BstC8I	GCNNGC	4 cut(s)	385, 719, 723, 802
BstDEI	CTNAG	1 cut(s)	623
BstF5I	GGATG	3 cut(s)	229, 307, 694
BstFNI	CGCG	1 cut(s)	776
BstHHI	GCGC	1 cut(s)	752
BstKTI	GATC	7 cut(s)	76, 250, 299, 553, 769, 1015, 1082
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	7 cut(s)	73, 247, 296, 550, 766, 1012, 1079
BstMCI	CGRYCG	1 cut(s)	327
BstPAI	GACNNNNGTC	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	776
BstX2I	RGATCY	3 cut(s)	247, 1012, 1079
BstYI	RGATCY	3 cut(s)	247, 1012, 1079
BstZI	CGGCCG	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	326, 804, 972
BtgZI	GCGATG	1 cut(s)	781
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	229, 307, 694
BtsI	GCAGTG	1 cut(s)	993
BtsIMutI	CAGTG	1 cut(s)	993
Cac8I	GCNNGC	4 cut(s)	385, 719, 723, 802
CfoI	GCGC	1 cut(s)	752
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	3 cut(s)	281, 496, 836
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	5 cut(s)	118, 148, 772, 778, 1056
CviAII	CATG	5 cut(s)	430, 479, 865, 974, 1051
CviQI	GTAC	5 cut(s)	118, 148, 772, 778, 1056
DdeI	CTNAG	1 cut(s)	623
DpnI	GATC	7 cut(s)	75, 249, 298, 552, 768, 1014, 1081
DpnII	GATC	7 cut(s)	73, 247, 296, 550, 766, 1012, 1079
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	324
EagI	CGGCCG	1 cut(s)	324
Ecl136II	GAGCTC	2 cut(s)	639, 717
EclXI	CGGCCG	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	832
Eco24I	GRGCYC	2 cut(s)	641, 719
Eco47I	GGWCC	3 cut(s)	281, 496, 836
Eco52I	CGGCCG	1 cut(s)	324
Eco53kI	GAGCTC	2 cut(s)	639, 717
Eco57I	CTGAAG	2 cut(s)	173, 663
Eco72I	CACGTG	1 cut(s)	492
EcoICRI	GAGCTC	2 cut(s)	639, 717
EcoO109I	RGGNCCY	3 cut(s)	281, 496, 836
EcoRI	GAATTC	1 cut(s)	819
EcoT14I	CCWWGG	1 cut(s)	832
EcoT38I	GRGCYC	2 cut(s)	641, 719
ErhI	CCWWGG	1 cut(s)	832
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	5 cut(s)	433, 482, 868, 977, 1054
FalI	AAGNNNNNCTT	2 cut(s)	807, 839
FaqI	GGGAC	2 cut(s)	267, 482
FatI	CATG	5 cut(s)	429, 478, 864, 973, 1050
FauI	CCCGC	4 cut(s)	69, 392, 711, 985
FauNDI	CATATG	1 cut(s)	555
FbaI	TGATCA	1 cut(s)	73
FokI	GGATG	3 cut(s)	216, 314, 701
FriOI	GRGCYC	2 cut(s)	641, 719
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	751
GsaI	CCCAGC	3 cut(s)	205, 288, 1034
HaeIII	GGCC	3 cut(s)	326, 804, 972
HapII	CCGG	4 cut(s)	101, 500, 707, 722
HgaI	GACGC	1 cut(s)	492
HhaI	GCGC	1 cut(s)	752
Hin1I	GRCGYC	1 cut(s)	503
Hin1II	CATG	5 cut(s)	433, 482, 868, 977, 1054
Hin6I	GCGC	1 cut(s)	750
HinP1I	GCGC	1 cut(s)	750
HincII	GTYRAC	1 cut(s)	943
HindII	GTYRAC	1 cut(s)	943
HinfI	GANTC	3 cut(s)	378, 598, 842
HpaI	GTTAAC	1 cut(s)	943
HpaII	CCGG	4 cut(s)	101, 500, 707, 722
HphI	GGTGA	4 cut(s)	68, 530, 563, 706
Hpy166II	GTNNAC	3 cut(s)	339, 793, 943
Hpy188I	TCNGA	4 cut(s)	301, 474, 636, 682
Hpy188III	TCNNGA	7 cut(s)	101, 245, 360, 392, 484, 515, 1083
Hpy8I	GTNNAC	3 cut(s)	339, 793, 943
HpyAV	CCTTC	2 cut(s)	197, 1026
HpyCH4III	ACNGT	2 cut(s)	470, 962
HpyCH4IV	ACGT	4 cut(s)	107, 132, 491, 511
HpyCH4V	TGCA	4 cut(s)	423, 438, 450, 559
HpyF3I	CTNAG	1 cut(s)	623
HpySE526I	ACGT	4 cut(s)	107, 132, 491, 511
Hsp92I	GRCGYC	1 cut(s)	503
Hsp92II	CATG	5 cut(s)	433, 482, 868, 977, 1054
HspAI	GCGC	1 cut(s)	750
KflI	GGGWCCC	2 cut(s)	281, 496
Kpn2I	TCCGGA	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	721
KroNI	GCCGGC	1 cut(s)	723
Ksp22I	TGATCA	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	943
Kzo9I	GATC	7 cut(s)	73, 247, 296, 550, 766, 1012, 1079
LmnI	GCTCC	6 cut(s)	103, 178, 189, 198, 926, 1039
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	4 cut(s)	107, 132, 491, 511
MalI	GATC	7 cut(s)	75, 249, 298, 552, 768, 1014, 1081
MbiI	CCGCTC	2 cut(s)	520, 910
MboI	GATC	7 cut(s)	73, 247, 296, 550, 766, 1012, 1079
MboII	GAAGA	3 cut(s)	424, 1011, 1057
MflI	RGATCY	3 cut(s)	247, 1012, 1079
MhlI	GDGCHC	3 cut(s)	491, 641, 719
MluCI	AATT	7 cut(s)	93, 610, 697, 819, 898, 1038, 1061
MluI	ACGCGT	1 cut(s)	774
MlyI	GAGTC	1 cut(s)	387
MmeI	TCCRAC	3 cut(s)	497, 666, 928
MreI	CGCCGGCG	1 cut(s)	721
MroI	TCCGGA	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	721
MseI	TTAA	3 cut(s)	897, 942, 1041
MslI	CAYNNNNRTG	2 cut(s)	428, 1049
MspA1I	CMGCKG	4 cut(s)	214, 332, 387, 872
MspI	CCGG	4 cut(s)	101, 500, 707, 722
MspR9I	CCNGG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	776
NaeI	GCCGGC	1 cut(s)	723
NciI	CCSGG	1 cut(s)	500
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	7 cut(s)	73, 247, 296, 550, 766, 1012, 1079
NgoMIV	GCCGGC	1 cut(s)	721
NlaIII	CATG	5 cut(s)	433, 482, 868, 977, 1054
NlaIV	GGNNCC	7 cut(s)	282, 283, 404, 497, 498, 838, 928
NmeAIII	GCCGAG	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	1 cut(s)	350
PdiI	GCCGGC	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	598, 842
PleI	GAGTC	1 cut(s)	386
PmaCI	CACGTG	1 cut(s)	492
PmlI	CACGTG	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	386
Ppu21I	YACGTR	1 cut(s)	492
PpuMI	RGGWCCY	3 cut(s)	281, 496, 836
PshAI	GACNNNNGTC	1 cut(s)	479
Psp124BI	GAGCTC	2 cut(s)	641, 719
Psp5II	RGGWCCY	3 cut(s)	281, 496, 836
PspCI	CACGTG	1 cut(s)	492
PspFI	CCCAGC	3 cut(s)	201, 284, 1030
PspN4I	GGNNCC	7 cut(s)	282, 283, 404, 497, 498, 838, 928
PspPI	GGNCC	3 cut(s)	281, 496, 836
PspPPI	RGGWCCY	3 cut(s)	281, 496, 836
PsuI	RGATCY	3 cut(s)	247, 1012, 1079
PvuII	CAGCTG	2 cut(s)	387, 872
RsaI	GTAC	5 cut(s)	119, 149, 773, 779, 1057
RsaNI	GTAC	5 cut(s)	118, 148, 772, 778, 1056
RseI	CAYNNNNRTG	2 cut(s)	428, 1049
SacI	GAGCTC	2 cut(s)	641, 719
SaqAI	TTAA	3 cut(s)	897, 942, 1041
Sau3AI	GATC	7 cut(s)	73, 247, 296, 550, 766, 1012, 1079
Sau96I	GGNCC	3 cut(s)	281, 496, 836
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	3 cut(s)	491, 641, 719
SfuI	TTCGAA	1 cut(s)	614
SgrAI	CRCCGGYG	1 cut(s)	721
SinI	GGWCC	3 cut(s)	281, 496, 836
SmiMI	CAYNNNNRTG	2 cut(s)	428, 1049
Sse9I	AATT	7 cut(s)	93, 610, 697, 819, 898, 1038, 1061
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	2 cut(s)	641, 719
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	832
TaaI	ACNGT	2 cut(s)	470, 962
TaiI	ACGT	4 cut(s)	110, 135, 494, 514
TaqI	TCGA	9 cut(s)	159, 317, 465, 506, 601, 614, 641, 756, 998
TasI	AATT	7 cut(s)	93, 610, 697, 819, 898, 1038, 1061
TauI	GCSGC	8 cut(s)	33, 67, 70, 217, 266, 329, 335, 523
TfiI	GAWTC	2 cut(s)	598, 842
Tru1I	TTAA	3 cut(s)	897, 942, 1041
Tru9I	TTAA	3 cut(s)	897, 942, 1041
TscAI	CASTG	1 cut(s)	993
TspDTI	ATGAA	2 cut(s)	300, 875
TspRI	CASTG	1 cut(s)	993
VpaK11BI	GGWCC	3 cut(s)	281, 496, 836
XapI	RAATTY	3 cut(s)	610, 697, 819
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.