Rh2DG141500

Protein SHI RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
11864311 .. 11869165
4855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG141500.1

Sequence Viewer

Length: 1170 bp
ATGGCTGGATTTTTCTCATTAGGCGGAGGAGGAGGAGGAGGTCGGAGCAGTCACAACCCAGAAAGCCGGAATCAGAATCAACCGGAATCAAGTGAAATTCCGCCAGAGACGTTGTTTTGGTACAAGAATGAAGAGGGCATGCCGTTCAAAGGAAGCTTCGAGCTATGGCAGCACCAGCAGCAGCAACTCCAGCATCACCAGCACCAGCAGCACCAGCTCCAGCAGCTCCAGCTCCAGCAAGATCTGTACGCCTCAGCAGCTGCTCTAGGCGTCGGTCCCAGCAGCATCAACGTCTCCGATGAGTCGTCGTCGCGGCCCTTCATGATGATGAGACCCTCCTCGTCCGGCGGCGGGGGAGGAGGAGGTGGAGGTGGATCGACGTCCGGGAGCACGGTCAGCTGTCAAGACTGCGGCAACCAAGCCAAGAAAGATTGCGTGCACATGCGGTGCAGGACGTGCTGCAAGAGCCGAGGGTTCGACTGCGCGACCCACGTGAAGAGCACGTGGGTTCCGGCGTCGAAACGCCGGGAGAGGCAGCAGCAGCACCTCACGGCGCTGCAGCAACAGCAACAGCAACACACTCAACAAGAAGTTCAAGTGATCCGCGGAGGCGGAGAGAATCCGAAGAGGCTGAGAGAGAATAGTAACAACAATCCGAATAATCCGAGCTCCAATTCTTCTCTGGGCGCCTGCACTCGCATTATCACAAACACGTCAGGGTTGGAAGTGGGGAATTTTCCAGCAGAAGTGACTTCTCCCGCAGTGTTTCGCTGCGTGAGAGTAAGCTCCATCGACGATGACGAAGATCAGTACGCATATCAGACGGCTGTGAACATCGCCGGCCACGTGTTCAAGGGAATTCTCTACAACCAAGGCCCCGATACTAACTATAATATGAGTACAGCTGGTGAGAGCTCGTCTGGTGGTGGAGGAGGCGGAGGCGGAGGCGGAGGTGGTGGAGGAGTCATTCAACCCCTTAATCTCATCAATGCGGCGCCCACGACAGTTGGCAGTGGCGGTGTAACAGTGGCAGCCGCTTCAGGTTCTGGGACGTTAATGGATCCTAATTCTCTATACCCGGTTAACCCATTCATGGCTTCGGGAGATCATAGCTGGAATTTGCGCTTGAGATCTGCACTTCCACAAACACCAACATGCGAACAGTTTTGA

Protein Analysis

389

Amino Acids

41.13

Weight (kDa)

6.63

Isoelectric Point (pI)

65.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 131 - 294 4.6e-67 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 383
AccB1I GGYRCC 2 cut(s) 686, 994
AccII CGCG 3 cut(s) 313, 485, 606
AclWI GGATC 4 cut(s) 382, 595, 1055, 1068
AcoI YGGCCR 1 cut(s) 841
AcsI RAATTY 4 cut(s) 96, 733, 858, 1117
AcuI CTGAAG 1 cut(s) 1023
AcvI CACGTG 3 cut(s) 493, 504, 847
AcyI GRCGYC 5 cut(s) 270, 380, 515, 687, 995
AfaI GTAC 4 cut(s) 122, 248, 812, 901
AfiI CCNNNNNNNGG 3 cut(s) 149, 351, 1093
AflIII ACRYGT 2 cut(s) 711, 846
AgsI TTSAA 4 cut(s) 148, 596, 853, 971
AjiI CACGTC 2 cut(s) 456, 714
Alw21I GWGCWC 5 cut(s) 392, 441, 503, 671, 917
Alw26I GTCTC 3 cut(s) 101, 298, 325
Alw44I GTGCAC 1 cut(s) 437
AlwI GGATC 4 cut(s) 382, 595, 1055, 1068
AlwNI CAGNNNCTG 2 cut(s) 260, 1046
AoxI GGCC 3 cut(s) 314, 841, 874
ApaLI GTGCAC 1 cut(s) 437
ApoI RAATTY 4 cut(s) 96, 733, 858, 1117
AspLEI GCGC 5 cut(s) 485, 556, 689, 997, 1125
AspS9I GGNCC 3 cut(s) 275, 315, 875
AsuC2I CCSGG 3 cut(s) 385, 527, 1079
AsuHPI GGTGA 2 cut(s) 188, 920
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 441
BamHI GGATCC 1 cut(s) 1060
BanI GGYRCC 2 cut(s) 686, 994
BanII GRGCYC 2 cut(s) 671, 917
BbrPI CACGTG 3 cut(s) 493, 504, 847
Bbv12I GWGCWC 5 cut(s) 392, 441, 503, 671, 917
BbvCI CCTCAGC 1 cut(s) 253
BccI CCATC 1 cut(s) 797
BceAI ACGGC 3 cut(s) 127, 567, 840
BcnI CCSGG 3 cut(s) 385, 527, 1079
BcoDI GTCTC 3 cut(s) 101, 298, 325
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 557
BfoI RGCGCY 3 cut(s) 557, 690, 998
BglII AGATCT 2 cut(s) 241, 1130
Bme1390I CCNGG 3 cut(s) 385, 527, 1079
Bme18I GGWCC 1 cut(s) 275
BmgBI CACGTC 2 cut(s) 456, 714
BmgT120I GGNCC 3 cut(s) 275, 315, 875
BmiI GGNNCC 6 cut(s) 277, 510, 688, 877, 996, 1062
BmrFI CCNGG 3 cut(s) 385, 527, 1079
BmsI GCATC 2 cut(s) 202, 294
BpmI CTGGAG 4 cut(s) 173, 203, 212, 218
Bpu10I CCTNAGC 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 1147
BpuMI CCSGG 3 cut(s) 385, 527, 1079
BsaAI YACGTR 3 cut(s) 493, 504, 847
BsaHI GRCGYC 5 cut(s) 270, 380, 515, 687, 995
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 3 cut(s) 469, 604, 871
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 351, 1093
Bse118I RCCGGY 1 cut(s) 839
BseDI CCNNGG 3 cut(s) 469, 604, 871
BseLI CCNNNNNNNGG 3 cut(s) 149, 351, 1093
BseMII CTCAG 2 cut(s) 267, 623
BseRI GAGGAG 9 cut(s) 42, 45, 48, 51, 328, 372, 375, 945, 975
BseSI GKGCMC 1 cut(s) 441
BseYI CCCAGC 1 cut(s) 278
BsgI GTGCAG 3 cut(s) 469, 676, 1119
Bsh1236I CGCG 3 cut(s) 313, 485, 606
BshFI GGCC 3 cut(s) 316, 843, 876
BshNI GGYRCC 2 cut(s) 686, 994
BsiHKAI GWGCWC 5 cut(s) 392, 441, 503, 671, 917
BsiSI CCGG 8 cut(s) 67, 83, 345, 384, 512, 526, 840, 1079
BslFI GGGAC 2 cut(s) 261, 1063
BslI CCNNNNNNNGG 3 cut(s) 149, 351, 1093
BsmAI GTCTC 3 cut(s) 101, 298, 325
BsmBI CGTCTC 2 cut(s) 101, 298
BsmFI GGGAC 2 cut(s) 261, 1063
BsnI GGCC 3 cut(s) 316, 843, 876
Bso31I GGTCTC 1 cut(s) 325
Bsp1286I GDGCHC 5 cut(s) 392, 441, 503, 671, 917
Bsp143I GATC 7 cut(s) 241, 374, 600, 805, 1060, 1105, 1130
BspANI GGCC 3 cut(s) 316, 843, 876
BspCNI CTCAG 2 cut(s) 266, 624
BspFNI CGCG 3 cut(s) 313, 485, 606
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 6 cut(s) 277, 510, 688, 877, 996, 1062
BspMAI CTGCAG 1 cut(s) 561
BspPI GGATC 4 cut(s) 382, 595, 1055, 1068
BspQI GCTCTTC 1 cut(s) 491
BspT107I GGYRCC 2 cut(s) 686, 994
BspTNI GGTCTC 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 839
BssAI RCCGGY 1 cut(s) 839
BssECI CCNNGG 3 cut(s) 469, 604, 871
BssMI GATC 7 cut(s) 241, 374, 600, 805, 1060, 1105, 1130
BssNI GRCGYC 5 cut(s) 270, 380, 515, 687, 995
BssT1I CCWWGG 1 cut(s) 871
Bst4CI ACNGT 4 cut(s) 394, 1006, 1027, 1164
Bst6I CTCTTC 3 cut(s) 126, 491, 620
BstACI GRCGYC 5 cut(s) 270, 380, 515, 687, 995
BstAPI GCANNNNNTGC 1 cut(s) 456
BstBAI YACGTR 3 cut(s) 493, 504, 847
BstC8I GCNNGC 4 cut(s) 140, 437, 691, 841
BstDEI CTNAG 2 cut(s) 253, 632
BstDSI CCRYGG 1 cut(s) 604
BstFNI CGCG 3 cut(s) 313, 485, 606
BstH2I RGCGCY 3 cut(s) 557, 690, 998
BstHHI GCGC 5 cut(s) 485, 556, 689, 997, 1125
BstKTI GATC 7 cut(s) 244, 377, 603, 808, 1063, 1108, 1133
BstMAI GTCTC 3 cut(s) 101, 298, 325
BstMBI GATC 7 cut(s) 241, 374, 600, 805, 1060, 1105, 1130
BstNSI RCATGY 3 cut(s) 142, 445, 1158
BstSCI CCNGG 3 cut(s) 383, 525, 1077
BstSFI CTRYAG 1 cut(s) 557
BstSLI GKGCMC 1 cut(s) 441
BstUI CGCG 3 cut(s) 313, 485, 606
BstX2I RGATCY 3 cut(s) 241, 1060, 1130
BstYI RGATCY 3 cut(s) 241, 1060, 1130
BsuRI GGCC 3 cut(s) 316, 843, 876
BtgI CCRYGG 1 cut(s) 604
BtgZI GCGATG 1 cut(s) 820
BtrI CACGTC 2 cut(s) 456, 714
BtsI GCAGTG 2 cut(s) 768, 1018
BtsIMutI CAGTG 3 cut(s) 768, 1018, 1032
Cac8I GCNNGC 4 cut(s) 140, 437, 691, 841
CaiI CAGNNNCTG 2 cut(s) 260, 1046
CciI TCATGA 1 cut(s) 321
CfoI GCGC 5 cut(s) 485, 556, 689, 997, 1125
Cfr10I RCCGGY 1 cut(s) 839
Cfr13I GGNCC 3 cut(s) 275, 315, 875
Cfr42I CCGCGG 1 cut(s) 607
CseI GACGC 2 cut(s) 259, 504
Csp6I GTAC 4 cut(s) 121, 247, 811, 900
CspCI CAANNNNNGTGG 2 cut(s) 988, 1023
CviAII CATG 5 cut(s) 139, 322, 442, 1093, 1155
CviQI GTAC 4 cut(s) 121, 247, 811, 900
DdeI CTNAG 2 cut(s) 253, 632
DinI GGCGCC 2 cut(s) 688, 996
DpnI GATC 7 cut(s) 243, 376, 602, 807, 1062, 1107, 1132
DpnII GATC 7 cut(s) 241, 374, 600, 805, 1060, 1105, 1130
EaeI YGGCCR 1 cut(s) 841
Eam1104I CTCTTC 3 cut(s) 126, 491, 620
EarI CTCTTC 3 cut(s) 126, 491, 620
EciI GGCGGA 6 cut(s) 39, 90, 627, 951, 957, 963
Ecl136II GAGCTC 2 cut(s) 669, 915
Eco130I CCWWGG 1 cut(s) 871
Eco24I GRGCYC 2 cut(s) 671, 917
Eco31I GGTCTC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 2 cut(s) 669, 915
Eco57I CTGAAG 1 cut(s) 1023
Eco72I CACGTG 3 cut(s) 493, 504, 847
EcoICRI GAGCTC 2 cut(s) 669, 915
EcoO109I RGGNCCY 1 cut(s) 875
EcoRI GAATTC 1 cut(s) 858
EcoT14I CCWWGG 1 cut(s) 871
EcoT38I GRGCYC 2 cut(s) 671, 917
EgeI GGCGCC 2 cut(s) 688, 996
EheI GGCGCC 2 cut(s) 688, 996
ErhI CCWWGG 1 cut(s) 871
Esp3I CGTCTC 2 cut(s) 101, 298
FaeI CATG 5 cut(s) 142, 325, 445, 1096, 1158
FaqI GGGAC 2 cut(s) 261, 1063
FatI CATG 5 cut(s) 138, 321, 441, 1092, 1154
FauI CCCGC 2 cut(s) 344, 766
FriOI GRGCYC 2 cut(s) 671, 917
FspBI CTAG 1 cut(s) 266
GlaI GCGC 5 cut(s) 484, 555, 688, 996, 1124
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 4 cut(s) 173, 203, 212, 218
HaeII RGCGCY 3 cut(s) 557, 690, 998
HaeIII GGCC 3 cut(s) 316, 843, 876
HapII CCGG 8 cut(s) 67, 83, 345, 384, 512, 526, 840, 1079
HgaI GACGC 2 cut(s) 259, 504
HhaI GCGC 5 cut(s) 485, 556, 689, 997, 1125
Hin1I GRCGYC 5 cut(s) 270, 380, 515, 687, 995
Hin1II CATG 5 cut(s) 142, 325, 445, 1096, 1158
Hin6I GCGC 5 cut(s) 483, 554, 687, 995, 1123
HinP1I GCGC 5 cut(s) 483, 554, 687, 995, 1123
HincII GTYRAC 1 cut(s) 1084
HindII GTYRAC 1 cut(s) 1084
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 6 cut(s) 70, 76, 86, 302, 619, 963
HpaI GTTAAC 1 cut(s) 1084
HpaII CCGG 8 cut(s) 67, 83, 345, 384, 512, 526, 840, 1079
HphI GGTGA 2 cut(s) 188, 920
Hpy166II GTNNAC 3 cut(s) 439, 832, 1084
Hpy188I TCNGA 7 cut(s) 45, 75, 298, 624, 657, 666, 822
Hpy188III TCNNGA 3 cut(s) 322, 404, 1101
Hpy8I GTNNAC 3 cut(s) 439, 832, 1084
Hpy99I CGWCG 6 cut(s) 275, 310, 313, 382, 520, 797
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 4 cut(s) 394, 1006, 1027, 1164
HpyCH4IV ACGT 9 cut(s) 110, 291, 380, 455, 492, 503, 713, 846, 1052
HpyCH4V TGCA 6 cut(s) 439, 450, 462, 559, 693, 1136
HpyF3I CTNAG 2 cut(s) 253, 632
HpySE526I ACGT 9 cut(s) 110, 291, 380, 455, 492, 503, 713, 846, 1052
Hsp92I GRCGYC 5 cut(s) 270, 380, 515, 687, 995
Hsp92II CATG 5 cut(s) 142, 325, 445, 1096, 1158
HspAI GCGC 5 cut(s) 483, 554, 687, 995, 1123
KasI GGCGCC 2 cut(s) 686, 994
KroI GCCGGC 1 cut(s) 839
KroNI GCCGGC 1 cut(s) 841
KspAI GTTAAC 1 cut(s) 1084
KspI CCGCGG 1 cut(s) 607
Kzo9I GATC 7 cut(s) 241, 374, 600, 805, 1060, 1105, 1130
LguI GCTCTTC 1 cut(s) 491
LmnI GCTCC 7 cut(s) 45, 222, 231, 237, 387, 674, 791
LweI GCATC 2 cut(s) 202, 294
MaeI CTAG 1 cut(s) 266
MaeII ACGT 9 cut(s) 110, 291, 380, 455, 492, 503, 713, 846, 1052
MaeIII GTNAC 4 cut(s) 50, 644, 748, 1021
MalI GATC 7 cut(s) 243, 376, 602, 807, 1062, 1107, 1132
MboI GATC 7 cut(s) 241, 374, 600, 805, 1060, 1105, 1130
MboII GAAGA 5 cut(s) 143, 508, 637, 669, 815
MflI RGATCY 3 cut(s) 241, 1060, 1130
MhlI GDGCHC 5 cut(s) 392, 441, 503, 671, 917
MluCI AATT 6 cut(s) 96, 673, 733, 858, 1066, 1117
Mly113I GGCGCC 2 cut(s) 687, 995
MlyI GAGTC 2 cut(s) 311, 972
MmeI TCCRAC 2 cut(s) 23, 702
MroNI GCCGGC 1 cut(s) 839
MseI TTAA 3 cut(s) 978, 1055, 1083
MslI CAYNNNNRTG 2 cut(s) 326, 1153
MspA1I CMGCKG 4 cut(s) 260, 399, 606, 905
MspI CCGG 8 cut(s) 67, 83, 345, 384, 512, 526, 840, 1079
MspR9I CCNGG 3 cut(s) 385, 527, 1079
MvnI CGCG 3 cut(s) 313, 485, 606
NaeI GCCGGC 1 cut(s) 841
NarI GGCGCC 2 cut(s) 687, 995
NciI CCSGG 3 cut(s) 385, 527, 1079
NdeII GATC 7 cut(s) 241, 374, 600, 805, 1060, 1105, 1130
NgoMIV GCCGGC 1 cut(s) 839
NlaIII CATG 5 cut(s) 142, 325, 445, 1096, 1158
NlaIV GGNNCC 6 cut(s) 277, 510, 688, 877, 996, 1062
NmeAIII GCCGAG 1 cut(s) 494
NmuCI GTSAC 2 cut(s) 50, 748
NspI RCATGY 3 cut(s) 142, 445, 1158
PaeI GCATGC 1 cut(s) 142
PagI TCATGA 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 491
PcsI WCGNNNNNNNCGW 2 cut(s) 798, 843
PdiI GCCGGC 1 cut(s) 841
PfeI GAWTC 4 cut(s) 70, 76, 86, 619
PfoI TCCNGGA 1 cut(s) 383
PleI GAGTC 2 cut(s) 310, 971
PluTI GGCGCC 2 cut(s) 690, 998
PmaCI CACGTG 3 cut(s) 493, 504, 847
PmlI CACGTG 3 cut(s) 493, 504, 847
PpsI GAGTC 2 cut(s) 310, 971
Ppu21I YACGTR 3 cut(s) 493, 504, 847
Psp124BI GAGCTC 2 cut(s) 671, 917
PspCI CACGTG 3 cut(s) 493, 504, 847
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 6 cut(s) 277, 510, 688, 877, 996, 1062
PspPI GGNCC 3 cut(s) 275, 315, 875
PstI CTGCAG 1 cut(s) 561
PstNI CAGNNNCTG 2 cut(s) 260, 1046
PsuI RGATCY 3 cut(s) 241, 1060, 1130
PvuII CAGCTG 3 cut(s) 260, 399, 905
RsaI GTAC 4 cut(s) 122, 248, 812, 901
RsaNI GTAC 4 cut(s) 121, 247, 811, 900
RseI CAYNNNNRTG 2 cut(s) 326, 1153
SacI GAGCTC 2 cut(s) 671, 917
SacII CCGCGG 1 cut(s) 607
SapI GCTCTTC 1 cut(s) 491
SaqAI TTAA 3 cut(s) 978, 1055, 1083
Sau3AI GATC 7 cut(s) 241, 374, 600, 805, 1060, 1105, 1130
Sau96I GGNCC 3 cut(s) 275, 315, 875
SchI GAGTC 2 cut(s) 311, 972
ScrFI CCNGG 3 cut(s) 385, 527, 1079
SduI GDGCHC 5 cut(s) 392, 441, 503, 671, 917
SfaNI GCATC 2 cut(s) 202, 294
SfcI CTRYAG 1 cut(s) 557
SfoI GGCGCC 2 cut(s) 688, 996
Sfr303I CCGCGG 1 cut(s) 607
SgrBI CCGCGG 1 cut(s) 607
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 326, 1153
SmlI CTYRAG 1 cut(s) 1126
SmoI CTYRAG 1 cut(s) 1126
SphI GCATGC 1 cut(s) 142
Sse9I AATT 6 cut(s) 96, 673, 733, 858, 1066, 1117
SspDI GGCGCC 2 cut(s) 686, 994
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 2 cut(s) 671, 917
StyD4I CCNGG 3 cut(s) 383, 525, 1077
StyI CCWWGG 1 cut(s) 871
TaaI ACNGT 4 cut(s) 394, 1006, 1027, 1164
TaiI ACGT 9 cut(s) 113, 294, 383, 458, 495, 506, 716, 849, 1055
TaqI TCGA 5 cut(s) 159, 377, 477, 518, 792
TaqII GACCGA 1 cut(s) 263
TasI AATT 6 cut(s) 96, 673, 733, 858, 1066, 1117
TatI WGTACW 1 cut(s) 899
TauI GCSGC 5 cut(s) 316, 351, 414, 995, 1037
TfiI GAWTC 4 cut(s) 70, 76, 86, 619
Tru1I TTAA 3 cut(s) 978, 1055, 1083
Tru9I TTAA 3 cut(s) 978, 1055, 1083
TscAI CASTG 3 cut(s) 768, 1018, 1032
TseFI GTSAC 2 cut(s) 50, 748
Tsp45I GTSAC 2 cut(s) 50, 748
TspDTI ATGAA 3 cut(s) 144, 310, 1081
TspRI CASTG 3 cut(s) 768, 1018, 1032
VneI GTGCAC 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 4 cut(s) 96, 733, 858, 1117
XceI RCATGY 3 cut(s) 142, 445, 1158
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XspI CTAG 1 cut(s) 266
ZraI GACGTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.