Rroxscaffold_2G00142430

Protein SHI RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
80492831 .. 80495386
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142430.1

Sequence Viewer

Length: 1125 bp
ATGGCTGGATTTTTCTCATTAGGCGGAGGAGGAGGAGGAGGTCGGAGCAGTCACAACCCAGAAAGCCGGAATCAGAATCAACCGGAATCAAGTGAAATTCCGCCAGAGACGTTGTTTTGGTACAAGAATGAAGAGGGCATGCCGTTCAAAGGAAGCTTCGAGCTATGGCAGCACCAGCAGCAGCAACTGCAGCATCACCAGCACCAGCAGCACCAGCTCCAGCAGCTCCAGCTCCAGCAAGATCTGTACGCCTCCGCCGCCGCTCTAGGCGTTGGTCCCAGCAGCATCAACGTCTCGGATGAGTCGTCGTCGCGGCCCTTCATGATGATGAGACCCTCCTCGTCCGGCGGCGGAGGAGGAGGTGGAGGTGGATCGACGTCCGGGAGCACGGTCAGCTGTCAAGACTGCGGCAACCAAGCCAAGAAAGATTGCGTGCACATGCGGTGCAGGACTTGCTGCAAGAGCCGAGGGTTCGACTGCGCGACCCACGTGAAGAGCACGTGGGTTCCGGCGTCGAAACGCCGGGAGAGGCAGCAGCAGCACCTCACGGCGTTGCAGCAACAGCAACAGCAACACACTCAACAAGAAGTTCAAGTGATCCGCGGAGGCGGAGAGAATCCGAAGAGGCTGAGAGAGAGTAGTAACAACAATCCGAATAATCCGAGCTCCAATTCTTCTCTGGGCGCCTGCACTCGCATTATCACAAACGCGTCAGGGTTGGAAGTGGGGAATTTTCCAGCAGAAGTGACTTCTCCCGCAGTGTTTCGCTGCGTGAGAGTAAGCTCCATCGACGATGACGAAGATCAATACGCCTATCAGACGGCTGTGAACATCGCTGGCCACGTGTTCAAGGGAATTCTCTACAACCAAGGCCCCGATACTAACTATAATATGAGTACAGCTGGTGAGAGCTCGTCTGGTGGTGGAGGAGGCGGAGGCGGAGGTGGTGGAGGAGTCATTCAACCCCTCAATCTCATCAATGCGGCGCCCACGACAGCTGGCAGTGGCGGTGTAACAGTGGCAGCCGCTTCAGGTTCCGGGACGTTAATGGATCCTAATTCTCTATACCCGGTTAACCCATTCATGGCTTCGGGTACGCAATTCTTCCTACCACCAAGATCTTGA

Protein Analysis

374

Amino Acids

39.47

Weight (kDa)

6.82

Isoelectric Point (pI)

65.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 130 - 293 5.4e-67 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 380
AccB1I GGYRCC 2 cut(s) 683, 985
AccBSI CCGCTC 1 cut(s) 263
AccII CGCG 4 cut(s) 313, 482, 603, 710
AclWI GGATC 4 cut(s) 379, 592, 1046, 1059
AcoI YGGCCR 1 cut(s) 838
AcsI RAATTY 3 cut(s) 96, 730, 855
AcuI CTGAAG 1 cut(s) 1014
AcvI CACGTG 3 cut(s) 490, 501, 844
AcyI GRCGYC 4 cut(s) 377, 512, 684, 986
AfaI GTAC 4 cut(s) 122, 248, 898, 1096
AfiI CCNNNNNNNGG 2 cut(s) 149, 1084
AflIII ACRYGT 2 cut(s) 708, 843
AgsI TTSAA 4 cut(s) 148, 593, 850, 962
Alw21I GWGCWC 5 cut(s) 389, 438, 500, 668, 914
Alw26I GTCTC 3 cut(s) 101, 298, 325
Alw44I GTGCAC 1 cut(s) 434
AlwI GGATC 4 cut(s) 379, 592, 1046, 1059
AlwNI CAGNNNCTG 1 cut(s) 187
AoxI GGCC 3 cut(s) 314, 838, 871
ApaLI GTGCAC 1 cut(s) 434
ApoI RAATTY 3 cut(s) 96, 730, 855
AspLEI GCGC 3 cut(s) 482, 686, 988
AspS9I GGNCC 3 cut(s) 275, 315, 872
AsuC2I CCSGG 4 cut(s) 382, 524, 1039, 1070
AsuHPI GGTGA 2 cut(s) 188, 917
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 438
BalI TGGCCA 1 cut(s) 840
BamHI GGATCC 1 cut(s) 1051
BanI GGYRCC 2 cut(s) 683, 985
BanII GRGCYC 2 cut(s) 668, 914
BbrPI CACGTG 3 cut(s) 490, 501, 844
Bbv12I GWGCWC 5 cut(s) 389, 438, 500, 668, 914
BccI CCATC 1 cut(s) 794
BceAI ACGGC 3 cut(s) 127, 564, 837
BcnI CCSGG 4 cut(s) 382, 524, 1039, 1070
BcoDI GTCTC 3 cut(s) 101, 298, 325
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 188
BfoI RGCGCY 2 cut(s) 687, 989
BglII AGATCT 2 cut(s) 241, 1118
Bme1390I CCNGG 4 cut(s) 382, 524, 1039, 1070
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 3 cut(s) 275, 315, 872
BmiI GGNNCC 7 cut(s) 277, 507, 685, 874, 987, 1036, 1053
BmrFI CCNGG 4 cut(s) 382, 524, 1039, 1070
BmsI GCATC 2 cut(s) 202, 294
BpmI CTGGAG 3 cut(s) 203, 212, 218
BpuMI CCSGG 4 cut(s) 382, 524, 1039, 1070
BsaAI YACGTR 3 cut(s) 490, 501, 844
BsaHI GRCGYC 4 cut(s) 377, 512, 684, 986
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 3 cut(s) 466, 601, 868
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 1084
BseDI CCNNGG 3 cut(s) 466, 601, 868
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 149, 1084
BseMII CTCAG 1 cut(s) 620
BseRI GAGGAG 9 cut(s) 42, 45, 48, 51, 328, 369, 372, 942, 966
BseSI GKGCMC 1 cut(s) 438
BseYI CCCAGC 1 cut(s) 278
BsgI GTGCAG 2 cut(s) 466, 673
Bsh1236I CGCG 4 cut(s) 313, 482, 603, 710
BshFI GGCC 3 cut(s) 316, 840, 873
BshNI GGYRCC 2 cut(s) 683, 985
BsiHKAI GWGCWC 5 cut(s) 389, 438, 500, 668, 914
BsiSI CCGG 8 cut(s) 67, 83, 345, 381, 509, 523, 1038, 1070
BslFI GGGAC 2 cut(s) 261, 1054
BslI CCNNNNNNNGG 2 cut(s) 149, 1084
BsmAI GTCTC 3 cut(s) 101, 298, 325
BsmBI CGTCTC 2 cut(s) 101, 298
BsmFI GGGAC 2 cut(s) 261, 1054
BsnI GGCC 3 cut(s) 316, 840, 873
Bso31I GGTCTC 1 cut(s) 325
Bsp1286I GDGCHC 5 cut(s) 389, 438, 500, 668, 914
Bsp143I GATC 6 cut(s) 241, 371, 597, 802, 1051, 1118
BspANI GGCC 3 cut(s) 316, 840, 873
BspCNI CTCAG 1 cut(s) 621
BspFNI CGCG 4 cut(s) 313, 482, 603, 710
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 7 cut(s) 277, 507, 685, 874, 987, 1036, 1053
BspMAI CTGCAG 1 cut(s) 192
BspPI GGATC 4 cut(s) 379, 592, 1046, 1059
BspQI GCTCTTC 1 cut(s) 488
BspT107I GGYRCC 2 cut(s) 683, 985
BspTNI GGTCTC 1 cut(s) 325
BsrBI CCGCTC 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 466, 601, 868
BssMI GATC 6 cut(s) 241, 371, 597, 802, 1051, 1118
BssNI GRCGYC 4 cut(s) 377, 512, 684, 986
BssT1I CCWWGG 1 cut(s) 868
Bst4CI ACNGT 2 cut(s) 391, 1018
Bst6I CTCTTC 3 cut(s) 126, 488, 617
BstACI GRCGYC 4 cut(s) 377, 512, 684, 986
BstAPI GCANNNNNTGC 2 cut(s) 187, 453
BstBAI YACGTR 3 cut(s) 490, 501, 844
BstC8I GCNNGC 5 cut(s) 140, 434, 688, 838, 1000
BstDEI CTNAG 1 cut(s) 629
BstDSI CCRYGG 1 cut(s) 601
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 4 cut(s) 313, 482, 603, 710
BstH2I RGCGCY 2 cut(s) 687, 989
BstHHI GCGC 3 cut(s) 482, 686, 988
BstKTI GATC 6 cut(s) 244, 374, 600, 805, 1054, 1121
BstMAI GTCTC 3 cut(s) 101, 298, 325
BstMBI GATC 6 cut(s) 241, 371, 597, 802, 1051, 1118
BstNSI RCATGY 2 cut(s) 142, 442
BstSCI CCNGG 4 cut(s) 380, 522, 1037, 1068
BstSFI CTRYAG 1 cut(s) 188
BstSLI GKGCMC 1 cut(s) 438
BstUI CGCG 4 cut(s) 313, 482, 603, 710
BstX2I RGATCY 3 cut(s) 241, 1051, 1118
BstYI RGATCY 3 cut(s) 241, 1051, 1118
BsuRI GGCC 3 cut(s) 316, 840, 873
BtgI CCRYGG 1 cut(s) 601
BtgZI GCGATG 1 cut(s) 817
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 2 cut(s) 765, 1009
BtsIMutI CAGTG 3 cut(s) 765, 1009, 1023
Cac8I GCNNGC 5 cut(s) 140, 434, 688, 838, 1000
CaiI CAGNNNCTG 1 cut(s) 187
CciI TCATGA 1 cut(s) 321
CfoI GCGC 3 cut(s) 482, 686, 988
Cfr13I GGNCC 3 cut(s) 275, 315, 872
Cfr42I CCGCGG 1 cut(s) 604
CseI GACGC 2 cut(s) 501, 699
Csp6I GTAC 4 cut(s) 121, 247, 897, 1095
CviAII CATG 4 cut(s) 139, 322, 439, 1084
CviQI GTAC 4 cut(s) 121, 247, 897, 1095
DdeI CTNAG 1 cut(s) 629
DinI GGCGCC 2 cut(s) 685, 987
DpnI GATC 6 cut(s) 243, 373, 599, 804, 1053, 1120
DpnII GATC 6 cut(s) 241, 371, 597, 802, 1051, 1118
EaeI YGGCCR 1 cut(s) 838
Eam1104I CTCTTC 3 cut(s) 126, 488, 617
EarI CTCTTC 3 cut(s) 126, 488, 617
EciI GGCGGA 7 cut(s) 39, 90, 244, 366, 624, 948, 954
Ecl136II GAGCTC 2 cut(s) 666, 912
Eco130I CCWWGG 1 cut(s) 868
Eco24I GRGCYC 2 cut(s) 668, 914
Eco31I GGTCTC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 2 cut(s) 666, 912
Eco57I CTGAAG 1 cut(s) 1014
Eco72I CACGTG 3 cut(s) 490, 501, 844
EcoICRI GAGCTC 2 cut(s) 666, 912
EcoO109I RGGNCCY 1 cut(s) 872
EcoRI GAATTC 1 cut(s) 855
EcoT14I CCWWGG 1 cut(s) 868
EcoT38I GRGCYC 2 cut(s) 668, 914
EgeI GGCGCC 2 cut(s) 685, 987
EheI GGCGCC 2 cut(s) 685, 987
ErhI CCWWGG 1 cut(s) 868
Esp3I CGTCTC 2 cut(s) 101, 298
FaeI CATG 4 cut(s) 142, 325, 442, 1087
FaiI YATR 8 cut(s) 140, 166, 323, 440, 888, 893, 1066, 1085
FaqI GGGAC 2 cut(s) 261, 1054
FatI CATG 4 cut(s) 138, 321, 438, 1083
FauI CCCGC 1 cut(s) 763
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 2 cut(s) 668, 914
FspBI CTAG 1 cut(s) 266
GlaI GCGC 3 cut(s) 481, 685, 987
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 3 cut(s) 203, 212, 218
HaeII RGCGCY 2 cut(s) 687, 989
HaeIII GGCC 3 cut(s) 316, 840, 873
HapII CCGG 8 cut(s) 67, 83, 345, 381, 509, 523, 1038, 1070
HgaI GACGC 2 cut(s) 501, 699
HhaI GCGC 3 cut(s) 482, 686, 988
Hin1I GRCGYC 4 cut(s) 377, 512, 684, 986
Hin1II CATG 4 cut(s) 142, 325, 442, 1087
Hin6I GCGC 3 cut(s) 480, 684, 986
HinP1I GCGC 3 cut(s) 480, 684, 986
HincII GTYRAC 1 cut(s) 1075
HindII GTYRAC 1 cut(s) 1075
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 6 cut(s) 70, 76, 86, 302, 616, 954
HpaI GTTAAC 1 cut(s) 1075
HpaII CCGG 8 cut(s) 67, 83, 345, 381, 509, 523, 1038, 1070
HphI GGTGA 2 cut(s) 188, 917
Hpy166II GTNNAC 3 cut(s) 436, 829, 1075
Hpy188I TCNGA 7 cut(s) 45, 75, 298, 621, 654, 663, 819
Hpy188III TCNNGA 3 cut(s) 322, 401, 1122
Hpy8I GTNNAC 3 cut(s) 436, 829, 1075
Hpy99I CGWCG 5 cut(s) 310, 313, 379, 517, 794
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 391, 1018
HpyCH4IV ACGT 7 cut(s) 110, 291, 377, 489, 500, 843, 1043
HpyCH4V TGCA 6 cut(s) 190, 436, 447, 459, 556, 690
HpyF3I CTNAG 1 cut(s) 629
HpySE526I ACGT 7 cut(s) 110, 291, 377, 489, 500, 843, 1043
Hsp92I GRCGYC 4 cut(s) 377, 512, 684, 986
Hsp92II CATG 4 cut(s) 142, 325, 442, 1087
HspAI GCGC 3 cut(s) 480, 684, 986
KasI GGCGCC 2 cut(s) 683, 985
KspAI GTTAAC 1 cut(s) 1075
KspI CCGCGG 1 cut(s) 604
Kzo9I GATC 6 cut(s) 241, 371, 597, 802, 1051, 1118
LguI GCTCTTC 1 cut(s) 488
LmnI GCTCC 7 cut(s) 45, 222, 231, 237, 384, 671, 788
LweI GCATC 2 cut(s) 202, 294
MaeI CTAG 1 cut(s) 266
MaeII ACGT 7 cut(s) 110, 291, 377, 489, 500, 843, 1043
MaeIII GTNAC 4 cut(s) 50, 641, 745, 1012
MalI GATC 6 cut(s) 243, 373, 599, 804, 1053, 1120
MbiI CCGCTC 1 cut(s) 263
MboI GATC 6 cut(s) 241, 371, 597, 802, 1051, 1118
MboII GAAGA 6 cut(s) 143, 505, 634, 666, 812, 1096
MflI RGATCY 3 cut(s) 241, 1051, 1118
MhlI GDGCHC 5 cut(s) 389, 438, 500, 668, 914
MlsI TGGCCA 1 cut(s) 840
MluCI AATT 6 cut(s) 96, 670, 730, 855, 1057, 1100
MluI ACGCGT 1 cut(s) 708
MluNI TGGCCA 1 cut(s) 840
Mly113I GGCGCC 2 cut(s) 684, 986
MlyI GAGTC 2 cut(s) 311, 963
MmeI TCCRAC 2 cut(s) 23, 699
Mox20I TGGCCA 1 cut(s) 840
MscI TGGCCA 1 cut(s) 840
MseI TTAA 2 cut(s) 1046, 1074
MslI CAYNNNNRTG 1 cut(s) 326
Msp20I TGGCCA 1 cut(s) 840
MspA1I CMGCKG 4 cut(s) 396, 603, 902, 998
MspI CCGG 8 cut(s) 67, 83, 345, 381, 509, 523, 1038, 1070
MspR9I CCNGG 4 cut(s) 382, 524, 1039, 1070
MvnI CGCG 4 cut(s) 313, 482, 603, 710
NarI GGCGCC 2 cut(s) 684, 986
NciI CCSGG 4 cut(s) 382, 524, 1039, 1070
NdeII GATC 6 cut(s) 241, 371, 597, 802, 1051, 1118
NlaIII CATG 4 cut(s) 142, 325, 442, 1087
NlaIV GGNNCC 7 cut(s) 277, 507, 685, 874, 987, 1036, 1053
NmeAIII GCCGAG 1 cut(s) 491
NmuCI GTSAC 2 cut(s) 50, 745
NspI RCATGY 2 cut(s) 142, 442
PaeI GCATGC 1 cut(s) 142
PagI TCATGA 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 488
PcsI WCGNNNNNNNCGW 3 cut(s) 302, 795, 840
PfeI GAWTC 4 cut(s) 70, 76, 86, 616
PfoI TCCNGGA 2 cut(s) 380, 1037
PleI GAGTC 2 cut(s) 310, 962
PluTI GGCGCC 2 cut(s) 687, 989
PmaCI CACGTG 3 cut(s) 490, 501, 844
PmlI CACGTG 3 cut(s) 490, 501, 844
PpsI GAGTC 2 cut(s) 310, 962
Ppu21I YACGTR 3 cut(s) 490, 501, 844
Psp124BI GAGCTC 2 cut(s) 668, 914
PspCI CACGTG 3 cut(s) 490, 501, 844
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 7 cut(s) 277, 507, 685, 874, 987, 1036, 1053
PspPI GGNCC 3 cut(s) 275, 315, 872
PstI CTGCAG 1 cut(s) 192
PstNI CAGNNNCTG 1 cut(s) 187
PsuI RGATCY 3 cut(s) 241, 1051, 1118
PvuII CAGCTG 3 cut(s) 396, 902, 998
RsaI GTAC 4 cut(s) 122, 248, 898, 1096
RsaNI GTAC 4 cut(s) 121, 247, 897, 1095
RseI CAYNNNNRTG 1 cut(s) 326
SacI GAGCTC 2 cut(s) 668, 914
SacII CCGCGG 1 cut(s) 604
SapI GCTCTTC 1 cut(s) 488
SaqAI TTAA 2 cut(s) 1046, 1074
Sau3AI GATC 6 cut(s) 241, 371, 597, 802, 1051, 1118
Sau96I GGNCC 3 cut(s) 275, 315, 872
SchI GAGTC 2 cut(s) 311, 963
ScrFI CCNGG 4 cut(s) 382, 524, 1039, 1070
SduI GDGCHC 5 cut(s) 389, 438, 500, 668, 914
SfaNI GCATC 2 cut(s) 202, 294
SfcI CTRYAG 1 cut(s) 188
SfoI GGCGCC 2 cut(s) 685, 987
Sfr303I CCGCGG 1 cut(s) 604
SgrBI CCGCGG 1 cut(s) 604
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 326
SphI GCATGC 1 cut(s) 142
Sse9I AATT 6 cut(s) 96, 670, 730, 855, 1057, 1100
SspDI GGCGCC 2 cut(s) 683, 985
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 2 cut(s) 668, 914
StyD4I CCNGG 4 cut(s) 380, 522, 1037, 1068
StyI CCWWGG 1 cut(s) 868
TaaI ACNGT 2 cut(s) 391, 1018
TaiI ACGT 7 cut(s) 113, 294, 380, 492, 503, 846, 1046
TaqI TCGA 5 cut(s) 159, 374, 474, 515, 789
TasI AATT 6 cut(s) 96, 670, 730, 855, 1057, 1100
TatI WGTACW 1 cut(s) 896
TauI GCSGC 7 cut(s) 260, 263, 316, 351, 411, 986, 1028
TfiI GAWTC 4 cut(s) 70, 76, 86, 616
Tru1I TTAA 2 cut(s) 1046, 1074
Tru9I TTAA 2 cut(s) 1046, 1074
TscAI CASTG 3 cut(s) 765, 1009, 1023
TseFI GTSAC 2 cut(s) 50, 745
Tsp45I GTSAC 2 cut(s) 50, 745
TspDTI ATGAA 3 cut(s) 144, 310, 1072
TspRI CASTG 3 cut(s) 765, 1009, 1023
VneI GTGCAC 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 3 cut(s) 96, 730, 855
XceI RCATGY 2 cut(s) 142, 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XspI CTAG 1 cut(s) 266
ZraI GACGTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.