pycom02g10840

Protein SHI RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
7632933 .. 7634633
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10840.1

Sequence Viewer

Length: 1110 bp
ATGGCTGGTTTTTTCTCATTAGGCAGAGGCGGCAGCGACGACCAGGATAATAGCAACAACCCACCGCCGCCTGATCACCACAACCACCATCAAATTGCTCCGGAGACGTTGTTCTGGTACAAGAATGAGGACGTGGCAAATCAGCCGTACAAGGGCTTCGAGCCGTGGCAGCAACAGGAGCAGCTCCTCCAGCTCCAAACCCAGCCGCCCCCACGGCTTTACCAGCCTCATCCCCACCACCATCAAGATCTCTACACTTCTGCGGCTGCTCTAGGGGTGGGTCCCAGCAGCAGGGGATCGGATGACACTTCATCGTCGAGGTCGGCCACAGCGGGGTTTACGATGATGAGGTCGTCGTCAGGAGGAAGAGGAGGAAGCGGAGGAGGCGCCAGCTGTCAGGACTGCGGGAACCAAGCGAAGAAAGACTGCATACACATGAGGTGCAGGACTTGCTGCAAGAACCGAGGGTTACACTGTCCGACCCACGTCAAGAGCACATGGGTTCCGGCGTCGAAACGCCGTGAGCGGCAGCAGCAGCTTGCCGCCTTGCAGCACCAACACCACCAACACCAAGGTCATATACAACAACACCACGACCAACAACAGCAGCAGCTTCAAGTGATTCGAGGAGAAAGTTCGAAAAGACTCAGAGAAAATCCGAGCTCGAATCCCTCTCTTCGTATTCTCACAAACACAAACACTTCAGGCTTGGATGTGGTGAATTTCCCGCCGGAAGTGAGTTCGCCGGCTGTATTTCGCTGCATGAAAGTGAGCGCAATGGACAACGAGGATCAGTACGCGTACCAGACGGCTGTGAACATCGCAGGCCATTTGTTTAAAGGAATTCTCTACGACCAAGGACCCGAATCCCCTAACTACAACATGAACATGGCAGCTGACACCTCGTCTGGTGGTGGAGTTAATTTCCAACCGCTTAATCTCATCGCGGGAGCCGCCACCGCCGTTAACACAGCGTCCATTGATGGTGGTGGCGGCCACGAGGGAGTGGAAGTGGCGGGTTCGACGACAGTTATAGATCCTTCTTCTCTATATCCAGCTCCAATTAACACATACATGGGTACGCAATTCTTCCTACCACCAAGATCTTGA

Protein Analysis

370

Amino Acids

40.18

Weight (kDa)

6.84

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 129 - 289 3.5e-62 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 386
AccBSI CCGCTC 1 cut(s) 526
AccII CGCG 2 cut(s) 800, 947
AccIII TCCGGA 1 cut(s) 100
AclWI GGATC 3 cut(s) 304, 798, 1031
AcoI YGGCCR 2 cut(s) 324, 994
AcsI RAATTY 2 cut(s) 721, 843
AcuI CTGAAG 1 cut(s) 687
AcyI GRCGYC 2 cut(s) 387, 509
AfaI GTAC 5 cut(s) 119, 149, 797, 803, 1081
AfiI CCNNNNNNNGG 3 cut(s) 152, 291, 333
AflIII ACRYGT 1 cut(s) 798
AgsI TTSAA 1 cut(s) 617
AhdI GACNNNNNGTC 1 cut(s) 904
AjiI CACGTC 2 cut(s) 133, 487
AjnI CCWGG 1 cut(s) 42
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 8 cut(s) 184, 193, 393, 538, 613, 663, 896, 1058
AluI AGCT 8 cut(s) 184, 193, 393, 538, 613, 663, 896, 1058
Alw21I GWGCWC 2 cut(s) 497, 665
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 3 cut(s) 304, 798, 1031
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 3 cut(s) 324, 826, 994
ApoI RAATTY 2 cut(s) 721, 843
AspLEI GCGC 2 cut(s) 389, 776
AspS9I GGNCC 2 cut(s) 281, 860
AsuHPI GGTGA 2 cut(s) 68, 730
AsuII TTCGAA 1 cut(s) 638
AvaII GGWCC 2 cut(s) 281, 860
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 1 cut(s) 665
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
BauI CACGAG 1 cut(s) 998
Bbv12I GWGCWC 2 cut(s) 497, 665
BccI CCATC 3 cut(s) 96, 249, 977
BceAI ACGGC 6 cut(s) 130, 148, 230, 504, 825, 947
BciT130I CCWGG 1 cut(s) 44
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 214
BglII AGATCT 2 cut(s) 247, 1103
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 2 cut(s) 281, 860
BmeRI GACNNNNNGTC 1 cut(s) 904
BmgBI CACGTC 2 cut(s) 133, 487
BmgT120I GGNCC 2 cut(s) 281, 860
BmiI GGNNCC 7 cut(s) 282, 283, 388, 410, 504, 862, 952
BmrFI CCNGG 1 cut(s) 44
BoxI GACNNNNGTC 1 cut(s) 485
BpmI CTGGAG 1 cut(s) 173
Bpu14I TTCGAA 1 cut(s) 638
BsaHI GRCGYC 2 cut(s) 387, 509
BsaJI CCNNGG 5 cut(s) 164, 212, 463, 571, 856
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 996, 1026
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 291, 333
Bse118I RCCGGY 1 cut(s) 745
Bse3DI GCAATG 1 cut(s) 783
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 5 cut(s) 164, 212, 463, 571, 856
BseGI GGATG 3 cut(s) 229, 307, 718
BseLI CCNNNNNNNGG 3 cut(s) 152, 291, 333
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 1 cut(s) 661
BseRI GAGGAG 4 cut(s) 176, 384, 396, 642
BseYI CCCAGC 2 cut(s) 201, 284
BsgI GTGCAG 1 cut(s) 463
Bsh1236I CGCG 2 cut(s) 800, 947
BshFI GGCC 3 cut(s) 326, 828, 996
BshNI GGYRCC 1 cut(s) 386
BsiHKAI GWGCWC 2 cut(s) 497, 665
BsiSI CCGG 4 cut(s) 101, 506, 731, 746
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 3 cut(s) 152, 291, 333
BsmAI GTCTC 1 cut(s) 98
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 3 cut(s) 326, 828, 996
Bsp119I TTCGAA 1 cut(s) 638
Bsp1286I GDGCHC 2 cut(s) 497, 665
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 6 cut(s) 73, 247, 296, 790, 1036, 1103
BspANI GGCC 3 cut(s) 326, 828, 996
BspCNI CTCAG 1 cut(s) 660
BspEI TCCGGA 1 cut(s) 100
BspFNI CGCG 2 cut(s) 800, 947
BspLI GGNNCC 7 cut(s) 282, 283, 388, 410, 504, 862, 952
BspPI GGATC 3 cut(s) 304, 798, 1031
BspT104I TTCGAA 1 cut(s) 638
BspT107I GGYRCC 1 cut(s) 386
BsrBI CCGCTC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 783
BsrFI RCCGGY 1 cut(s) 745
BssAI RCCGGY 1 cut(s) 745
BssECI CCNNGG 5 cut(s) 164, 212, 463, 571, 856
BssMI GATC 6 cut(s) 73, 247, 296, 790, 1036, 1103
BssNI GRCGYC 2 cut(s) 387, 509
BssSI CACGAG 1 cut(s) 998
BssT1I CCWWGG 2 cut(s) 571, 856
Bst2BI CACGAG 1 cut(s) 998
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 476, 1030
Bst6I CTCTTC 2 cut(s) 361, 681
BstACI GRCGYC 2 cut(s) 387, 509
BstAPI GCANNNNNTGC 1 cut(s) 450
BstBI TTCGAA 1 cut(s) 638
BstC8I GCNNGC 4 cut(s) 391, 540, 747, 826
BstDEI CTNAG 1 cut(s) 647
BstDSI CCRYGG 2 cut(s) 164, 212
BstF5I GGATG 3 cut(s) 229, 307, 718
BstFNI CGCG 2 cut(s) 800, 947
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 2 cut(s) 389, 776
BstKTI GATC 6 cut(s) 76, 250, 299, 793, 1039, 1106
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 6 cut(s) 73, 247, 296, 790, 1036, 1103
BstNI CCWGG 1 cut(s) 44
BstPAI GACNNNNGTC 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 42
BstUI CGCG 2 cut(s) 800, 947
BstX2I RGATCY 3 cut(s) 247, 1036, 1103
BstYI RGATCY 3 cut(s) 247, 1036, 1103
BsuRI GGCC 3 cut(s) 326, 828, 996
BtgI CCRYGG 2 cut(s) 164, 212
BtgZI GCGATG 2 cut(s) 805, 928
BtrI CACGTC 2 cut(s) 133, 487
BtsCI GGATG 3 cut(s) 229, 307, 718
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 4 cut(s) 391, 540, 747, 826
CfoI GCGC 2 cut(s) 389, 776
Cfr10I RCCGGY 1 cut(s) 745
Cfr13I GGNCC 2 cut(s) 281, 860
CseI GACGC 2 cut(s) 498, 963
Csp6I GTAC 5 cut(s) 118, 148, 796, 802, 1080
CviAII CATG 6 cut(s) 436, 498, 763, 883, 889, 1075
CviQI GTAC 5 cut(s) 118, 148, 796, 802, 1080
DdeI CTNAG 1 cut(s) 647
DinI GGCGCC 1 cut(s) 388
DpnI GATC 6 cut(s) 75, 249, 298, 792, 1038, 1105
DpnII GATC 6 cut(s) 73, 247, 296, 790, 1036, 1103
DraI TTTAAA 1 cut(s) 838
DriI GACNNNNNGTC 1 cut(s) 904
EaeI YGGCCR 2 cut(s) 324, 994
Eam1104I CTCTTC 2 cut(s) 361, 681
Eam1105I GACNNNNNGTC 1 cut(s) 904
EarI CTCTTC 2 cut(s) 361, 681
Ecl136II GAGCTC 1 cut(s) 663
Eco130I CCWWGG 2 cut(s) 571, 856
Eco24I GRGCYC 1 cut(s) 665
Eco47I GGWCC 2 cut(s) 281, 860
Eco53kI GAGCTC 1 cut(s) 663
Eco57I CTGAAG 1 cut(s) 687
EcoICRI GAGCTC 1 cut(s) 663
EcoO109I RGGNCCY 2 cut(s) 281, 860
EcoRI GAATTC 1 cut(s) 843
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 2 cut(s) 571, 856
EcoT38I GRGCYC 1 cut(s) 665
EgeI GGCGCC 1 cut(s) 388
EheI GGCGCC 1 cut(s) 388
ErhI CCWWGG 2 cut(s) 571, 856
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 6 cut(s) 439, 501, 766, 886, 892, 1078
FaqI GGGAC 1 cut(s) 267
FatI CATG 6 cut(s) 435, 497, 762, 882, 888, 1074
FauI CCCGC 5 cut(s) 325, 398, 735, 940, 1009
FbaI TGATCA 1 cut(s) 73
FokI GGATG 3 cut(s) 216, 314, 725
FriOI GRGCYC 1 cut(s) 665
FspBI CTAG 1 cut(s) 272
GlaI GCGC 2 cut(s) 388, 775
GsaI CCCAGC 2 cut(s) 205, 288
GsuI CTGGAG 1 cut(s) 173
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 3 cut(s) 326, 828, 996
HapII CCGG 4 cut(s) 101, 506, 731, 746
HgaI GACGC 2 cut(s) 498, 963
HhaI GCGC 2 cut(s) 389, 776
Hin1I GRCGYC 2 cut(s) 387, 509
Hin1II CATG 6 cut(s) 439, 501, 766, 886, 892, 1078
Hin6I GCGC 2 cut(s) 387, 774
HinP1I GCGC 2 cut(s) 387, 774
HincII GTYRAC 1 cut(s) 967
HindII GTYRAC 1 cut(s) 967
HinfI GANTC 4 cut(s) 622, 645, 667, 866
HpaI GTTAAC 1 cut(s) 967
HpaII CCGG 4 cut(s) 101, 506, 731, 746
HphI GGTGA 2 cut(s) 68, 730
Hpy166II GTNNAC 3 cut(s) 339, 817, 967
Hpy188I TCNGA 4 cut(s) 301, 480, 650, 660
Hpy188III TCNNGA 6 cut(s) 101, 245, 360, 398, 490, 1107
Hpy8I GTNNAC 3 cut(s) 339, 817, 967
Hpy99I CGWCG 5 cut(s) 41, 319, 358, 514, 1027
HpyAV CCTTC 1 cut(s) 1050
HpyCH4III ACNGT 2 cut(s) 476, 1030
HpyCH4IV ACGT 3 cut(s) 107, 132, 486
HpyCH4V TGCA 5 cut(s) 429, 444, 456, 550, 762
HpyF3I CTNAG 1 cut(s) 647
HpySE526I ACGT 3 cut(s) 107, 132, 486
Hsp92I GRCGYC 2 cut(s) 387, 509
Hsp92II CATG 6 cut(s) 439, 501, 766, 886, 892, 1078
HspAI GCGC 2 cut(s) 387, 774
KasI GGCGCC 1 cut(s) 386
KflI GGGWCCC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 100
KroI GCCGGC 1 cut(s) 745
KroNI GCCGGC 1 cut(s) 747
Ksp22I TGATCA 1 cut(s) 73
KspAI GTTAAC 1 cut(s) 967
Kzo9I GATC 6 cut(s) 73, 247, 296, 790, 1036, 1103
LmnI GCTCC 6 cut(s) 103, 178, 189, 198, 950, 1063
MaeI CTAG 1 cut(s) 272
MaeII ACGT 3 cut(s) 107, 132, 486
MaeIII GTNAC 1 cut(s) 468
MalI GATC 6 cut(s) 75, 249, 298, 792, 1038, 1105
MbiI CCGCTC 1 cut(s) 526
MboI GATC 6 cut(s) 73, 247, 296, 790, 1036, 1103
MboII GAAGA 5 cut(s) 378, 430, 668, 1035, 1081
MflI RGATCY 3 cut(s) 247, 1036, 1103
MhlI GDGCHC 2 cut(s) 497, 665
MluCI AATT 6 cut(s) 93, 721, 843, 922, 1062, 1085
MluI ACGCGT 1 cut(s) 798
Mly113I GGCGCC 1 cut(s) 387
MlyI GAGTC 1 cut(s) 639
MmeI TCCRAC 2 cut(s) 503, 952
MroI TCCGGA 1 cut(s) 100
MroNI GCCGGC 1 cut(s) 745
MseI TTAA 5 cut(s) 837, 921, 936, 966, 1065
MslI CAYNNNNRTG 4 cut(s) 434, 767, 887, 1073
MspA1I CMGCKG 3 cut(s) 332, 393, 896
MspI CCGG 4 cut(s) 101, 506, 731, 746
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 2 cut(s) 800, 947
NaeI GCCGGC 1 cut(s) 747
NarI GGCGCC 1 cut(s) 387
NdeII GATC 6 cut(s) 73, 247, 296, 790, 1036, 1103
NgoMIV GCCGGC 1 cut(s) 745
NlaIII CATG 6 cut(s) 439, 501, 766, 886, 892, 1078
NlaIV GGNNCC 7 cut(s) 282, 283, 388, 410, 504, 862, 952
NspV TTCGAA 1 cut(s) 638
PdiI GCCGGC 1 cut(s) 747
PfeI GAWTC 3 cut(s) 622, 667, 866
PleI GAGTC 1 cut(s) 639
PluTI GGCGCC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 639
PpuMI RGGWCCY 2 cut(s) 281, 860
PshAI GACNNNNGTC 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 665
Psp5II RGGWCCY 2 cut(s) 281, 860
Psp6I CCWGG 1 cut(s) 42
PspFI CCCAGC 2 cut(s) 201, 284
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 7 cut(s) 282, 283, 388, 410, 504, 862, 952
PspPI GGNCC 2 cut(s) 281, 860
PspPPI RGGWCCY 2 cut(s) 281, 860
PsuI RGATCY 3 cut(s) 247, 1036, 1103
PvuII CAGCTG 2 cut(s) 393, 896
RsaI GTAC 5 cut(s) 119, 149, 797, 803, 1081
RsaNI GTAC 5 cut(s) 118, 148, 796, 802, 1080
RseI CAYNNNNRTG 4 cut(s) 434, 767, 887, 1073
SacI GAGCTC 1 cut(s) 665
SaqAI TTAA 5 cut(s) 837, 921, 936, 966, 1065
Sau3AI GATC 6 cut(s) 73, 247, 296, 790, 1036, 1103
Sau96I GGNCC 2 cut(s) 281, 860
SchI GAGTC 1 cut(s) 639
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 2 cut(s) 497, 665
SfoI GGCGCC 1 cut(s) 388
SfuI TTCGAA 1 cut(s) 638
SinI GGWCC 2 cut(s) 281, 860
SmiMI CAYNNNNRTG 4 cut(s) 434, 767, 887, 1073
Sse9I AATT 6 cut(s) 93, 721, 843, 922, 1062, 1085
SspDI GGCGCC 1 cut(s) 386
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 665
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 2 cut(s) 571, 856
TaaI ACNGT 2 cut(s) 476, 1030
TaiI ACGT 3 cut(s) 110, 135, 489
TaqI TCGA 7 cut(s) 159, 317, 512, 625, 638, 665, 1022
TasI AATT 6 cut(s) 93, 721, 843, 922, 1062, 1085
TauI GCSGC 8 cut(s) 33, 70, 208, 266, 529, 545, 956, 996
TfiI GAWTC 3 cut(s) 622, 667, 866
Tru1I TTAA 5 cut(s) 837, 921, 936, 966, 1065
Tru9I TTAA 5 cut(s) 837, 921, 936, 966, 1065
TscAI CASTG 1 cut(s) 479
TspDTI ATGAA 3 cut(s) 300, 779, 899
TspRI CASTG 1 cut(s) 479
VpaK11BI GGWCC 2 cut(s) 281, 860
XapI RAATTY 2 cut(s) 721, 843
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.