Protein SHI RELATED SEQUENCE
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G51060 AT5G66350 AT5G66350 AT5G66350 |
| fragaria_vesca | FvH4_1g12410 |
| malus_domestica | MD02G1137000.v1.1 MD15G1250700.v1.1 |
| prunus_persica | Prupe.7G163600_v2.0.a1 Prupe.7G163600_v2.0.a1 Prupe.7G163600_v2.0.a1 |
| pyrus_communis | pycom02g10840 pycom15g22110 |
| rosa_chinensis | RchiOBHm_Chr2g0100271 |
| rosa_laevigata | RLG00000016951 |
| rosa_multiflora | Rmu_sc0002547.1_g000016 |
| rosa_roxburghii | Rroxscaffold_2G00142430 |
| rosa_rugosa | Rorug02G0087000 |
| rosa_samantha | Rh2AG136000 Rh2BG139600 Rh2CG141300 Rh2DG141500 |
| rosa_wichuraiana | Rw2G010640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 359 |
| Acc36I | ACCTGC | 1 cut(s) | 359 |
| AccB1I | GGYRCC | 3 cut(s) | 444, 959, 1146 |
| AccBSI | CCGCTC | 3 cut(s) | 269, 529, 943 |
| AccII | CGCG | 5 cut(s) | 319, 332, 525, 746, 800 |
| AccIII | TCCGGA | 1 cut(s) | 103 |
| AclWI | GGATC | 1 cut(s) | 1034 |
| AcoI | YGGCCR | 1 cut(s) | 324 |
| AcsI | RAATTY | 3 cut(s) | 637, 718, 843 |
| AcuI | CTGAAG | 1 cut(s) | 1104 |
| AcvI | CACGTG | 2 cut(s) | 490, 501 |
| AcyI | GRCGYC | 3 cut(s) | 512, 960, 1147 |
| AfaI | GTAC | 3 cut(s) | 122, 152, 797 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 155 |
| AflIII | ACRYGT | 4 cut(s) | 306, 696, 798, 1102 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 310 |
| AjiI | CACGTC | 3 cut(s) | 136, 309, 699 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 655, 687 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 98, 130 |
| Alw21I | GWGCWC | 3 cut(s) | 500, 740, 773 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| AlwI | GGATC | 1 cut(s) | 1034 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 616 |
| Aor13HI | TCCGGA | 1 cut(s) | 103 |
| AoxI | GGCC | 5 cut(s) | 281, 324, 826, 859, 1087 |
| ApoI | RAATTY | 3 cut(s) | 637, 718, 843 |
| AspLEI | GCGC | 5 cut(s) | 368, 392, 522, 962, 1149 |
| AspS9I | GGNCC | 2 cut(s) | 281, 860 |
| AsuHPI | GGTGA | 2 cut(s) | 230, 1010 |
| BanI | GGYRCC | 3 cut(s) | 444, 959, 1146 |
| BanII | GRGCYC | 3 cut(s) | 299, 740, 773 |
| BbrPI | CACGTG | 2 cut(s) | 490, 501 |
| Bbv12I | GWGCWC | 3 cut(s) | 500, 740, 773 |
| BccI | CCATC | 3 cut(s) | 243, 249, 782 |
| BceAI | ACGGC | 3 cut(s) | 133, 825, 1126 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 608, 642 |
| BclI | TGATCA | 2 cut(s) | 88, 790 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BfaI | CTAG | 2 cut(s) | 272, 1186 |
| BfmI | CTRYAG | 2 cut(s) | 897, 1139 |
| BfoI | RGCGCY | 4 cut(s) | 393, 523, 963, 1150 |
| BfuAI | ACCTGC | 1 cut(s) | 359 |
| BglII | AGATCT | 1 cut(s) | 247 |
| BlpI | GCTNAGC | 1 cut(s) | 144 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 310 |
| BmgBI | CACGTC | 3 cut(s) | 136, 309, 699 |
| BmgT120I | GGNCC | 2 cut(s) | 281, 860 |
| BmiI | GGNNCC | 6 cut(s) | 282, 446, 507, 862, 961, 1148 |
| BmsI | GCATC | 2 cut(s) | 266, 1146 |
| BpmI | CTGGAG | 2 cut(s) | 176, 340 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 144 |
| BsaAI | YACGTR | 2 cut(s) | 490, 501 |
| BsaHI | GRCGYC | 3 cut(s) | 512, 960, 1147 |
| BsaJI | CCNNGG | 3 cut(s) | 466, 744, 856 |
| BsaWI | WCCGGW | 1 cut(s) | 103 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 98, 128 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 155 |
| Bse3DI | GCAATG | 1 cut(s) | 951 |
| BseAI | TCCGGA | 1 cut(s) | 103 |
| BseDI | CCNNGG | 3 cut(s) | 466, 744, 856 |
| BseGI | GGATG | 2 cut(s) | 257, 307 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 155 |
| BseMI | GCAATG | 1 cut(s) | 951 |
| BseMII | CTCAG | 2 cut(s) | 158, 641 |
| BseRI | GAGGAG | 2 cut(s) | 179, 396 |
| BseX3I | CGGCCG | 1 cut(s) | 324 |
| BseYI | CCCAGC | 3 cut(s) | 204, 1057, 1113 |
| Bsh1236I | CGCG | 5 cut(s) | 319, 332, 525, 746, 800 |
| Bsh1285I | CGRYCG | 2 cut(s) | 323, 327 |
| BshFI | GGCC | 5 cut(s) | 283, 326, 828, 861, 1089 |
| BshNI | GGYRCC | 3 cut(s) | 444, 959, 1146 |
| BsiEI | CGRYCG | 2 cut(s) | 323, 327 |
| BsiHKAI | GWGCWC | 3 cut(s) | 500, 740, 773 |
| BsiSI | CCGG | 4 cut(s) | 104, 448, 509, 725 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 155 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsmI | GAATGC | 2 cut(s) | 432, 684 |
| BsnI | GGCC | 5 cut(s) | 283, 326, 828, 861, 1089 |
| Bsp1286I | GDGCHC | 4 cut(s) | 299, 500, 740, 773 |
| Bsp13I | TCCGGA | 1 cut(s) | 103 |
| Bsp143I | GATC | 5 cut(s) | 49, 88, 247, 790, 1039 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 144 |
| BspANI | GGCC | 5 cut(s) | 283, 326, 828, 861, 1089 |
| BspCNI | CTCAG | 2 cut(s) | 157, 642 |
| BspEI | TCCGGA | 1 cut(s) | 103 |
| BspFNI | CGCG | 5 cut(s) | 319, 332, 525, 746, 800 |
| BspLI | GGNNCC | 6 cut(s) | 282, 446, 507, 862, 961, 1148 |
| BspMAI | CTGCAG | 1 cut(s) | 901 |
| BspMI | ACCTGC | 1 cut(s) | 359 |
| BspPI | GGATC | 1 cut(s) | 1034 |
| BspQI | GCTCTTC | 1 cut(s) | 488 |
| BspT107I | GGYRCC | 3 cut(s) | 444, 959, 1146 |
| BsrBI | CCGCTC | 3 cut(s) | 269, 529, 943 |
| BsrDI | GCAATG | 1 cut(s) | 951 |
| BssECI | CCNNGG | 3 cut(s) | 466, 744, 856 |
| BssMI | GATC | 5 cut(s) | 49, 88, 247, 790, 1039 |
| BssNI | GRCGYC | 3 cut(s) | 512, 960, 1147 |
| BssT1I | CCWWGG | 1 cut(s) | 856 |
| Bst4CI | ACNGT | 2 cut(s) | 1033, 1143 |
| Bst6I | CTCTTC | 2 cut(s) | 224, 488 |
| BstACI | GRCGYC | 3 cut(s) | 512, 960, 1147 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 263, 616 |
| BstBAI | YACGTR | 2 cut(s) | 490, 501 |
| BstC8I | GCNNGC | 5 cut(s) | 394, 527, 740, 744, 958 |
| BstDEI | CTNAG | 2 cut(s) | 144, 650 |
| BstDSI | CCRYGG | 1 cut(s) | 744 |
| BstF5I | GGATG | 2 cut(s) | 257, 307 |
| BstFNI | CGCG | 5 cut(s) | 319, 332, 525, 746, 800 |
| BstH2I | RGCGCY | 4 cut(s) | 393, 523, 963, 1150 |
| BstHHI | GCGC | 5 cut(s) | 368, 392, 522, 962, 1149 |
| BstKTI | GATC | 5 cut(s) | 52, 91, 250, 793, 1042 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 5 cut(s) | 49, 88, 247, 790, 1039 |
| BstMCI | CGRYCG | 2 cut(s) | 323, 327 |
| BstNSI | RCATGY | 1 cut(s) | 1106 |
| BstSFI | CTRYAG | 2 cut(s) | 897, 1139 |
| BstUI | CGCG | 5 cut(s) | 319, 332, 525, 746, 800 |
| BstX2I | RGATCY | 2 cut(s) | 247, 1039 |
| BstYI | RGATCY | 2 cut(s) | 247, 1039 |
| BstZI | CGGCCG | 1 cut(s) | 324 |
| BsuRI | GGCC | 5 cut(s) | 283, 326, 828, 861, 1089 |
| BtgI | CCRYGG | 1 cut(s) | 744 |
| BtrI | CACGTC | 3 cut(s) | 136, 309, 699 |
| BtsCI | GGATG | 2 cut(s) | 257, 307 |
| BtsIMutI | CAGTG | 1 cut(s) | 1148 |
| BveI | ACCTGC | 1 cut(s) | 359 |
| Cac8I | GCNNGC | 5 cut(s) | 394, 527, 740, 744, 958 |
| CaiI | CAGNNNCTG | 1 cut(s) | 616 |
| CfoI | GCGC | 5 cut(s) | 368, 392, 522, 962, 1149 |
| Cfr13I | GGNCC | 2 cut(s) | 281, 860 |
| Cfr42I | CCGCGG | 1 cut(s) | 747 |
| CseI | GACGC | 1 cut(s) | 501 |
| Csp6I | GTAC | 3 cut(s) | 121, 151, 796 |
| CviAII | CATG | 7 cut(s) | 439, 544, 883, 889, 1078, 1103, 1151 |
| CviQI | GTAC | 3 cut(s) | 121, 151, 796 |
| DdeI | CTNAG | 2 cut(s) | 144, 650 |
| DinI | GGCGCC | 2 cut(s) | 961, 1148 |
| DpnI | GATC | 5 cut(s) | 51, 90, 249, 792, 1041 |
| DpnII | GATC | 5 cut(s) | 49, 88, 247, 790, 1039 |
| DraI | TTTAAA | 1 cut(s) | 838 |
| DriI | GACNNNNNGTC | 1 cut(s) | 310 |
| EaeI | YGGCCR | 1 cut(s) | 324 |
| EagI | CGGCCG | 1 cut(s) | 324 |
| Eam1104I | CTCTTC | 2 cut(s) | 224, 488 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 310 |
| EarI | CTCTTC | 2 cut(s) | 224, 488 |
| Ecl136II | GAGCTC | 2 cut(s) | 738, 771 |
| EclXI | CGGCCG | 1 cut(s) | 324 |
| Eco130I | CCWWGG | 1 cut(s) | 856 |
| Eco147I | AGGCCT | 1 cut(s) | 1089 |
| Eco24I | GRGCYC | 3 cut(s) | 299, 740, 773 |
| Eco52I | CGGCCG | 1 cut(s) | 324 |
| Eco53kI | GAGCTC | 2 cut(s) | 738, 771 |
| Eco57I | CTGAAG | 1 cut(s) | 1104 |
| Eco72I | CACGTG | 2 cut(s) | 490, 501 |
| EcoICRI | GAGCTC | 2 cut(s) | 738, 771 |
| EcoO109I | RGGNCCY | 1 cut(s) | 860 |
| EcoRI | GAATTC | 2 cut(s) | 637, 843 |
| EcoT14I | CCWWGG | 1 cut(s) | 856 |
| EcoT38I | GRGCYC | 3 cut(s) | 299, 740, 773 |
| EgeI | GGCGCC | 2 cut(s) | 961, 1148 |
| EheI | GGCGCC | 2 cut(s) | 961, 1148 |
| ErhI | CCWWGG | 1 cut(s) | 856 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FaeI | CATG | 7 cut(s) | 442, 547, 886, 892, 1081, 1106, 1154 |
| FatI | CATG | 7 cut(s) | 438, 543, 882, 888, 1077, 1102, 1150 |
| FauI | CCCGC | 2 cut(s) | 751, 1009 |
| FbaI | TGATCA | 2 cut(s) | 88, 790 |
| FokI | GGATG | 2 cut(s) | 244, 314 |
| FriOI | GRGCYC | 3 cut(s) | 299, 740, 773 |
| FspBI | CTAG | 2 cut(s) | 272, 1186 |
| GlaI | GCGC | 5 cut(s) | 367, 391, 521, 961, 1148 |
| GsaI | CCCAGC | 3 cut(s) | 208, 1061, 1117 |
| GsuI | CTGGAG | 2 cut(s) | 176, 340 |
| HaeII | RGCGCY | 4 cut(s) | 393, 523, 963, 1150 |
| HaeIII | GGCC | 5 cut(s) | 283, 326, 828, 861, 1089 |
| HapII | CCGG | 4 cut(s) | 104, 448, 509, 725 |
| HgaI | GACGC | 1 cut(s) | 501 |
| HhaI | GCGC | 5 cut(s) | 368, 392, 522, 962, 1149 |
| Hin1I | GRCGYC | 3 cut(s) | 512, 960, 1147 |
| Hin1II | CATG | 7 cut(s) | 442, 547, 886, 892, 1081, 1106, 1154 |
| Hin6I | GCGC | 5 cut(s) | 366, 390, 520, 960, 1147 |
| HinP1I | GCGC | 5 cut(s) | 366, 390, 520, 960, 1147 |
| HinfI | GANTC | 1 cut(s) | 625 |
| HpaII | CCGG | 4 cut(s) | 104, 448, 509, 725 |
| HphI | GGTGA | 2 cut(s) | 230, 1010 |
| Hpy166II | GTNNAC | 2 cut(s) | 817, 1108 |
| Hpy188I | TCNGA | 3 cut(s) | 301, 807, 1100 |
| Hpy188III | TCNNGA | 4 cut(s) | 53, 104, 245, 401 |
| Hpy8I | GTNNAC | 2 cut(s) | 817, 1108 |
| Hpy99I | CGWCG | 5 cut(s) | 313, 316, 319, 517, 788 |
| HpyAV | CCTTC | 3 cut(s) | 689, 1053, 1079 |
| HpyCH4III | ACNGT | 2 cut(s) | 1033, 1143 |
| HpyCH4IV | ACGT | 6 cut(s) | 110, 135, 308, 489, 500, 698 |
| HpyCH4V | TGCA | 6 cut(s) | 432, 459, 553, 619, 899, 1159 |
| HpyF3I | CTNAG | 2 cut(s) | 144, 650 |
| HpySE526I | ACGT | 6 cut(s) | 110, 135, 308, 489, 500, 698 |
| Hsp92I | GRCGYC | 3 cut(s) | 512, 960, 1147 |
| Hsp92II | CATG | 7 cut(s) | 442, 547, 886, 892, 1081, 1106, 1154 |
| HspAI | GCGC | 5 cut(s) | 366, 390, 520, 960, 1147 |
| KasI | GGCGCC | 2 cut(s) | 959, 1146 |
| Kpn2I | TCCGGA | 1 cut(s) | 103 |
| Ksp22I | TGATCA | 2 cut(s) | 88, 790 |
| KspI | CCGCGG | 1 cut(s) | 747 |
| Kzo9I | GATC | 5 cut(s) | 49, 88, 247, 790, 1039 |
| LguI | GCTCTTC | 1 cut(s) | 488 |
| LmnI | GCTCC | 5 cut(s) | 106, 192, 201, 776, 1066 |
| LweI | GCATC | 2 cut(s) | 266, 1146 |
| MaeI | CTAG | 2 cut(s) | 272, 1186 |
| MaeII | ACGT | 6 cut(s) | 110, 135, 308, 489, 500, 698 |
| MaeIII | GTNAC | 1 cut(s) | 1134 |
| MalI | GATC | 5 cut(s) | 51, 90, 249, 792, 1041 |
| MbiI | CCGCTC | 3 cut(s) | 269, 529, 943 |
| MboI | GATC | 5 cut(s) | 49, 88, 247, 790, 1039 |
| MboII | GAAGA | 5 cut(s) | 211, 505, 666, 1038, 1087 |
| MfeI | CAATTG | 1 cut(s) | 1128 |
| MflI | RGATCY | 2 cut(s) | 247, 1039 |
| MhlI | GDGCHC | 4 cut(s) | 299, 500, 740, 773 |
| MluCI | AATT | 6 cut(s) | 96, 637, 670, 718, 843, 1128 |
| MluI | ACGCGT | 1 cut(s) | 798 |
| Mly113I | GGCGCC | 2 cut(s) | 960, 1147 |
| MmeI | TCCRAC | 2 cut(s) | 687, 1123 |
| MroI | TCCGGA | 1 cut(s) | 103 |
| MseI | TTAA | 3 cut(s) | 837, 930, 1068 |
| MslI | CAYNNNNRTG | 2 cut(s) | 437, 887 |
| MspA1I | CMGCKG | 7 cut(s) | 263, 360, 396, 616, 746, 902, 1162 |
| MspI | CCGG | 4 cut(s) | 104, 448, 509, 725 |
| MunI | CAATTG | 1 cut(s) | 1128 |
| Mva1269I | GAATGC | 2 cut(s) | 432, 684 |
| MvnI | CGCG | 5 cut(s) | 319, 332, 525, 746, 800 |
| NarI | GGCGCC | 2 cut(s) | 960, 1147 |
| NdeII | GATC | 5 cut(s) | 49, 88, 247, 790, 1039 |
| NlaIII | CATG | 7 cut(s) | 442, 547, 886, 892, 1081, 1106, 1154 |
| NlaIV | GGNNCC | 6 cut(s) | 282, 446, 507, 862, 961, 1148 |
| NmeAIII | GCCGAG | 3 cut(s) | 309, 491, 669 |
| NspI | RCATGY | 1 cut(s) | 1106 |
| PaqCI | CACCTGC | 1 cut(s) | 359 |
| PceI | AGGCCT | 1 cut(s) | 1089 |
| PciI | ACATGT | 1 cut(s) | 1102 |
| PciSI | GCTCTTC | 1 cut(s) | 488 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 305, 329, 783 |
| PctI | GAATGC | 2 cut(s) | 432, 684 |
| PfeI | GAWTC | 1 cut(s) | 625 |
| PluTI | GGCGCC | 2 cut(s) | 963, 1150 |
| PmaCI | CACGTG | 2 cut(s) | 490, 501 |
| PmlI | CACGTG | 2 cut(s) | 490, 501 |
| Ppu21I | YACGTR | 2 cut(s) | 490, 501 |
| PscI | ACATGT | 1 cut(s) | 1102 |
| Psp124BI | GAGCTC | 2 cut(s) | 740, 773 |
| PspCI | CACGTG | 2 cut(s) | 490, 501 |
| PspFI | CCCAGC | 3 cut(s) | 204, 1057, 1113 |
| PspN4I | GGNNCC | 6 cut(s) | 282, 446, 507, 862, 961, 1148 |
| PspPI | GGNCC | 2 cut(s) | 281, 860 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 143, 175 |
| PstI | CTGCAG | 1 cut(s) | 901 |
| PstNI | CAGNNNCTG | 1 cut(s) | 616 |
| PsuI | RGATCY | 2 cut(s) | 247, 1039 |
| PvuII | CAGCTG | 4 cut(s) | 396, 616, 902, 1162 |
| RsaI | GTAC | 3 cut(s) | 122, 152, 797 |
| RsaNI | GTAC | 3 cut(s) | 121, 151, 796 |
| RseI | CAYNNNNRTG | 2 cut(s) | 437, 887 |
| SacI | GAGCTC | 2 cut(s) | 740, 773 |
| SacII | CCGCGG | 1 cut(s) | 747 |
| SapI | GCTCTTC | 1 cut(s) | 488 |
| SaqAI | TTAA | 3 cut(s) | 837, 930, 1068 |
| Sau3AI | GATC | 5 cut(s) | 49, 88, 247, 790, 1039 |
| Sau96I | GGNCC | 2 cut(s) | 281, 860 |
| SduI | GDGCHC | 4 cut(s) | 299, 500, 740, 773 |
| SfaNI | GCATC | 2 cut(s) | 266, 1146 |
| SfcI | CTRYAG | 2 cut(s) | 897, 1139 |
| SfoI | GGCGCC | 2 cut(s) | 961, 1148 |
| Sfr303I | CCGCGG | 1 cut(s) | 747 |
| SgrBI | CCGCGG | 1 cut(s) | 747 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 437, 887 |
| Sse9I | AATT | 6 cut(s) | 96, 637, 670, 718, 843, 1128 |
| SseBI | AGGCCT | 1 cut(s) | 1089 |
| SspDI | GGCGCC | 2 cut(s) | 959, 1146 |
| SspMI | CTAG | 2 cut(s) | 272, 1186 |
| SstI | GAGCTC | 2 cut(s) | 740, 773 |
| StuI | AGGCCT | 1 cut(s) | 1089 |
| StyI | CCWWGG | 1 cut(s) | 856 |
| TaaI | ACNGT | 2 cut(s) | 1033, 1143 |
| TaiI | ACGT | 6 cut(s) | 113, 138, 311, 492, 503, 701 |
| TaqI | TCGA | 4 cut(s) | 162, 474, 515, 777 |
| TasI | AATT | 6 cut(s) | 96, 637, 670, 718, 843, 1128 |
| TauI | GCSGC | 9 cut(s) | 33, 269, 329, 332, 525, 532, 943, 974, 996 |
| TfiI | GAWTC | 1 cut(s) | 625 |
| Tru1I | TTAA | 3 cut(s) | 837, 930, 1068 |
| Tru9I | TTAA | 3 cut(s) | 837, 930, 1068 |
| TscAI | CASTG | 1 cut(s) | 1148 |
| TspDTI | ATGAA | 2 cut(s) | 899, 900 |
| TspRI | CASTG | 1 cut(s) | 1148 |
| XapI | RAATTY | 3 cut(s) | 637, 718, 843 |
| XceI | RCATGY | 1 cut(s) | 1106 |
| XspI | CTAG | 2 cut(s) | 272, 1186 |