Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009050

Physical Location & Seq

Genomic Coordinates Forward (+)

6911391 .. 6912524

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0087000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCGTCATCGCCGGCCGCCCAAACCGTCGTCGAGCACATCGTCCTCTTCAAGGTCAGAGACAACGCCGACCCCTCCAAGGTCAACGCATGGGTCAACGGCCTCAACGGCCTGAGCTCGCTTGATCTTACTCTCCACCTCACCGCCGGTCCCCTCCTCCGCACCCGATCCTCCCCTTTCGCCTTCACCCACCTCCTCCACAGCCGCTACAAGACAAAAGACGACCTCGCCGCCTATACCGTCCACCCGGGCCACATCAGCGTCGTCAAGGATTTAGGCCTCCCTATCGTTGATGACATCATGGCCGTTGACTGGGTCGCGGATGGGCTGACGGGCCCTGTGGCCTTGTCCCCCGGGTCCGCGATCCGGGTCGCGGTTTTGAAGTTGAAGGAGGAGTTGGGGGAGGCGGCTAAAGGTGAGGTTTTGGAGGTGATTAGAGGAATTAAGGGGAAGTTGGGAGAGGCGGGGCAGATTAGCGTCGGAGAGAACTTCTCGCCGGGGAGGGCCAGAGGGTATTCGATCGCGTCGGTGGCGGTTTTTAAGGGAGTGAGCGAGATGGAGGAGGTGGATTCGAAGCAGGAGATGGAGGAGGTGGAGAAGGACAAGGTTAGGGAGTATTTGGATAGCGTGATTGTTCTTGATTATGTGGTTCCGTCCCTGCAAGTGTCTGGAGATACATTATCGGATTCCGGTAATTCATACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

235

Amino Acids

25.22

Weight (kDa)

5.16

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	11 - 106	3.7e-18	Stress responsive A/B Barrel Domain
Dabb	PF07876	124 - 217	2.9e-13	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51060 AT5G66350 AT5G66350 AT5G66350
fragaria_vesca	FvH4_1g12410
malus_domestica	MD02G1137000.v1.1 MD15G1250700.v1.1
prunus_persica	Prupe.7G163600_v2.0.a1 Prupe.7G163600_v2.0.a1 Prupe.7G163600_v2.0.a1
pyrus_communis	pycom02g10840 pycom15g22110
rosa_chinensis	RchiOBHm_Chr2g0100271
rosa_laevigata	RLG00000016951
rosa_multiflora	Rmu_sc0002547.1_g000016
rosa_roxburghii	Rroxscaffold_2G00142430
rosa_rugosa	Rorug02G0087000
rosa_samantha	Rh2AG136000 Rh2BG139600 Rh2CG141300 Rh2DG141500
rosa_wichuraiana	Rw2G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	320, 362, 374, 524
AclWI	GGATC	2 cut(s)	162, 358
AcoI	YGGCCR	2 cut(s)	15, 303
AfiI	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
AgsI	TTSAA	3 cut(s)	52, 382, 388
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw21I	GWGCWC	2 cut(s)	39, 119
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	162, 358
Ama87I	CYCGRG	2 cut(s)	247, 353
AoxI	GGCC	9 cut(s)	15, 100, 109, 250, 277, 303, 334, 342, 504
ApaI	GGGCCC	1 cut(s)	338
AspS9I	GGNCC	6 cut(s)	149, 250, 334, 335, 357, 504
AsuC2I	CCSGG	6 cut(s)	248, 249, 354, 355, 368, 498
AsuHPI	GGTGA	4 cut(s)	133, 178, 428, 442
AsuII	TTCGAA	1 cut(s)	572
AvaI	CYCGRG	2 cut(s)	247, 353
AvaII	GGWCC	2 cut(s)	149, 357
BaeGI	GKGCMC	1 cut(s)	338
BanII	GRGCYC	2 cut(s)	119, 338
Bbv12I	GWGCWC	2 cut(s)	39, 119
BccI	CCATC	3 cut(s)	317, 550, 577
BceAI	ACGGC	3 cut(s)	115, 124, 290
BcnI	CCSGG	6 cut(s)	248, 249, 354, 355, 368, 498
BcoDI	GTCTC	1 cut(s)	54
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	4 cut(s)	18, 205, 231, 408
BlsI	GCNGC	4 cut(s)	19, 206, 232, 409
Bme1390I	CCNGG	6 cut(s)	248, 249, 354, 355, 368, 498
Bme18I	GGWCC	2 cut(s)	149, 357
BmeT110I	CYCGRG	2 cut(s)	247, 353
BmgT120I	GGNCC	6 cut(s)	149, 250, 334, 335, 357, 504
BmiI	GGNNCC	4 cut(s)	151, 336, 358, 651
BmrFI	CCNGG	6 cut(s)	248, 249, 354, 355, 368, 498
BmrI	ACTGGG	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	322
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	1 cut(s)	690
Bpu10I	CCTNAGC	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	572
BpuMI	CCSGG	6 cut(s)	248, 249, 354, 355, 368, 498
BsaJI	CCNNGG	5 cut(s)	78, 247, 352, 353, 497
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
Bse118I	RCCGGY	2 cut(s)	13, 146
Bse1I	ACTGG	1 cut(s)	317
BseDI	CCNNGG	5 cut(s)	78, 247, 352, 353, 497
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	5 cut(s)	146, 185, 407, 575, 602
BseSI	GKGCMC	1 cut(s)	338
BseX3I	CGGCCG	1 cut(s)	15
Bsh1236I	CGCG	4 cut(s)	320, 362, 374, 524
Bsh1285I	CGRYCG	2 cut(s)	18, 522
BshFI	GGCC	9 cut(s)	17, 102, 111, 252, 279, 305, 336, 344, 506
BsiEI	CGRYCG	2 cut(s)	18, 522
BsiHKAI	GWGCWC	2 cut(s)	39, 119
BsiHKCI	CYCGRG	2 cut(s)	247, 353
BsiSI	CCGG	7 cut(s)	14, 147, 248, 354, 367, 497, 690
BslFI	GGGAC	3 cut(s)	135, 334, 640
BslI	CCNNNNNNNGG	5 cut(s)	52, 79, 312, 366, 373
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	3 cut(s)	135, 334, 640
BsnI	GGCC	9 cut(s)	17, 102, 111, 252, 279, 305, 336, 344, 506
BsoBI	CYCGRG	2 cut(s)	247, 353
Bsp119I	TTCGAA	1 cut(s)	572
Bsp120I	GGGCCC	1 cut(s)	334
Bsp1286I	GDGCHC	3 cut(s)	39, 119, 338
Bsp143I	GATC	4 cut(s)	124, 167, 363, 519
BspANI	GGCC	9 cut(s)	17, 102, 111, 252, 279, 305, 336, 344, 506
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	4 cut(s)	320, 362, 374, 524
BspLI	GGNNCC	4 cut(s)	151, 336, 358, 651
BspPI	GGATC	2 cut(s)	162, 358
BspT104I	TTCGAA	1 cut(s)	572
BsrFI	RCCGGY	2 cut(s)	13, 146
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	2 cut(s)	13, 146
BssECI	CCNNGG	5 cut(s)	78, 247, 352, 353, 497
BssMI	GATC	4 cut(s)	124, 167, 363, 519
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	28, 241
Bst6I	CTCTTC	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	15, 119
BstDEI	CTNAG	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	4 cut(s)	320, 362, 374, 524
BstKTI	GATC	4 cut(s)	127, 170, 366, 522
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	4 cut(s)	124, 167, 363, 519
BstMCI	CGRYCG	2 cut(s)	18, 522
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 258, 530
BstSCI	CCNGG	6 cut(s)	246, 247, 352, 353, 366, 496
BstSLI	GKGCMC	1 cut(s)	338
BstUI	CGCG	4 cut(s)	320, 362, 374, 524
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	9 cut(s)	17, 102, 111, 252, 279, 305, 336, 344, 506
BtsCI	GGATG	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	15, 119
Cfr10I	RCCGGY	2 cut(s)	13, 146
Cfr13I	GGNCC	6 cut(s)	149, 250, 334, 335, 357, 504
Cfr9I	CCCGGG	2 cut(s)	247, 353
CseI	GACGC	3 cut(s)	250, 466, 513
CviAII	CATG	2 cut(s)	90, 301
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	4 cut(s)	126, 169, 365, 521
DpnII	GATC	4 cut(s)	124, 167, 363, 519
EaeI	YGGCCR	2 cut(s)	15, 303
EagI	CGGCCG	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	279
Eco24I	GRGCYC	2 cut(s)	119, 338
Eco47I	GGWCC	2 cut(s)	149, 357
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	117
Eco88I	CYCGRG	2 cut(s)	247, 353
EcoICRI	GAGCTC	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	119, 338
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	93, 304
FaiI	YATR	5 cut(s)	91, 237, 302, 645, 700
FaqI	GGGAC	3 cut(s)	135, 334, 640
FatI	CATG	2 cut(s)	89, 300
FauI	CCCGC	1 cut(s)	457
Fnu4HI	GCNGC	4 cut(s)	18, 205, 231, 408
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	2 cut(s)	119, 338
Fsp4HI	GCNGC	4 cut(s)	18, 205, 231, 408
GluI	GCNGC	4 cut(s)	18, 205, 231, 408
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	9 cut(s)	17, 102, 111, 252, 279, 305, 336, 344, 506
HapII	CCGG	7 cut(s)	14, 147, 248, 354, 367, 497, 690
HgaI	GACGC	3 cut(s)	250, 466, 513
Hin1II	CATG	2 cut(s)	93, 304
HincII	GTYRAC	3 cut(s)	85, 97, 310
HindII	GTYRAC	3 cut(s)	85, 97, 310
HinfI	GANTC	2 cut(s)	569, 686
HpaII	CCGG	7 cut(s)	14, 147, 248, 354, 367, 497, 690
HphI	GGTGA	4 cut(s)	133, 178, 428, 442
Hpy166II	GTNNAC	4 cut(s)	85, 97, 244, 310
Hpy188I	TCNGA	3 cut(s)	59, 482, 685
Hpy188III	TCNNGA	2 cut(s)	638, 669
Hpy8I	GTNNAC	4 cut(s)	85, 97, 244, 310
Hpy99I	CGWCG	5 cut(s)	32, 35, 266, 482, 529
HpyAV	CCTTC	3 cut(s)	193, 382, 592
HpyCH4III	ACNGT	2 cut(s)	28, 241
HpyCH4V	TGCA	1 cut(s)	661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 258, 530
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	93, 304
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	124, 167, 363, 519
MalI	GATC	4 cut(s)	126, 169, 365, 521
MboI	GATC	4 cut(s)	124, 167, 363, 519
MboII	GAAGA	1 cut(s)	40
MhlI	GDGCHC	3 cut(s)	39, 119, 338
MluCI	AATT	2 cut(s)	441, 694
MmeI	TCCRAC	1 cut(s)	460
MroNI	GCCGGC	1 cut(s)	13
MseI	TTAA	3 cut(s)	444, 540, 706
MspI	CCGG	7 cut(s)	14, 147, 248, 354, 367, 497, 690
MspR9I	CCNGG	6 cut(s)	248, 249, 354, 355, 368, 498
MvnI	CGCG	4 cut(s)	320, 362, 374, 524
MwoI	GCNNNNNNNGC	3 cut(s)	108, 258, 530
NaeI	GCCGGC	1 cut(s)	15
NciI	CCSGG	6 cut(s)	248, 249, 354, 355, 368, 498
NdeII	GATC	4 cut(s)	124, 167, 363, 519
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	93, 304
NlaIV	GGNNCC	4 cut(s)	151, 336, 358, 651
NspV	TTCGAA	1 cut(s)	572
PceI	AGGCCT	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	569, 686
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	19, 206, 232, 409
Ple19I	CGATCG	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	119
PspN4I	GGNNCC	4 cut(s)	151, 336, 358, 651
PspOMI	GGGCCC	1 cut(s)	334
PspPI	GGNCC	6 cut(s)	149, 250, 334, 335, 357, 504
PsyI	GACNNNGTC	1 cut(s)	314
PvuI	CGATCG	1 cut(s)	522
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	444, 540, 706
SatI	GCNGC	4 cut(s)	18, 205, 231, 408
Sau3AI	GATC	4 cut(s)	124, 167, 363, 519
Sau96I	GGNCC	6 cut(s)	149, 250, 334, 335, 357, 504
ScrFI	CCNGG	6 cut(s)	248, 249, 354, 355, 368, 498
SduI	GDGCHC	3 cut(s)	39, 119, 338
SfiI	GGCCNNNNNGGCC	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	572
SinI	GGWCC	2 cut(s)	149, 357
SmaI	CCCGGG	2 cut(s)	249, 355
Sse9I	AATT	2 cut(s)	441, 694
SseBI	AGGCCT	1 cut(s)	279
SstI	GAGCTC	1 cut(s)	119
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	6 cut(s)	246, 247, 352, 353, 366, 496
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	28, 241
TaqI	TCGA	3 cut(s)	33, 518, 572
TasI	AATT	2 cut(s)	441, 694
TauI	GCSGC	4 cut(s)	20, 207, 233, 410
TfiI	GAWTC	2 cut(s)	569, 686
Tru1I	TTAA	3 cut(s)	444, 540, 706
Tru9I	TTAA	3 cut(s)	444, 540, 706
TspDTI	ATGAA	1 cut(s)	687
TspGWI	ACGGA	1 cut(s)	642
TspMI	CCCGGG	2 cut(s)	247, 353
Tth111I	GACNNNGTC	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	149, 357
XagI	CCTNNNNNAGG	1 cut(s)	50
XmaI	CCCGGG	2 cut(s)	247, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.