MD02G1137000.v1.1

Protein SHI RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
11452120 .. 11454065
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1137000.v1.1.491

Sequence Viewer

Length: 1119 bp
ATGGCTGGTTTTTTCTCATTAGGCAGAGGCGGCAGCGACGACCAGCATAATAGCAACAACCCACCCCCGCCTGATCACCACAACCACCAACAAATTGCTCCGGAGACGTTGTTCTGGTACAAGAATGAGGACGTGGCAAATCAGCCGTACAAGGGCTTCGAGCTGTTGCAGCAACAGGAGCAGCTCCTCCAGCTCCAAACCCAGCCGCCCCCACGGCTTTACCAGCCTCATCCCCACCACCATCAAGATCTCTACGCTTCTGCGGCTGCTCTAGGGGTGGGTCCCAGCAGCAGGGGATCGGATGACACTTCATCGTCGAGGTCGGCCGCAGCGGCGTTTACGATGATGAGGTCGTCGTCAGGAGGAAGAGGAGGAAGCGGAGGAAGCGGAGGTGGCGCCAGCTGTCAGGACTGCGGGAACCAAGCGAAGAAAGACTGCATACACATGAGGTGCAGGACTTGCTGCAAGAACCGAGGGTTAGACTGTCCGACCCACGTCAAGAGCACGTGGGTTCCGGCGTCGAAACGCCGTGAGCGGCAGCAGCAGCTCGCCGCCTTGCAGCACCAACACCACCAACAGCAAGATCATTTACAACAACACCAGAACCAACAGCAGCAGCAGCTTCAAGTGATTCGTGGAGAAAGTTCGAAAAGACTCAGAGAAAATCCGAGCTCGAATCCCTCTCTTCGTATTCACACAAACACAAATACTTCAGGCTTGGATGTGGTGAATTTCCCGCCGGAAGTAAGATCGCAGGCTGTATTTCGCTGCGTGAAAGTGAGCGCAATGGACGACGAGGTCCAGTACGCGTACCAGACGGCTGTGAACATCGCAGGCCATTGGTTTAAAGGAATTCTCAACGACCATGGACCCGAATCCCCTAACTACAACATGAACATGGCAGCTGAAACCTCGTCTGGTGGTGGAGTTAATTTCCAACCGCTCAATCTCATCGCGGGAGCCACCACCGCCGTTAACACAGCATCCATTGACGGTGGTGGCGGTCACGAGGGAATGGCAGTGGCGGGTTCGACGACAGTTATAGATCCTTCTTCTCTATATCCAGCTCCAATTAACACATACATGGGTACGCAATTCTTCCCACCACCAAGATCTTGA

Protein Analysis

373

Amino Acids

40.42

Weight (kDa)

7.31

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 132 - 292 9.9e-60 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 797
AccB1I GGYRCC 1 cut(s) 395
AccBSI CCGCTC 2 cut(s) 535, 943
AccII CGCG 2 cut(s) 809, 956
AccIII TCCGGA 1 cut(s) 100
AclWI GGATC 2 cut(s) 304, 1040
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 2 cut(s) 730, 852
AcuI CTGAAG 1 cut(s) 696
AcvI CACGTG 1 cut(s) 507
AcyI GRCGYC 2 cut(s) 396, 518
AfaI GTAC 5 cut(s) 119, 149, 806, 812, 1090
AfiI CCNNNNNNNGG 2 cut(s) 152, 291
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 1 cut(s) 626
AjiI CACGTC 2 cut(s) 133, 496
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 9 cut(s) 163, 184, 193, 402, 547, 622, 672, 905, 1067
AluI AGCT 9 cut(s) 163, 184, 193, 402, 547, 622, 672, 905, 1067
Alw21I GWGCWC 2 cut(s) 506, 674
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 304, 1040
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 2 cut(s) 324, 835
ApoI RAATTY 2 cut(s) 730, 852
AspLEI GCGC 2 cut(s) 398, 785
AspS9I GGNCC 3 cut(s) 281, 799, 869
AsuHPI GGTGA 2 cut(s) 68, 739
AsuII TTCGAA 1 cut(s) 647
AvaII GGWCC 3 cut(s) 281, 799, 869
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 674
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
BauI CACGAG 1 cut(s) 1007
BbrPI CACGTG 1 cut(s) 507
Bbv12I GWGCWC 2 cut(s) 506, 674
BccI CCATC 1 cut(s) 249
BceAI ACGGC 5 cut(s) 130, 230, 513, 834, 956
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 399
BglI GCCNNNNNGGC 2 cut(s) 214, 332
BglII AGATCT 2 cut(s) 247, 1112
Bme18I GGWCC 3 cut(s) 281, 799, 869
BmgBI CACGTC 2 cut(s) 133, 496
BmgT120I GGNCC 3 cut(s) 281, 799, 869
BmiI GGNNCC 7 cut(s) 282, 283, 397, 419, 513, 871, 961
BmsI GCATC 1 cut(s) 992
BoxI GACNNNNGTC 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 173
Bpu14I TTCGAA 1 cut(s) 647
BsaAI YACGTR 1 cut(s) 507
BsaHI GRCGYC 2 cut(s) 396, 518
BsaJI CCNNGG 3 cut(s) 212, 472, 865
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 291
Bse1I ACTGG 1 cut(s) 802
Bse3DI GCAATG 1 cut(s) 792
BseAI TCCGGA 1 cut(s) 100
BseDI CCNNGG 3 cut(s) 212, 472, 865
BseGI GGATG 4 cut(s) 229, 307, 727, 983
BseLI CCNNNNNNNGG 2 cut(s) 152, 291
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 1 cut(s) 670
BseNI ACTGG 1 cut(s) 802
BseRI GAGGAG 2 cut(s) 176, 384
BseX3I CGGCCG 1 cut(s) 324
BseYI CCCAGC 2 cut(s) 201, 284
BsgI GTGCAG 1 cut(s) 472
Bsh1236I CGCG 2 cut(s) 809, 956
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 2 cut(s) 326, 837
BshNI GGYRCC 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 327
BsiHKAI GWGCWC 2 cut(s) 506, 674
BsiSI CCGG 3 cut(s) 101, 515, 740
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 152, 291
BsmAI GTCTC 1 cut(s) 98
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 2 cut(s) 326, 837
Bsp119I TTCGAA 1 cut(s) 647
Bsp1286I GDGCHC 2 cut(s) 506, 674
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 7 cut(s) 73, 247, 296, 583, 749, 1045, 1112
Bsp19I CCATGG 1 cut(s) 865
BspANI GGCC 2 cut(s) 326, 837
BspCNI CTCAG 1 cut(s) 669
BspEI TCCGGA 1 cut(s) 100
BspFNI CGCG 2 cut(s) 809, 956
BspLI GGNNCC 7 cut(s) 282, 283, 397, 419, 513, 871, 961
BspPI GGATC 2 cut(s) 304, 1040
BspT104I TTCGAA 1 cut(s) 647
BspT107I GGYRCC 1 cut(s) 395
BsrBI CCGCTC 2 cut(s) 535, 943
BsrDI GCAATG 1 cut(s) 792
BsrI ACTGG 1 cut(s) 802
BssECI CCNNGG 3 cut(s) 212, 472, 865
BssMI GATC 7 cut(s) 73, 247, 296, 583, 749, 1045, 1112
BssNI GRCGYC 2 cut(s) 396, 518
BssSI CACGAG 1 cut(s) 1007
BssT1I CCWWGG 1 cut(s) 865
Bst2BI CACGAG 1 cut(s) 1007
Bst4CI ACNGT 3 cut(s) 485, 995, 1039
Bst6I CTCTTC 2 cut(s) 361, 690
BstACI GRCGYC 2 cut(s) 396, 518
BstAPI GCANNNNNTGC 1 cut(s) 459
BstBAI YACGTR 1 cut(s) 507
BstBI TTCGAA 1 cut(s) 647
BstC8I GCNNGC 4 cut(s) 400, 549, 756, 835
BstDEI CTNAG 1 cut(s) 656
BstDSI CCRYGG 2 cut(s) 212, 865
BstF5I GGATG 4 cut(s) 229, 307, 727, 983
BstFNI CGCG 2 cut(s) 809, 956
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 2 cut(s) 398, 785
BstKTI GATC 7 cut(s) 76, 250, 299, 586, 752, 1048, 1115
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 7 cut(s) 73, 247, 296, 583, 749, 1045, 1112
BstMCI CGRYCG 1 cut(s) 327
BstPAI GACNNNNGTC 1 cut(s) 494
BstUI CGCG 2 cut(s) 809, 956
BstX2I RGATCY 3 cut(s) 247, 1045, 1112
BstYI RGATCY 3 cut(s) 247, 1045, 1112
BstZI CGGCCG 1 cut(s) 324
BsuRI GGCC 2 cut(s) 326, 837
BtgI CCRYGG 2 cut(s) 212, 865
BtgZI GCGATG 2 cut(s) 814, 937
BtrI CACGTC 2 cut(s) 133, 496
BtsCI GGATG 4 cut(s) 229, 307, 727, 983
BtsI GCAGTG 1 cut(s) 1026
BtsIMutI CAGTG 1 cut(s) 1026
Cac8I GCNNGC 4 cut(s) 400, 549, 756, 835
CfoI GCGC 2 cut(s) 398, 785
Cfr13I GGNCC 3 cut(s) 281, 799, 869
CseI GACGC 1 cut(s) 507
Csp6I GTAC 5 cut(s) 118, 148, 805, 811, 1089
CviAII CATG 5 cut(s) 445, 866, 892, 898, 1084
CviQI GTAC 5 cut(s) 118, 148, 805, 811, 1089
DdeI CTNAG 1 cut(s) 656
DinI GGCGCC 1 cut(s) 397
DpnI GATC 7 cut(s) 75, 249, 298, 585, 751, 1047, 1114
DpnII GATC 7 cut(s) 73, 247, 296, 583, 749, 1045, 1112
DraI TTTAAA 1 cut(s) 847
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 1 cut(s) 324
EagI CGGCCG 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 361, 690
EarI CTCTTC 2 cut(s) 361, 690
Ecl136II GAGCTC 1 cut(s) 672
EclXI CGGCCG 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 865
Eco24I GRGCYC 1 cut(s) 674
Eco47I GGWCC 3 cut(s) 281, 799, 869
Eco52I CGGCCG 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 696
Eco72I CACGTG 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 281
EcoRI GAATTC 1 cut(s) 852
EcoT14I CCWWGG 1 cut(s) 865
EcoT38I GRGCYC 1 cut(s) 674
EgeI GGCGCC 1 cut(s) 397
EheI GGCGCC 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 865
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 5 cut(s) 448, 869, 895, 901, 1087
FaqI GGGAC 1 cut(s) 267
FatI CATG 5 cut(s) 444, 865, 891, 897, 1083
FauI CCCGC 5 cut(s) 75, 407, 744, 949, 1018
FbaI TGATCA 1 cut(s) 73
FokI GGATG 4 cut(s) 216, 314, 734, 970
FriOI GRGCYC 1 cut(s) 674
FspBI CTAG 1 cut(s) 272
GlaI GCGC 2 cut(s) 397, 784
GsaI CCCAGC 2 cut(s) 205, 288
GsuI CTGGAG 1 cut(s) 173
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 2 cut(s) 326, 837
HapII CCGG 3 cut(s) 101, 515, 740
HgaI GACGC 1 cut(s) 507
HhaI GCGC 2 cut(s) 398, 785
Hin1I GRCGYC 2 cut(s) 396, 518
Hin1II CATG 5 cut(s) 448, 869, 895, 901, 1087
Hin6I GCGC 2 cut(s) 396, 783
HinP1I GCGC 2 cut(s) 396, 783
HincII GTYRAC 1 cut(s) 976
HindII GTYRAC 1 cut(s) 976
HinfI GANTC 4 cut(s) 631, 654, 676, 875
HpaI GTTAAC 1 cut(s) 976
HpaII CCGG 3 cut(s) 101, 515, 740
HphI GGTGA 2 cut(s) 68, 739
Hpy166II GTNNAC 3 cut(s) 339, 826, 976
Hpy188I TCNGA 4 cut(s) 301, 489, 659, 669
Hpy188III TCNNGA 7 cut(s) 101, 245, 360, 407, 499, 1007, 1116
Hpy8I GTNNAC 3 cut(s) 339, 826, 976
Hpy99I CGWCG 6 cut(s) 41, 319, 358, 523, 797, 1036
HpyAV CCTTC 1 cut(s) 1059
HpyCH4III ACNGT 3 cut(s) 485, 995, 1039
HpyCH4IV ACGT 4 cut(s) 107, 132, 495, 506
HpyCH4V TGCA 5 cut(s) 169, 438, 453, 465, 559
HpyF3I CTNAG 1 cut(s) 656
HpySE526I ACGT 4 cut(s) 107, 132, 495, 506
Hsp92I GRCGYC 2 cut(s) 396, 518
Hsp92II CATG 5 cut(s) 448, 869, 895, 901, 1087
HspAI GCGC 2 cut(s) 396, 783
KasI GGCGCC 1 cut(s) 395
KflI GGGWCCC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 73
KspAI GTTAAC 1 cut(s) 976
Kzo9I GATC 7 cut(s) 73, 247, 296, 583, 749, 1045, 1112
LmnI GCTCC 6 cut(s) 103, 178, 189, 198, 959, 1072
LweI GCATC 1 cut(s) 992
MaeI CTAG 1 cut(s) 272
MaeII ACGT 4 cut(s) 107, 132, 495, 506
MaeIII GTNAC 1 cut(s) 1004
MalI GATC 7 cut(s) 75, 249, 298, 585, 751, 1047, 1114
MbiI CCGCTC 2 cut(s) 535, 943
MboI GATC 7 cut(s) 73, 247, 296, 583, 749, 1045, 1112
MboII GAAGA 5 cut(s) 378, 439, 677, 1044, 1090
MflI RGATCY 3 cut(s) 247, 1045, 1112
MhlI GDGCHC 2 cut(s) 506, 674
MluCI AATT 6 cut(s) 93, 730, 852, 931, 1071, 1094
MluI ACGCGT 1 cut(s) 807
Mly113I GGCGCC 1 cut(s) 396
MlyI GAGTC 1 cut(s) 648
MmeI TCCRAC 2 cut(s) 512, 961
MroI TCCGGA 1 cut(s) 100
MseI TTAA 4 cut(s) 846, 930, 975, 1074
MslI CAYNNNNRTG 3 cut(s) 443, 896, 1082
MspA1I CMGCKG 3 cut(s) 332, 402, 905
MspI CCGG 3 cut(s) 101, 515, 740
MvnI CGCG 2 cut(s) 809, 956
NarI GGCGCC 1 cut(s) 396
NcoI CCATGG 1 cut(s) 865
NdeII GATC 7 cut(s) 73, 247, 296, 583, 749, 1045, 1112
NlaIII CATG 5 cut(s) 448, 869, 895, 901, 1087
NlaIV GGNNCC 7 cut(s) 282, 283, 397, 419, 513, 871, 961
NmuCI GTSAC 1 cut(s) 1004
NspV TTCGAA 1 cut(s) 647
PfeI GAWTC 3 cut(s) 631, 676, 875
PflFI GACNNNGTC 1 cut(s) 797
PleI GAGTC 1 cut(s) 648
PluTI GGCGCC 1 cut(s) 399
PmaCI CACGTG 1 cut(s) 507
PmlI CACGTG 1 cut(s) 507
PpsI GAGTC 1 cut(s) 648
Ppu21I YACGTR 1 cut(s) 507
PpuMI RGGWCCY 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 494
Psp124BI GAGCTC 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 281
PspCI CACGTG 1 cut(s) 507
PspFI CCCAGC 2 cut(s) 201, 284
PspN4I GGNNCC 7 cut(s) 282, 283, 397, 419, 513, 871, 961
PspPI GGNCC 3 cut(s) 281, 799, 869
PspPPI RGGWCCY 1 cut(s) 281
PsuI RGATCY 3 cut(s) 247, 1045, 1112
PsyI GACNNNGTC 1 cut(s) 797
PvuII CAGCTG 2 cut(s) 402, 905
RsaI GTAC 5 cut(s) 119, 149, 806, 812, 1090
RsaNI GTAC 5 cut(s) 118, 148, 805, 811, 1089
RseI CAYNNNNRTG 3 cut(s) 443, 896, 1082
SacI GAGCTC 1 cut(s) 674
SaqAI TTAA 4 cut(s) 846, 930, 975, 1074
Sau3AI GATC 7 cut(s) 73, 247, 296, 583, 749, 1045, 1112
Sau96I GGNCC 3 cut(s) 281, 799, 869
SchI GAGTC 1 cut(s) 648
SduI GDGCHC 2 cut(s) 506, 674
SfaNI GCATC 1 cut(s) 992
SfoI GGCGCC 1 cut(s) 397
SfuI TTCGAA 1 cut(s) 647
SinI GGWCC 3 cut(s) 281, 799, 869
SmiMI CAYNNNNRTG 3 cut(s) 443, 896, 1082
Sse9I AATT 6 cut(s) 93, 730, 852, 931, 1071, 1094
SspDI GGCGCC 1 cut(s) 395
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 674
StyI CCWWGG 1 cut(s) 865
TaaI ACNGT 3 cut(s) 485, 995, 1039
TaiI ACGT 4 cut(s) 110, 135, 498, 509
TaqI TCGA 6 cut(s) 159, 317, 521, 647, 674, 1031
TasI AATT 6 cut(s) 93, 730, 852, 931, 1071, 1094
TauI GCSGC 7 cut(s) 33, 208, 266, 329, 335, 538, 554
TfiI GAWTC 3 cut(s) 631, 676, 875
Tru1I TTAA 4 cut(s) 846, 930, 975, 1074
Tru9I TTAA 4 cut(s) 846, 930, 975, 1074
TscAI CASTG 1 cut(s) 1026
TseFI GTSAC 1 cut(s) 1004
Tsp45I GTSAC 1 cut(s) 1004
TspDTI ATGAA 2 cut(s) 300, 908
TspRI CASTG 1 cut(s) 1026
Tth111I GACNNNGTC 1 cut(s) 797
VpaK11BI GGWCC 3 cut(s) 281, 799, 869
XapI RAATTY 2 cut(s) 730, 852
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.