Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009050

Physical Location & Seq

Genomic Coordinates Forward (+)

16202942 .. 16204232

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAGGTCGTCGTCAGGAGGAGGAGGAAGCGGAGGAGTCGCCAGCTGTCAAGACTGCGGGAACCAAGCAAAGAAAGACTGCATACACATGAGGTGCAGGACTTGCTGCAAGAGTCGAGGGTTCGACTGTACGACCCATGTCAAGAGCACGTGGGTCCCGGCGTCGAAACGCCGTGAGCGGCAGCAGCAGGTCACCGCCTTGCAGCAACAACACCATCACCAACACCAAGATCATATGCAACACCACCATCACCATCAACAGCAGCAGCTTCAAGTGATTCGAGGAGAAAATTCGAAAAGACTCAGAGAAAATCCGAGTACGAAACCCTCTCGTCGTATTCTCACAAACACAAACACTTCAGAGTTGGATGTGGTGAATTTCCCGCCGGAAGTGAGCTCACCTGCGGTATTTCGCTGCGTGAAAGTGAGCGCAATCGACGAGAAGGATCAGTACGCGTACCAGACGGCTGTGAACATCGCAGGCCATTTGTTCACAGGAATTCTTTTCGACCAAGGACCCGAATCCCCCAACTACAATATGAACATGGCAGCTGAAACCTCGTCTGCTGGTGGAGTTAATTCCCAACCGCTCAATCTCGTCGCGGGAGCCACCACCGCCGTTAACACAGCTTCCATTGACGGTGGTGGAGGCCATGAGGGAGTGGCAGTGGCGGGTTCGACGACTGTTATAGATCCTTCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

235

Amino Acids

25.32

Weight (kDa)

8.66

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF702	PF05142	14 - 174	1.3e-61	Domain of unknown function (DUF702)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51060 AT5G66350 AT5G66350 AT5G66350
fragaria_vesca	FvH4_1g12410
malus_domestica	MD02G1137000.v1.1 MD15G1250700.v1.1
prunus_persica	Prupe.7G163600_v2.0.a1 Prupe.7G163600_v2.0.a1 Prupe.7G163600_v2.0.a1
pyrus_communis	pycom02g10840 pycom15g22110
rosa_chinensis	RchiOBHm_Chr2g0100271
rosa_laevigata	RLG00000016951
rosa_multiflora	Rmu_sc0002547.1_g000016
rosa_roxburghii	Rroxscaffold_2G00142430
rosa_rugosa	Rorug02G0087000
rosa_samantha	Rh2AG136000 Rh2BG139600 Rh2CG141300 Rh2DG141500
rosa_wichuraiana	Rw2G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	409
Acc36I	ACCTGC	2 cut(s)	178, 409
AccBSI	CCGCTC	2 cut(s)	178, 589
AccII	CGCG	2 cut(s)	455, 602
AclWI	GGATC	2 cut(s)	453, 686
AcsI	RAATTY	3 cut(s)	289, 376, 498
AcuI	CTGAAG	1 cut(s)	342
AcvI	CACGTG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	4 cut(s)	130, 319, 452, 458
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	5 cut(s)	45, 268, 396, 551, 629
AluI	AGCT	5 cut(s)	45, 268, 396, 551, 629
Alw21I	GWGCWC	2 cut(s)	149, 398
AlwI	GGATC	2 cut(s)	453, 686
AoxI	GGCC	2 cut(s)	481, 649
ApeKI	GCWGC	8 cut(s)	105, 181, 184, 202, 262, 265, 414, 548
ApoI	RAATTY	3 cut(s)	289, 376, 498
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	154, 515
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	5 cut(s)	184, 209, 242, 385, 390
AsuII	TTCGAA	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	154, 515
BanII	GRGCYC	1 cut(s)	398
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
BbrPI	CACGTG	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	149, 398
BbvI	GCAGC	8 cut(s)	92, 193, 196, 214, 274, 277, 401, 560
BccI	CCATC	3 cut(s)	222, 255, 261
BceAI	ACGGC	3 cut(s)	156, 480, 602
BcnI	CCSGG	1 cut(s)	158
BfuAI	ACCTGC	2 cut(s)	178, 409
BisI	GCNGC	9 cut(s)	106, 179, 182, 185, 203, 263, 266, 415, 549
BlsI	GCNGC	9 cut(s)	107, 180, 183, 186, 204, 264, 267, 416, 550
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	2 cut(s)	154, 515
BmgT120I	GGNCC	2 cut(s)	154, 515
BmiI	GGNNCC	5 cut(s)	62, 155, 156, 517, 607
BmrFI	CCNGG	1 cut(s)	158
BoxI	GACNNNNGTC	1 cut(s)	137
Bpu14I	TTCGAA	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	316
BseRI	GAGGAG	4 cut(s)	33, 36, 48, 297
BseXI	GCAGC	8 cut(s)	92, 193, 196, 214, 274, 277, 401, 560
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	2 cut(s)	455, 602
BshFI	GGCC	2 cut(s)	483, 651
BsiHKAI	GWGCWC	2 cut(s)	149, 398
BsiSI	CCGG	2 cut(s)	158, 386
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	483, 651
Bsp119I	TTCGAA	1 cut(s)	293
Bsp1286I	GDGCHC	2 cut(s)	149, 398
Bsp143I	GATC	3 cut(s)	229, 445, 691
BspANI	GGCC	2 cut(s)	483, 651
BspCNI	CTCAG	1 cut(s)	315
BspFNI	CGCG	2 cut(s)	455, 602
BspLI	GGNNCC	5 cut(s)	62, 155, 156, 517, 607
BspMI	ACCTGC	2 cut(s)	178, 409
BspPI	GGATC	2 cut(s)	453, 686
BspT104I	TTCGAA	1 cut(s)	293
BsrBI	CCGCTC	2 cut(s)	178, 589
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	3 cut(s)	229, 445, 691
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	511
Bst4CI	ACNGT	3 cut(s)	128, 641, 685
BstACI	GRCGYC	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstBAI	YACGTR	1 cut(s)	150
BstBI	TTCGAA	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	43, 481
BstDEI	CTNAG	1 cut(s)	302
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	2 cut(s)	455, 602
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	3 cut(s)	232, 448, 694
BstMBI	GATC	3 cut(s)	229, 445, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 184, 614
BstPAI	GACNNNNGTC	1 cut(s)	137
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	2 cut(s)	455, 602
BstV1I	GCAGC	8 cut(s)	92, 193, 196, 214, 274, 277, 401, 560
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BsuRI	GGCC	2 cut(s)	483, 651
BtgZI	GCGATG	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	1 cut(s)	672
BveI	ACCTGC	2 cut(s)	178, 409
Cac8I	GCNNGC	2 cut(s)	43, 481
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	154, 515
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	4 cut(s)	129, 318, 451, 457
CviAII	CATG	4 cut(s)	88, 137, 544, 653
CviJI	RGCY	9 cut(s)	45, 268, 396, 467, 483, 551, 608, 629, 651
CviKI_1	RGCY	9 cut(s)	45, 268, 396, 467, 483, 551, 608, 629, 651
CviQI	GTAC	4 cut(s)	129, 318, 451, 457
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	3 cut(s)	231, 447, 693
DpnII	GATC	3 cut(s)	229, 445, 691
Ecl136II	GAGCTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	154, 515
Eco53kI	GAGCTC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	342
Eco72I	CACGTG	1 cut(s)	150
Eco91I	GGTNACC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	396
EcoO109I	RGGNCCY	2 cut(s)	154, 515
EcoO65I	GGTNACC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	4 cut(s)	91, 140, 547, 656
FaiI	YATR	9 cut(s)	83, 89, 138, 234, 236, 539, 545, 654, 689
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	4 cut(s)	87, 136, 543, 652
FauI	CCCGC	4 cut(s)	50, 390, 595, 664
FauNDI	CATATG	1 cut(s)	234
Fnu4HI	GCNGC	9 cut(s)	106, 179, 182, 185, 203, 263, 266, 415, 549
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	9 cut(s)	106, 179, 182, 185, 203, 263, 266, 415, 549
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	9 cut(s)	106, 179, 182, 185, 203, 263, 266, 415, 549
HaeIII	GGCC	2 cut(s)	483, 651
HapII	CCGG	2 cut(s)	158, 386
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	431
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	4 cut(s)	91, 140, 547, 656
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	5 cut(s)	36, 112, 277, 300, 521
HpaI	GTTAAC	1 cut(s)	622
HpaII	CCGG	2 cut(s)	158, 386
HphI	GGTGA	5 cut(s)	184, 209, 242, 385, 390
Hpy166II	GTNNAC	3 cut(s)	472, 492, 622
Hpy188I	TCNGA	3 cut(s)	305, 315, 361
Hpy188III	TCNNGA	4 cut(s)	15, 50, 142, 699
Hpy8I	GTNNAC	3 cut(s)	472, 492, 622
Hpy99I	CGWCG	6 cut(s)	13, 166, 336, 440, 602, 682
HpyAV	CCTTC	2 cut(s)	436, 705
HpyCH4III	ACNGT	3 cut(s)	128, 641, 685
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	5 cut(s)	81, 96, 108, 202, 238
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 184, 614
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	149
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	4 cut(s)	91, 140, 547, 656
HspAI	GCGC	1 cut(s)	429
KflI	GGGWCCC	1 cut(s)	154
KspAI	GTTAAC	1 cut(s)	622
Kzo9I	GATC	3 cut(s)	229, 445, 691
LmnI	GCTCC	1 cut(s)	605
Lsp1109I	GCAGC	8 cut(s)	92, 193, 196, 214, 274, 277, 401, 560
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	231, 447, 693
MbiI	CCGCTC	2 cut(s)	178, 589
MboI	GATC	3 cut(s)	229, 445, 691
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	2 cut(s)	149, 398
MluCI	AATT	4 cut(s)	289, 376, 498, 577
MluI	ACGCGT	1 cut(s)	453
MlyI	GAGTC	3 cut(s)	45, 121, 294
MmeI	TCCRAC	1 cut(s)	345
MseI	TTAA	2 cut(s)	576, 621
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	2 cut(s)	45, 551
MspI	CCGG	2 cut(s)	158, 386
MspR9I	CCNGG	1 cut(s)	158
MvnI	CGCG	2 cut(s)	455, 602
MwoI	GCNNNNNNNGC	3 cut(s)	102, 184, 614
NciI	CCSGG	1 cut(s)	158
NdeI	CATATG	1 cut(s)	234
NdeII	GATC	3 cut(s)	229, 445, 691
NlaIII	CATG	4 cut(s)	91, 140, 547, 656
NlaIV	GGNNCC	5 cut(s)	62, 155, 156, 517, 607
NmuCI	GTSAC	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	293
PaqCI	CACCTGC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	277, 521
PkrI	GCNGC	9 cut(s)	107, 180, 183, 186, 204, 264, 267, 416, 550
PleI	GAGTC	3 cut(s)	44, 120, 294
PmaCI	CACGTG	1 cut(s)	150
PmlI	CACGTG	1 cut(s)	150
PpsI	GAGTC	3 cut(s)	44, 120, 294
Ppu21I	YACGTR	1 cut(s)	150
PpuMI	RGGWCCY	2 cut(s)	154, 515
PshAI	GACNNNNGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	398
Psp5II	RGGWCCY	2 cut(s)	154, 515
PspCI	CACGTG	1 cut(s)	150
PspEI	GGTNACC	1 cut(s)	190
PspN4I	GGNNCC	5 cut(s)	62, 155, 156, 517, 607
PspPI	GGNCC	2 cut(s)	154, 515
PspPPI	RGGWCCY	2 cut(s)	154, 515
PsuI	RGATCY	1 cut(s)	691
PvuII	CAGCTG	2 cut(s)	45, 551
RsaI	GTAC	4 cut(s)	130, 319, 452, 458
RsaNI	GTAC	4 cut(s)	129, 318, 451, 457
RseI	CAYNNNNRTG	1 cut(s)	86
SacI	GAGCTC	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	576, 621
SatI	GCNGC	9 cut(s)	106, 179, 182, 185, 203, 263, 266, 415, 549
Sau3AI	GATC	3 cut(s)	229, 445, 691
Sau96I	GGNCC	2 cut(s)	154, 515
SchI	GAGTC	3 cut(s)	45, 121, 294
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	149, 398
SfuI	TTCGAA	1 cut(s)	293
SinI	GGWCC	2 cut(s)	154, 515
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	4 cut(s)	289, 376, 498, 577
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	128, 641, 685
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	9 cut(s)	115, 123, 164, 280, 293, 435, 507, 677, 700
TasI	AATT	4 cut(s)	289, 376, 498, 577
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	2 cut(s)	277, 521
Tru1I	TTAA	2 cut(s)	576, 621
Tru9I	TTAA	2 cut(s)	576, 621
TscAI	CASTG	1 cut(s)	672
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	8 cut(s)	105, 181, 184, 202, 262, 265, 414, 548
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	554
TspRI	CASTG	1 cut(s)	672
VpaK11BI	GGWCC	2 cut(s)	154, 515
XapI	RAATTY	3 cut(s)	289, 376, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.