Rw2G010640

Protein SHI RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
10791033 .. 10793257
2225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G010640.1

Sequence Viewer

Length: 1134 bp
ATGGCTGGATTTTTCTCATTAGGCGCAGGAGGAGGAGGAGGAGGTCGGAGCAGTCACAACCCAGAAAGCCGGAATCAGAATCAACCGGAATCAAGTGAAATTCCGCCAGAGACGTTGTTTTGGTACAAGAATGAAGAGGGCATGCCGTTCAAAGGAAGCTTCGAGCTATGGCAGCACCAGCAGCAGCAACTCCAGCATCACCAGCACCAGCAGCACCAGCTCCAGCAGCTCCAGCTCCAGCAAGATCTGTACGCCTCCGCAGCCGCTCTAGGCGTCGGTCCCAGCAGCATCAACGTCTCCGATGAGTCGTCCTCGCGGCCCTTCATGATGATGAGGCCCTCCTCGTCCGGCGGCGGAGGAGGAGGTGGAGGTGGATCGACGTCCGGGAGCACGGTCAGCTGTCAAGACTGCGGCAACCAAGCCAAGAAAGATTGCGTGCACATGCGGTGCAGGACGTGCTGCAAGAGCCGAGGGTTCGACTGCGCGACCCACGTGAAGAGCACGTGGGTTCCGGCGTCGAAACGCCGGGAGAGGCAGCAGCAGCAACTCACGGCGCTGCAGCAACAGCAACAGCAACAGCAACACACTCAACAAGAAGTTCAAGTGATCCGCGGAGGCGGAGAGAATCCGAAGAGGCTGAGAGAGAGTAGTAACAACAATCCGAATAATCCGAGCTCCAATTCTTCTCTGGGCGCCTGCACTCGCATTATCACAAACACGTCAGGGTTGGAAGTGGGGAATTTTCCAGCAGAAGTGACTTCTCCCGCTGTGTTTCGCTGCGTGAGAGTGAGCTCCATCGACGATGACGAAGATCAGTACGCATATCAGACGGCTGTGAACATCGCCGGCCACGTGTTCAAGGGAATTCTCTACAACCAAGGCCCCGATACTAACTATAATATGAGTACAGCTGGTGAGAGCTCGTCTGGTGGTGGAGGAGGCGGAGGCGGAGGTGGTGGAGGAGTCATTCAACCCCTCAATCTCATCAATGCGGCGCCCACGACAGTTGGCAGTGGCGGTGTAACAGTGGCAGCCGCTTCAGGTTCTGGGACGTTAATGGATCCTAATTCTCTATACCCGGTTAACCCATTCATGGCTTCGGGTACGCAATTCTTCCTACCACCAAGATCTTGA

Protein Analysis

377

Amino Acids

39.84

Weight (kDa)

6.79

Isoelectric Point (pI)

65.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 131 - 296 7.1e-67 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 383
AccB1I GGYRCC 2 cut(s) 692, 994
AccBSI CCGCTC 1 cut(s) 266
AccII CGCG 3 cut(s) 316, 485, 612
AclWI GGATC 4 cut(s) 382, 601, 1055, 1068
AcoI YGGCCR 1 cut(s) 847
AcsI RAATTY 3 cut(s) 99, 739, 864
AcuI CTGAAG 1 cut(s) 1023
AcvI CACGTG 3 cut(s) 493, 504, 853
AcyI GRCGYC 5 cut(s) 273, 380, 515, 693, 995
AfaI GTAC 5 cut(s) 125, 251, 818, 907, 1105
AfiI CCNNNNNNNGG 2 cut(s) 152, 1093
AflIII ACRYGT 2 cut(s) 717, 852
AgsI TTSAA 4 cut(s) 151, 602, 859, 971
AjiI CACGTC 2 cut(s) 456, 720
Alw21I GWGCWC 6 cut(s) 392, 441, 503, 677, 794, 923
Alw26I GTCTC 2 cut(s) 104, 301
Alw44I GTGCAC 1 cut(s) 437
AlwI GGATC 4 cut(s) 382, 601, 1055, 1068
AlwNI CAGNNNCTG 1 cut(s) 1046
AoxI GGCC 4 cut(s) 317, 335, 847, 880
ApaLI GTGCAC 1 cut(s) 437
ApoI RAATTY 3 cut(s) 99, 739, 864
AspLEI GCGC 5 cut(s) 26, 485, 556, 695, 997
AspS9I GGNCC 4 cut(s) 278, 318, 336, 881
AsuC2I CCSGG 3 cut(s) 385, 527, 1079
AsuHPI GGTGA 2 cut(s) 191, 926
AvaII GGWCC 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 441
BamHI GGATCC 1 cut(s) 1060
BanI GGYRCC 2 cut(s) 692, 994
BanII GRGCYC 3 cut(s) 677, 794, 923
BbrPI CACGTG 3 cut(s) 493, 504, 853
Bbv12I GWGCWC 6 cut(s) 392, 441, 503, 677, 794, 923
BccI CCATC 1 cut(s) 803
BceAI ACGGC 3 cut(s) 130, 567, 846
BcnI CCSGG 3 cut(s) 385, 527, 1079
BcoDI GTCTC 2 cut(s) 104, 301
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 557
BfoI RGCGCY 3 cut(s) 557, 696, 998
BglII AGATCT 2 cut(s) 244, 1127
Bme1390I CCNGG 3 cut(s) 385, 527, 1079
Bme18I GGWCC 1 cut(s) 278
BmgBI CACGTC 2 cut(s) 456, 720
BmgT120I GGNCC 4 cut(s) 278, 318, 336, 881
BmiI GGNNCC 6 cut(s) 280, 510, 694, 883, 996, 1062
BmrFI CCNGG 3 cut(s) 385, 527, 1079
BmsI GCATC 2 cut(s) 205, 297
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 4 cut(s) 176, 206, 215, 221
BpuMI CCSGG 3 cut(s) 385, 527, 1079
BsaAI YACGTR 3 cut(s) 493, 504, 853
BsaHI GRCGYC 5 cut(s) 273, 380, 515, 693, 995
BsaJI CCNNGG 3 cut(s) 469, 610, 877
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 1093
Bse118I RCCGGY 1 cut(s) 845
BseDI CCNNGG 3 cut(s) 469, 610, 877
BseLI CCNNNNNNNGG 2 cut(s) 152, 1093
BseMII CTCAG 1 cut(s) 629
BseRI GAGGAG 9 cut(s) 45, 48, 51, 54, 331, 372, 375, 951, 975
BseSI GKGCMC 1 cut(s) 441
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 2 cut(s) 469, 682
Bsh1236I CGCG 3 cut(s) 316, 485, 612
BshFI GGCC 4 cut(s) 319, 337, 849, 882
BshNI GGYRCC 2 cut(s) 692, 994
BsiHKAI GWGCWC 6 cut(s) 392, 441, 503, 677, 794, 923
BsiSI CCGG 8 cut(s) 70, 86, 348, 384, 512, 526, 846, 1079
BslFI GGGAC 2 cut(s) 264, 1063
BslI CCNNNNNNNGG 2 cut(s) 152, 1093
BsmAI GTCTC 2 cut(s) 104, 301
BsmBI CGTCTC 2 cut(s) 104, 301
BsmFI GGGAC 2 cut(s) 264, 1063
BsnI GGCC 4 cut(s) 319, 337, 849, 882
Bsp1286I GDGCHC 6 cut(s) 392, 441, 503, 677, 794, 923
Bsp143I GATC 6 cut(s) 244, 374, 606, 811, 1060, 1127
BspANI GGCC 4 cut(s) 319, 337, 849, 882
BspCNI CTCAG 1 cut(s) 630
BspFNI CGCG 3 cut(s) 316, 485, 612
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 6 cut(s) 280, 510, 694, 883, 996, 1062
BspMAI CTGCAG 1 cut(s) 561
BspPI GGATC 4 cut(s) 382, 601, 1055, 1068
BspQI GCTCTTC 1 cut(s) 491
BspT107I GGYRCC 2 cut(s) 692, 994
BsrBI CCGCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 845
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 3 cut(s) 469, 610, 877
BssMI GATC 6 cut(s) 244, 374, 606, 811, 1060, 1127
BssNI GRCGYC 5 cut(s) 273, 380, 515, 693, 995
BssT1I CCWWGG 1 cut(s) 877
Bst4CI ACNGT 3 cut(s) 394, 1006, 1027
Bst6I CTCTTC 3 cut(s) 129, 491, 626
BstACI GRCGYC 5 cut(s) 273, 380, 515, 693, 995
BstAPI GCANNNNNTGC 1 cut(s) 456
BstBAI YACGTR 3 cut(s) 493, 504, 853
BstC8I GCNNGC 4 cut(s) 143, 437, 697, 847
BstDEI CTNAG 1 cut(s) 638
BstDSI CCRYGG 1 cut(s) 610
BstFNI CGCG 3 cut(s) 316, 485, 612
BstH2I RGCGCY 3 cut(s) 557, 696, 998
BstHHI GCGC 5 cut(s) 26, 485, 556, 695, 997
BstKTI GATC 6 cut(s) 247, 377, 609, 814, 1063, 1130
BstMAI GTCTC 2 cut(s) 104, 301
BstMBI GATC 6 cut(s) 244, 374, 606, 811, 1060, 1127
BstNSI RCATGY 2 cut(s) 145, 445
BstSCI CCNGG 3 cut(s) 383, 525, 1077
BstSFI CTRYAG 1 cut(s) 557
BstSLI GKGCMC 1 cut(s) 441
BstUI CGCG 3 cut(s) 316, 485, 612
BstX2I RGATCY 3 cut(s) 244, 1060, 1127
BstYI RGATCY 3 cut(s) 244, 1060, 1127
BsuRI GGCC 4 cut(s) 319, 337, 849, 882
BtgI CCRYGG 1 cut(s) 610
BtgZI GCGATG 1 cut(s) 826
BtrI CACGTC 2 cut(s) 456, 720
BtsI GCAGTG 1 cut(s) 1018
BtsIMutI CAGTG 2 cut(s) 1018, 1032
Cac8I GCNNGC 4 cut(s) 143, 437, 697, 847
CaiI CAGNNNCTG 1 cut(s) 1046
CciI TCATGA 1 cut(s) 324
CfoI GCGC 5 cut(s) 26, 485, 556, 695, 997
Cfr10I RCCGGY 1 cut(s) 845
Cfr13I GGNCC 4 cut(s) 278, 318, 336, 881
Cfr42I CCGCGG 1 cut(s) 613
CseI GACGC 2 cut(s) 262, 504
Csp6I GTAC 5 cut(s) 124, 250, 817, 906, 1104
CspCI CAANNNNNGTGG 2 cut(s) 988, 1023
CviAII CATG 4 cut(s) 142, 325, 442, 1093
CviQI GTAC 5 cut(s) 124, 250, 817, 906, 1104
DdeI CTNAG 1 cut(s) 638
DinI GGCGCC 2 cut(s) 694, 996
DpnI GATC 6 cut(s) 246, 376, 608, 813, 1062, 1129
DpnII GATC 6 cut(s) 244, 374, 606, 811, 1060, 1127
EaeI YGGCCR 1 cut(s) 847
Eam1104I CTCTTC 3 cut(s) 129, 491, 626
EarI CTCTTC 3 cut(s) 129, 491, 626
EciI GGCGGA 5 cut(s) 93, 369, 633, 957, 963
Ecl136II GAGCTC 3 cut(s) 675, 792, 921
Eco130I CCWWGG 1 cut(s) 877
Eco24I GRGCYC 3 cut(s) 677, 794, 923
Eco47I GGWCC 1 cut(s) 278
Eco53kI GAGCTC 3 cut(s) 675, 792, 921
Eco57I CTGAAG 1 cut(s) 1023
Eco72I CACGTG 3 cut(s) 493, 504, 853
EcoICRI GAGCTC 3 cut(s) 675, 792, 921
EcoO109I RGGNCCY 2 cut(s) 336, 881
EcoRI GAATTC 1 cut(s) 864
EcoT14I CCWWGG 1 cut(s) 877
EcoT38I GRGCYC 3 cut(s) 677, 794, 923
EgeI GGCGCC 2 cut(s) 694, 996
EheI GGCGCC 2 cut(s) 694, 996
ErhI CCWWGG 1 cut(s) 877
Esp3I CGTCTC 2 cut(s) 104, 301
FaeI CATG 4 cut(s) 145, 328, 445, 1096
FaiI YATR 9 cut(s) 143, 169, 326, 443, 823, 897, 902, 1075, 1094
FaqI GGGAC 2 cut(s) 264, 1063
FatI CATG 4 cut(s) 141, 324, 441, 1092
FauI CCCGC 1 cut(s) 772
FriOI GRGCYC 3 cut(s) 677, 794, 923
FspBI CTAG 1 cut(s) 269
GlaI GCGC 5 cut(s) 25, 484, 555, 694, 996
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 4 cut(s) 176, 206, 215, 221
HaeII RGCGCY 3 cut(s) 557, 696, 998
HaeIII GGCC 4 cut(s) 319, 337, 849, 882
HapII CCGG 8 cut(s) 70, 86, 348, 384, 512, 526, 846, 1079
HgaI GACGC 2 cut(s) 262, 504
HhaI GCGC 5 cut(s) 26, 485, 556, 695, 997
Hin1I GRCGYC 5 cut(s) 273, 380, 515, 693, 995
Hin1II CATG 4 cut(s) 145, 328, 445, 1096
Hin6I GCGC 5 cut(s) 24, 483, 554, 693, 995
HinP1I GCGC 5 cut(s) 24, 483, 554, 693, 995
HincII GTYRAC 1 cut(s) 1084
HindII GTYRAC 1 cut(s) 1084
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 6 cut(s) 73, 79, 89, 305, 625, 963
HpaI GTTAAC 1 cut(s) 1084
HpaII CCGG 8 cut(s) 70, 86, 348, 384, 512, 526, 846, 1079
HphI GGTGA 2 cut(s) 191, 926
Hpy166II GTNNAC 3 cut(s) 439, 838, 1084
Hpy188I TCNGA 7 cut(s) 48, 78, 301, 630, 663, 672, 828
Hpy188III TCNNGA 3 cut(s) 325, 404, 1131
Hpy8I GTNNAC 3 cut(s) 439, 838, 1084
Hpy99I CGWCG 4 cut(s) 278, 382, 520, 803
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 3 cut(s) 394, 1006, 1027
HpyCH4IV ACGT 9 cut(s) 113, 294, 380, 455, 492, 503, 719, 852, 1052
HpyCH4V TGCA 5 cut(s) 439, 450, 462, 559, 699
HpyF3I CTNAG 1 cut(s) 638
HpySE526I ACGT 9 cut(s) 113, 294, 380, 455, 492, 503, 719, 852, 1052
Hsp92I GRCGYC 5 cut(s) 273, 380, 515, 693, 995
Hsp92II CATG 4 cut(s) 145, 328, 445, 1096
HspAI GCGC 5 cut(s) 24, 483, 554, 693, 995
KasI GGCGCC 2 cut(s) 692, 994
KroI GCCGGC 1 cut(s) 845
KroNI GCCGGC 1 cut(s) 847
KspAI GTTAAC 1 cut(s) 1084
KspI CCGCGG 1 cut(s) 613
Kzo9I GATC 6 cut(s) 244, 374, 606, 811, 1060, 1127
LguI GCTCTTC 1 cut(s) 491
LmnI GCTCC 7 cut(s) 48, 225, 234, 240, 387, 680, 797
LweI GCATC 2 cut(s) 205, 297
MaeI CTAG 1 cut(s) 269
MaeII ACGT 9 cut(s) 113, 294, 380, 455, 492, 503, 719, 852, 1052
MaeIII GTNAC 4 cut(s) 53, 650, 754, 1021
MalI GATC 6 cut(s) 246, 376, 608, 813, 1062, 1129
MbiI CCGCTC 1 cut(s) 266
MboI GATC 6 cut(s) 244, 374, 606, 811, 1060, 1127
MboII GAAGA 6 cut(s) 146, 508, 643, 675, 821, 1105
MflI RGATCY 3 cut(s) 244, 1060, 1127
MhlI GDGCHC 6 cut(s) 392, 441, 503, 677, 794, 923
MluCI AATT 6 cut(s) 99, 679, 739, 864, 1066, 1109
Mly113I GGCGCC 2 cut(s) 693, 995
MlyI GAGTC 2 cut(s) 314, 972
MmeI TCCRAC 2 cut(s) 26, 708
MroNI GCCGGC 1 cut(s) 845
MseI TTAA 2 cut(s) 1055, 1083
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 4 cut(s) 399, 612, 767, 911
MspI CCGG 8 cut(s) 70, 86, 348, 384, 512, 526, 846, 1079
MspR9I CCNGG 3 cut(s) 385, 527, 1079
MvnI CGCG 3 cut(s) 316, 485, 612
NaeI GCCGGC 1 cut(s) 847
NarI GGCGCC 2 cut(s) 693, 995
NciI CCSGG 3 cut(s) 385, 527, 1079
NdeII GATC 6 cut(s) 244, 374, 606, 811, 1060, 1127
NgoMIV GCCGGC 1 cut(s) 845
NlaIII CATG 4 cut(s) 145, 328, 445, 1096
NlaIV GGNNCC 6 cut(s) 280, 510, 694, 883, 996, 1062
NmeAIII GCCGAG 1 cut(s) 494
NmuCI GTSAC 2 cut(s) 53, 754
NspI RCATGY 2 cut(s) 145, 445
PaeI GCATGC 1 cut(s) 145
PagI TCATGA 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 491
PcsI WCGNNNNNNNCGW 2 cut(s) 804, 849
PdiI GCCGGC 1 cut(s) 847
PfeI GAWTC 4 cut(s) 73, 79, 89, 625
PfoI TCCNGGA 1 cut(s) 383
PleI GAGTC 2 cut(s) 313, 971
PluTI GGCGCC 2 cut(s) 696, 998
PmaCI CACGTG 3 cut(s) 493, 504, 853
PmlI CACGTG 3 cut(s) 493, 504, 853
PpsI GAGTC 2 cut(s) 313, 971
Ppu21I YACGTR 3 cut(s) 493, 504, 853
Psp124BI GAGCTC 3 cut(s) 677, 794, 923
PspCI CACGTG 3 cut(s) 493, 504, 853
PspFI CCCAGC 1 cut(s) 281
PspN4I GGNNCC 6 cut(s) 280, 510, 694, 883, 996, 1062
PspPI GGNCC 4 cut(s) 278, 318, 336, 881
PstI CTGCAG 1 cut(s) 561
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 3 cut(s) 244, 1060, 1127
PvuII CAGCTG 2 cut(s) 399, 911
RsaI GTAC 5 cut(s) 125, 251, 818, 907, 1105
RsaNI GTAC 5 cut(s) 124, 250, 817, 906, 1104
RseI CAYNNNNRTG 1 cut(s) 329
SacI GAGCTC 3 cut(s) 677, 794, 923
SacII CCGCGG 1 cut(s) 613
SapI GCTCTTC 1 cut(s) 491
SaqAI TTAA 2 cut(s) 1055, 1083
Sau3AI GATC 6 cut(s) 244, 374, 606, 811, 1060, 1127
Sau96I GGNCC 4 cut(s) 278, 318, 336, 881
SchI GAGTC 2 cut(s) 314, 972
ScrFI CCNGG 3 cut(s) 385, 527, 1079
SduI GDGCHC 6 cut(s) 392, 441, 503, 677, 794, 923
SfaNI GCATC 2 cut(s) 205, 297
SfcI CTRYAG 1 cut(s) 557
SfoI GGCGCC 2 cut(s) 694, 996
Sfr303I CCGCGG 1 cut(s) 613
SgrBI CCGCGG 1 cut(s) 613
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 329
SphI GCATGC 1 cut(s) 145
Sse9I AATT 6 cut(s) 99, 679, 739, 864, 1066, 1109
SspDI GGCGCC 2 cut(s) 692, 994
SspMI CTAG 1 cut(s) 269
SstI GAGCTC 3 cut(s) 677, 794, 923
StyD4I CCNGG 3 cut(s) 383, 525, 1077
StyI CCWWGG 1 cut(s) 877
TaaI ACNGT 3 cut(s) 394, 1006, 1027
TaiI ACGT 9 cut(s) 116, 297, 383, 458, 495, 506, 722, 855, 1055
TaqI TCGA 5 cut(s) 162, 377, 477, 518, 798
TaqII GACCGA 1 cut(s) 266
TasI AATT 6 cut(s) 99, 679, 739, 864, 1066, 1109
TatI WGTACW 1 cut(s) 905
TauI GCSGC 6 cut(s) 266, 319, 354, 414, 995, 1037
TfiI GAWTC 4 cut(s) 73, 79, 89, 625
Tru1I TTAA 2 cut(s) 1055, 1083
Tru9I TTAA 2 cut(s) 1055, 1083
TscAI CASTG 2 cut(s) 1018, 1032
TseFI GTSAC 2 cut(s) 53, 754
Tsp45I GTSAC 2 cut(s) 53, 754
TspDTI ATGAA 3 cut(s) 147, 313, 1081
TspRI CASTG 2 cut(s) 1018, 1032
VneI GTGCAC 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 3 cut(s) 99, 739, 864
XceI RCATGY 2 cut(s) 145, 445
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XspI CTAG 1 cut(s) 269
ZraI GACGTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.