Rmu_sc0002547.1_g000016

Protein SHI RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002547.1
Physical Location & Seq
Reverse (-)
72560 .. 74265
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002547.1_g000016.1.cds

Sequence Viewer

Length: 1131 bp
atggctggatttttgtcattaggcggaggaggaggaggaggaggaggaggtcggagcagtcacaacccagaaagccggaatcagaatcaaccggaatcaagtgaaattccgccagagacgttgttttggtacaagaatgaagagggcatgccgttcaaaggaagcttcgagctatggcagcaccagcagcagcaactccagcatcaccagcagcagcagcaccagctccagcagctccagctccagcaagatctgtacgcctccgcagccgctctaggcgtcggtcccagcagcatcaacgtctccgatgagtcgtcctcgcggcccttcatgatgatgaggccctcctcgtccggcggtggaggaggtggaggtggatcgacgtccgggagcacggtcagctgtcaagactgcggcaaccaagccaagaaagattgcgtgcacatgcggtgcaggacgtgctgcaagagccgagggttcgactgcgcgacccacgtgaagagcacgtgggttccggcgtcgaaacgccgggagaggcagcagcagcaactcacggcgctgcagcaacagcaacagcaacacactcaacaagaagttcaagtgatccgcggaggcggagagaatccgaagaggctgagagagagtagtaacaacaatccgaataatccgagctccaattcttctctgggcgcctgcactcgcattatcacaaacacgtcagggttggaagtggggaattttccagcagaagtgacttctcccgctgtgtttcgctgcgtgagagtaagctccatagacgatgacgaagatcagtacgcatatcagacggctgtgaacatcgccggccacgtgttcaagggaattctctacaaccaaggccccgatactaactataatatgagtacagctggtgagagctcgtctggtggtggaggagggggaggcggaggtggtggaggcgtcattcaacccctcaatctcatcaatgcggcgcccacgacagttggcagtggcggtgtaacagtggcagccgcttcaggttctgggacgttaatggatcctaattctctatacccggttaacccattcatggcttcgggtacgcaattcttcctaccaccaagatcttga

Protein Analysis

376

Amino Acids

39.59

Weight (kDa)

6.75

Isoelectric Point (pI)

66.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 386
AccB1I GGYRCC 2 cut(s) 689, 991
AccBSI CCGCTC 1 cut(s) 272
AccII CGCG 3 cut(s) 322, 488, 609
AclWI GGATC 4 cut(s) 385, 598, 1052, 1065
AcoI YGGCCR 1 cut(s) 844
AcsI RAATTY 3 cut(s) 105, 736, 861
AcuI CTGAAG 1 cut(s) 1020
AcvI CACGTG 3 cut(s) 496, 507, 850
AcyI GRCGYC 6 cut(s) 279, 383, 518, 690, 960, 992
AfaI GTAC 5 cut(s) 131, 257, 815, 904, 1102
AfiI CCNNNNNNNGG 2 cut(s) 158, 1090
AflIII ACRYGT 2 cut(s) 714, 849
AgsI TTSAA 4 cut(s) 157, 599, 856, 968
AjiI CACGTC 2 cut(s) 459, 717
Alw21I GWGCWC 5 cut(s) 395, 444, 506, 674, 920
Alw26I GTCTC 2 cut(s) 110, 307
Alw44I GTGCAC 1 cut(s) 440
AlwI GGATC 4 cut(s) 385, 598, 1052, 1065
AlwNI CAGNNNCTG 1 cut(s) 1043
AoxI GGCC 4 cut(s) 323, 341, 844, 877
ApaLI GTGCAC 1 cut(s) 440
ApoI RAATTY 3 cut(s) 105, 736, 861
AspLEI GCGC 4 cut(s) 488, 559, 692, 994
AspS9I GGNCC 4 cut(s) 284, 324, 342, 878
AsuC2I CCSGG 3 cut(s) 388, 530, 1076
AsuHPI GGTGA 2 cut(s) 197, 923
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 444
BamHI GGATCC 1 cut(s) 1057
BanI GGYRCC 2 cut(s) 689, 991
BanII GRGCYC 2 cut(s) 674, 920
BbrPI CACGTG 3 cut(s) 496, 507, 850
Bbv12I GWGCWC 5 cut(s) 395, 444, 506, 674, 920
BceAI ACGGC 3 cut(s) 136, 570, 843
BcnI CCSGG 3 cut(s) 388, 530, 1076
BcoDI GTCTC 2 cut(s) 110, 307
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 560
BfoI RGCGCY 3 cut(s) 560, 693, 995
BglII AGATCT 2 cut(s) 250, 1124
Bme1390I CCNGG 3 cut(s) 388, 530, 1076
Bme18I GGWCC 1 cut(s) 284
BmgBI CACGTC 2 cut(s) 459, 717
BmgT120I GGNCC 4 cut(s) 284, 324, 342, 878
BmiI GGNNCC 6 cut(s) 286, 513, 691, 880, 993, 1059
BmrFI CCNGG 3 cut(s) 388, 530, 1076
BmsI GCATC 2 cut(s) 211, 303
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpmI CTGGAG 4 cut(s) 182, 212, 221, 227
BpuMI CCSGG 3 cut(s) 388, 530, 1076
BsaAI YACGTR 3 cut(s) 496, 507, 850
BsaHI GRCGYC 6 cut(s) 279, 383, 518, 690, 960, 992
BsaJI CCNNGG 3 cut(s) 472, 607, 874
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 1090
Bse118I RCCGGY 1 cut(s) 842
BseDI CCNNGG 3 cut(s) 472, 607, 874
BseLI CCNNNNNNNGG 2 cut(s) 158, 1090
BseMII CTCAG 1 cut(s) 626
BseSI GKGCMC 1 cut(s) 444
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 2 cut(s) 472, 679
Bsh1236I CGCG 3 cut(s) 322, 488, 609
BshFI GGCC 4 cut(s) 325, 343, 846, 879
BshNI GGYRCC 2 cut(s) 689, 991
BsiHKAI GWGCWC 5 cut(s) 395, 444, 506, 674, 920
BsiSI CCGG 8 cut(s) 76, 92, 354, 387, 515, 529, 843, 1076
BslFI GGGAC 2 cut(s) 270, 1060
BslI CCNNNNNNNGG 2 cut(s) 158, 1090
BsmAI GTCTC 2 cut(s) 110, 307
BsmBI CGTCTC 2 cut(s) 110, 307
BsmFI GGGAC 2 cut(s) 270, 1060
BsnI GGCC 4 cut(s) 325, 343, 846, 879
Bsp1286I GDGCHC 5 cut(s) 395, 444, 506, 674, 920
Bsp143I GATC 6 cut(s) 250, 377, 603, 808, 1057, 1124
BspANI GGCC 4 cut(s) 325, 343, 846, 879
BspCNI CTCAG 1 cut(s) 627
BspFNI CGCG 3 cut(s) 322, 488, 609
BspHI TCATGA 1 cut(s) 330
BspLI GGNNCC 6 cut(s) 286, 513, 691, 880, 993, 1059
BspMAI CTGCAG 1 cut(s) 564
BspPI GGATC 4 cut(s) 385, 598, 1052, 1065
BspQI GCTCTTC 1 cut(s) 494
BspT107I GGYRCC 2 cut(s) 689, 991
BsrBI CCGCTC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 842
BssAI RCCGGY 1 cut(s) 842
BssECI CCNNGG 3 cut(s) 472, 607, 874
BssMI GATC 6 cut(s) 250, 377, 603, 808, 1057, 1124
BssNI GRCGYC 6 cut(s) 279, 383, 518, 690, 960, 992
BssT1I CCWWGG 1 cut(s) 874
Bst4CI ACNGT 3 cut(s) 397, 1003, 1024
Bst6I CTCTTC 3 cut(s) 135, 494, 623
BstACI GRCGYC 6 cut(s) 279, 383, 518, 690, 960, 992
BstAPI GCANNNNNTGC 1 cut(s) 459
BstBAI YACGTR 3 cut(s) 496, 507, 850
BstC8I GCNNGC 4 cut(s) 149, 440, 694, 844
BstDEI CTNAG 1 cut(s) 635
BstDSI CCRYGG 1 cut(s) 607
BstFNI CGCG 3 cut(s) 322, 488, 609
BstH2I RGCGCY 3 cut(s) 560, 693, 995
BstHHI GCGC 4 cut(s) 488, 559, 692, 994
BstKTI GATC 6 cut(s) 253, 380, 606, 811, 1060, 1127
BstMAI GTCTC 2 cut(s) 110, 307
BstMBI GATC 6 cut(s) 250, 377, 603, 808, 1057, 1124
BstNSI RCATGY 2 cut(s) 151, 448
BstSCI CCNGG 3 cut(s) 386, 528, 1074
BstSFI CTRYAG 1 cut(s) 560
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 3 cut(s) 322, 488, 609
BstX2I RGATCY 3 cut(s) 250, 1057, 1124
BstYI RGATCY 3 cut(s) 250, 1057, 1124
BsuRI GGCC 4 cut(s) 325, 343, 846, 879
BtgI CCRYGG 1 cut(s) 607
BtgZI GCGATG 1 cut(s) 823
BtrI CACGTC 2 cut(s) 459, 717
BtsI GCAGTG 1 cut(s) 1015
BtsIMutI CAGTG 2 cut(s) 1015, 1029
Cac8I GCNNGC 4 cut(s) 149, 440, 694, 844
CaiI CAGNNNCTG 1 cut(s) 1043
CciI TCATGA 1 cut(s) 330
CfoI GCGC 4 cut(s) 488, 559, 692, 994
Cfr10I RCCGGY 1 cut(s) 842
Cfr13I GGNCC 4 cut(s) 284, 324, 342, 878
Cfr42I CCGCGG 1 cut(s) 610
CseI GACGC 3 cut(s) 268, 507, 949
Csp6I GTAC 5 cut(s) 130, 256, 814, 903, 1101
CspCI CAANNNNNGTGG 2 cut(s) 985, 1020
CviAII CATG 4 cut(s) 148, 331, 445, 1090
CviQI GTAC 5 cut(s) 130, 256, 814, 903, 1101
DdeI CTNAG 1 cut(s) 635
DinI GGCGCC 2 cut(s) 691, 993
DpnI GATC 6 cut(s) 252, 379, 605, 810, 1059, 1126
DpnII GATC 6 cut(s) 250, 377, 603, 808, 1057, 1124
EaeI YGGCCR 1 cut(s) 844
Eam1104I CTCTTC 3 cut(s) 135, 494, 623
EarI CTCTTC 3 cut(s) 135, 494, 623
EciI GGCGGA 4 cut(s) 39, 99, 630, 960
Ecl136II GAGCTC 2 cut(s) 672, 918
Eco130I CCWWGG 1 cut(s) 874
Eco24I GRGCYC 2 cut(s) 674, 920
Eco47I GGWCC 1 cut(s) 284
Eco53kI GAGCTC 2 cut(s) 672, 918
Eco57I CTGAAG 1 cut(s) 1020
Eco72I CACGTG 3 cut(s) 496, 507, 850
EcoICRI GAGCTC 2 cut(s) 672, 918
EcoO109I RGGNCCY 2 cut(s) 342, 878
EcoRI GAATTC 1 cut(s) 861
EcoT14I CCWWGG 1 cut(s) 874
EcoT38I GRGCYC 2 cut(s) 674, 920
EgeI GGCGCC 2 cut(s) 691, 993
EheI GGCGCC 2 cut(s) 691, 993
ErhI CCWWGG 1 cut(s) 874
Esp3I CGTCTC 2 cut(s) 110, 307
FaeI CATG 4 cut(s) 151, 334, 448, 1093
FaqI GGGAC 2 cut(s) 270, 1060
FatI CATG 4 cut(s) 147, 330, 444, 1089
FauI CCCGC 1 cut(s) 769
FriOI GRGCYC 2 cut(s) 674, 920
FspBI CTAG 1 cut(s) 275
GlaI GCGC 4 cut(s) 487, 558, 691, 993
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 4 cut(s) 182, 212, 221, 227
HaeII RGCGCY 3 cut(s) 560, 693, 995
HaeIII GGCC 4 cut(s) 325, 343, 846, 879
HapII CCGG 8 cut(s) 76, 92, 354, 387, 515, 529, 843, 1076
HgaI GACGC 3 cut(s) 268, 507, 949
HhaI GCGC 4 cut(s) 488, 559, 692, 994
Hin1I GRCGYC 6 cut(s) 279, 383, 518, 690, 960, 992
Hin1II CATG 4 cut(s) 151, 334, 448, 1093
Hin6I GCGC 4 cut(s) 486, 557, 690, 992
HinP1I GCGC 4 cut(s) 486, 557, 690, 992
HincII GTYRAC 1 cut(s) 1081
HindII GTYRAC 1 cut(s) 1081
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 5 cut(s) 79, 85, 95, 311, 622
HpaI GTTAAC 1 cut(s) 1081
HpaII CCGG 8 cut(s) 76, 92, 354, 387, 515, 529, 843, 1076
HphI GGTGA 2 cut(s) 197, 923
Hpy166II GTNNAC 3 cut(s) 442, 835, 1081
Hpy188I TCNGA 7 cut(s) 54, 84, 307, 627, 660, 669, 825
Hpy188III TCNNGA 3 cut(s) 331, 407, 1128
Hpy8I GTNNAC 3 cut(s) 442, 835, 1081
Hpy99I CGWCG 3 cut(s) 284, 385, 523
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 3 cut(s) 397, 1003, 1024
HpyCH4IV ACGT 9 cut(s) 119, 300, 383, 458, 495, 506, 716, 849, 1049
HpyCH4V TGCA 5 cut(s) 442, 453, 465, 562, 696
HpyF3I CTNAG 1 cut(s) 635
HpySE526I ACGT 9 cut(s) 119, 300, 383, 458, 495, 506, 716, 849, 1049
Hsp92I GRCGYC 6 cut(s) 279, 383, 518, 690, 960, 992
Hsp92II CATG 4 cut(s) 151, 334, 448, 1093
HspAI GCGC 4 cut(s) 486, 557, 690, 992
KasI GGCGCC 2 cut(s) 689, 991
KroI GCCGGC 1 cut(s) 842
KroNI GCCGGC 1 cut(s) 844
KspAI GTTAAC 1 cut(s) 1081
KspI CCGCGG 1 cut(s) 610
Kzo9I GATC 6 cut(s) 250, 377, 603, 808, 1057, 1124
LguI GCTCTTC 1 cut(s) 494
LmnI GCTCC 7 cut(s) 54, 231, 240, 246, 390, 677, 794
LweI GCATC 2 cut(s) 211, 303
MaeI CTAG 1 cut(s) 275
MaeII ACGT 9 cut(s) 119, 300, 383, 458, 495, 506, 716, 849, 1049
MaeIII GTNAC 4 cut(s) 59, 647, 751, 1018
MalI GATC 6 cut(s) 252, 379, 605, 810, 1059, 1126
MbiI CCGCTC 1 cut(s) 272
MboI GATC 6 cut(s) 250, 377, 603, 808, 1057, 1124
MboII GAAGA 6 cut(s) 152, 511, 640, 672, 818, 1102
MflI RGATCY 3 cut(s) 250, 1057, 1124
MhlI GDGCHC 5 cut(s) 395, 444, 506, 674, 920
MluCI AATT 6 cut(s) 105, 676, 736, 861, 1063, 1106
Mly113I GGCGCC 2 cut(s) 690, 992
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 2 cut(s) 32, 705
MroNI GCCGGC 1 cut(s) 842
MseI TTAA 2 cut(s) 1052, 1080
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 4 cut(s) 402, 609, 764, 908
MspI CCGG 8 cut(s) 76, 92, 354, 387, 515, 529, 843, 1076
MspR9I CCNGG 3 cut(s) 388, 530, 1076
MvnI CGCG 3 cut(s) 322, 488, 609
NaeI GCCGGC 1 cut(s) 844
NarI GGCGCC 2 cut(s) 690, 992
NciI CCSGG 3 cut(s) 388, 530, 1076
NdeII GATC 6 cut(s) 250, 377, 603, 808, 1057, 1124
NgoMIV GCCGGC 1 cut(s) 842
NlaIII CATG 4 cut(s) 151, 334, 448, 1093
NlaIV GGNNCC 6 cut(s) 286, 513, 691, 880, 993, 1059
NmeAIII GCCGAG 1 cut(s) 497
NmuCI GTSAC 2 cut(s) 59, 751
NspI RCATGY 2 cut(s) 151, 448
PaeI GCATGC 1 cut(s) 151
PagI TCATGA 1 cut(s) 330
PciSI GCTCTTC 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 846
PdiI GCCGGC 1 cut(s) 844
PfeI GAWTC 4 cut(s) 79, 85, 95, 622
PfoI TCCNGGA 1 cut(s) 386
PleI GAGTC 1 cut(s) 319
PluTI GGCGCC 2 cut(s) 693, 995
PmaCI CACGTG 3 cut(s) 496, 507, 850
PmlI CACGTG 3 cut(s) 496, 507, 850
PpsI GAGTC 1 cut(s) 319
Ppu21I YACGTR 3 cut(s) 496, 507, 850
Psp124BI GAGCTC 2 cut(s) 674, 920
PspCI CACGTG 3 cut(s) 496, 507, 850
PspFI CCCAGC 1 cut(s) 287
PspN4I GGNNCC 6 cut(s) 286, 513, 691, 880, 993, 1059
PspPI GGNCC 4 cut(s) 284, 324, 342, 878
PstI CTGCAG 1 cut(s) 564
PstNI CAGNNNCTG 1 cut(s) 1043
PsuI RGATCY 3 cut(s) 250, 1057, 1124
PvuII CAGCTG 2 cut(s) 402, 908
RsaI GTAC 5 cut(s) 131, 257, 815, 904, 1102
RsaNI GTAC 5 cut(s) 130, 256, 814, 903, 1101
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 2 cut(s) 674, 920
SacII CCGCGG 1 cut(s) 610
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 2 cut(s) 1052, 1080
Sau3AI GATC 6 cut(s) 250, 377, 603, 808, 1057, 1124
Sau96I GGNCC 4 cut(s) 284, 324, 342, 878
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 3 cut(s) 388, 530, 1076
SduI GDGCHC 5 cut(s) 395, 444, 506, 674, 920
SfaNI GCATC 2 cut(s) 211, 303
SfcI CTRYAG 1 cut(s) 560
SfoI GGCGCC 2 cut(s) 691, 993
Sfr303I CCGCGG 1 cut(s) 610
SgrBI CCGCGG 1 cut(s) 610
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 335
SphI GCATGC 1 cut(s) 151
Sse9I AATT 6 cut(s) 105, 676, 736, 861, 1063, 1106
SspDI GGCGCC 2 cut(s) 689, 991
SspMI CTAG 1 cut(s) 275
SstI GAGCTC 2 cut(s) 674, 920
StyD4I CCNGG 3 cut(s) 386, 528, 1074
StyI CCWWGG 1 cut(s) 874
TaaI ACNGT 3 cut(s) 397, 1003, 1024
TaiI ACGT 9 cut(s) 122, 303, 386, 461, 498, 509, 719, 852, 1052
TaqI TCGA 4 cut(s) 168, 380, 480, 521
TaqII GACCGA 1 cut(s) 272
TasI AATT 6 cut(s) 105, 676, 736, 861, 1063, 1106
TatI WGTACW 1 cut(s) 902
TauI GCSGC 5 cut(s) 272, 325, 417, 992, 1034
TfiI GAWTC 4 cut(s) 79, 85, 95, 622
Tru1I TTAA 2 cut(s) 1052, 1080
Tru9I TTAA 2 cut(s) 1052, 1080
TscAI CASTG 2 cut(s) 1015, 1029
TseFI GTSAC 2 cut(s) 59, 751
Tsp45I GTSAC 2 cut(s) 59, 751
TspDTI ATGAA 3 cut(s) 153, 319, 1078
TspRI CASTG 2 cut(s) 1015, 1029
VneI GTGCAC 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 3 cut(s) 105, 736, 861
XceI RCATGY 2 cut(s) 151, 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
XspI CTAG 1 cut(s) 275
ZraI GACGTC 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.