AT3G51320

pentatricopeptide

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
19049543 .. 19051647
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51320.1

Sequence Viewer

Length: 1593 bp
ATGGCAAAAGCTTCCTCTATTCGCCAATTCGTCACATCCAGATTCATCGTCCCCGGAACGGGTCTGCTTAAGGGTTTCAAACTTGTCGAAGATTCCAACTCTATTACACACCTCTTCCAAGTCCACGCGAGGCTAATCACCTCCGGTAACTTCTGGGATTCATCTTGGGCTATCAGATTGTTGAAGTCTTCTTCGCGTTTTGGTGATTCTAGCTACACCGTTTCGATATACCGCAGCATTGGCAAGCTTTACTGCGCAAATCCCGTCTTTAAGGCTTATTTGGTCTCGTCTTCTCCGAAACAAGCGTTGGGGTTTTACTTCGATATACTAAGATTTGGTTTTGTTCCTGATTCATACACCTTCGTTTCGTTGATTAGTTGTATTGAGAAGACTTGTTGCGTTGATTCTGGTAAAATGTGTCATGGGCAAGCCATTAAGCATGGATGCGATCAAGTTTTGCCTGTTCAAAATTCGTTAATGCATATGTATACTTGTTGTGGTGCTTTGGATCTTGCAAAGAAGCTGTTTGTTGAAATTCCTAAGAGAGATATTGTGTCCTGGAACTCTATAATAGCTGGGATGGTGAGGAATGGTGATGTTTTGGCTGCACACAAGTTGTTCGATGAAATGCCTGACAAAAACATTATTTCTTGGAATATCATGATTAGTGCTTATTTGGGTGCGAATAATCCTGGAGTTTCCATTAGTTTGTTCCGTGAGATGGTCAGAGCAGGGTTCCAAGGAAATGAGAGTACGTTGGTTTTGTTGTTGAATGCTTGTGGTAGATCAGCTAGATTGAAGGAAGGTAGGTCGGTTCATGCTTCTTTGATAAGAACCTTTCTGAATTCGAGTGTAGTTATTGATACAGCTCTTATTGACATGTATGGAAAGTGCAAGGAAGTAGGTTTAGCACGTAGGATATTCGATAGTCTATCTATTAGAAACAAAGTTACTTGGAATGTGATGATATTGGCACATTGTCTTCACGGGCGTCCTGAAGGTGGGCTCGAGTTATTTGAAGCCATGATCAATGGTATGCTTAGACCCGATGAAGTGACATTTGTTGGTGTTCTCTGCGGTTGTGCTAGAGCTGGGCTTGTTTCTCAAGGACAAAGTTACTATTCTCTGATGGTTGATGAGTTCCAGATCAAACCCAACTTTGGACACCAATGGTGCATGGCTAATCTTTACTCCAGCGCCGGGTTCCCTGAAGAAGCAGAGGAAGCTCTGAAGAATCTGCCAGATGAAGATGTGACACCAGAATCTACAAAGTGGGCAAACTTGCTCAGCTCGTCGCGTTTTACAGGAAACCCGACTCTAGGGGAGAGCATTGCCAAGTCCCTGATAGAGACAGATCCTTTGAACTACAAGTATTACCATTTGCTGATGAATATTTACAGTGTTACGGGACGGTGGGAGGATGTTAATAGAGTGAGAGAGATGGTGAAGGAGAGGAAAATAGGACGAATACCCGGGTGTGGCCTTGTGGACTTGAAGGAGATAGTCCATGGCCTTAGACTAGGATGCAAAGAAGCAGAAAAGGTGTTCACTGAGACTAGTTTAGAAAAATGCTACAGTGATTCACCGTCATAA

Protein Analysis

530

Amino Acids

58.98

Weight (kDa)

8.45

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 182 - 215 2.3e-08 PPR repeat family
PPR PF01535 185 - 215 1.4e-06 PPR repeat
PPR_2 PF13041 213 - 261 2.5e-08 PPR repeat family
PPR_2 PF13041 315 - 363 1.2e-08 PPR repeat family
E_motif PF20431 440 - 496 4.7e-12 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013087)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 256
AccI GTMKAC 1 cut(s) 488
AccII CGCG 3 cut(s) 128, 196, 1297
AciI CCGC 2 cut(s) 232, 1077
AclWI GGATC 2 cut(s) 516, 1349
AcsI RAATTY 3 cut(s) 469, 534, 844
AcuI CTGAAG 3 cut(s) 1017, 1230, 1250
AcyI GRCGYC 1 cut(s) 991
AfaI GTAC 1 cut(s) 754
AfiI CCNNNNNNNGG 8 cut(s) 58, 59, 721, 1001, 1160, 1200, 1319, 1478
AflII CTTAAG 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 879
AgsI TTSAA 9 cut(s) 79, 184, 467, 533, 772, 799, 1019, 1363, 1495
AhlI ACTAGT 1 cut(s) 1556
AjnI CCWGG 2 cut(s) 557, 691
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
Alw26I GTCTC 3 cut(s) 289, 1343, 1547
AlwI GGATC 2 cut(s) 516, 1349
Ama87I CYCGRG 2 cut(s) 1007, 1472
AoxI GGCC 2 cut(s) 1480, 1510
ApeKI GCWGC 2 cut(s) 234, 605
ApoI RAATTY 3 cut(s) 469, 534, 844
ArsI GACNNNNNNTTYG 2 cut(s) 1342, 1374
AspLEI GCGC 2 cut(s) 257, 1199
AsuC2I CCSGG 4 cut(s) 54, 1201, 1473, 1474
AsuHPI GGTGA 6 cut(s) 130, 215, 595, 605, 1456, 1575
AvaI CYCGRG 2 cut(s) 1007, 1472
BanII GRGCYC 1 cut(s) 1008
BbsI GAAGAC 4 cut(s) 180, 282, 395, 974
BbvI GCAGC 2 cut(s) 246, 592
BccI CCATC 4 cut(s) 574, 715, 1123, 1435
BciT130I CCWGG 2 cut(s) 559, 693
BclI TGATCA 1 cut(s) 1026
BcnI CCSGG 4 cut(s) 54, 1201, 1473, 1474
BcoDI GTCTC 3 cut(s) 289, 1343, 1547
BcuI ACTAGT 1 cut(s) 1556
BfaI CTAG 6 cut(s) 210, 792, 1086, 1319, 1520, 1557
BfmI CTRYAG 1 cut(s) 1573
BfoI RGCGCY 1 cut(s) 1200
BfrI CTTAAG 1 cut(s) 68
BisI GCNGC 2 cut(s) 235, 606
BlpI GCTNAGC 1 cut(s) 1286
BlsI GCNGC 2 cut(s) 236, 607
Bme1390I CCNGG 6 cut(s) 54, 559, 693, 1201, 1473, 1474
BmeT110I CYCGRG 2 cut(s) 1007, 1472
BmiI GGNNCC 2 cut(s) 737, 1205
BmrFI CCNGG 6 cut(s) 54, 559, 693, 1201, 1473, 1474
BmsI GCATC 2 cut(s) 434, 1514
BpiI GAAGAC 4 cut(s) 180, 282, 395, 974
BpmI CTGGAG 2 cut(s) 714, 1177
Bpu1102I GCTNAGC 1 cut(s) 1286
BpuEI CTTGAG 1 cut(s) 1089
BpuMI CCSGG 4 cut(s) 54, 1201, 1473, 1474
BsaAI YACGTR 1 cut(s) 914
BsaHI GRCGYC 1 cut(s) 991
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 4 cut(s) 52, 739, 1472, 1507
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 8 cut(s) 58, 59, 721, 1001, 1160, 1200, 1319, 1478
Bse3DI GCAATG 1 cut(s) 1329
BseBI CCWGG 2 cut(s) 559, 693
BseDI CCNNGG 4 cut(s) 52, 739, 1472, 1507
BseGI GGATG 5 cut(s) 35, 449, 585, 1426, 1529
BseLI CCNNNNNNNGG 8 cut(s) 58, 59, 721, 1001, 1160, 1200, 1319, 1478
BseMI GCAATG 1 cut(s) 1329
BseMII CTCAG 2 cut(s) 1300, 1542
BseXI GCAGC 2 cut(s) 246, 592
BseYI CCCAGC 2 cut(s) 575, 1091
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 3 cut(s) 128, 196, 1297
BshFI GGCC 2 cut(s) 1482, 1512
BsiHKCI CYCGRG 2 cut(s) 1007, 1472
BsiSI CCGG 4 cut(s) 54, 144, 1200, 1473
BslFI GGGAC 3 cut(s) 35, 1324, 1422
BslI CCNNNNNNNGG 8 cut(s) 58, 59, 721, 1001, 1160, 1200, 1319, 1478
BsmAI GTCTC 3 cut(s) 289, 1343, 1547
BsmFI GGGAC 3 cut(s) 35, 1324, 1422
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 2 cut(s) 1482, 1512
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 2 cut(s) 1007, 1472
Bsp1286I GDGCHC 1 cut(s) 1008
Bsp143I GATC 6 cut(s) 448, 508, 785, 1026, 1146, 1354
Bsp1720I GCTNAGC 1 cut(s) 1286
Bsp19I CCATGG 1 cut(s) 1507
BspACI CCGC 2 cut(s) 232, 1077
BspANI GGCC 2 cut(s) 1482, 1512
BspCNI CTCAG 2 cut(s) 1299, 1543
BspFNI CGCG 3 cut(s) 128, 196, 1297
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 2 cut(s) 737, 1205
BspPI GGATC 2 cut(s) 516, 1349
BspTI CTTAAG 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 1329
BssECI CCNNGG 4 cut(s) 52, 739, 1472, 1507
BssMI GATC 6 cut(s) 448, 508, 785, 1026, 1146, 1354
BssNAI GTATAC 1 cut(s) 489
BssNI GRCGYC 1 cut(s) 991
BssT1I CCWWGG 2 cut(s) 739, 1507
Bst1107I GTATAC 1 cut(s) 489
Bst2UI CCWGG 2 cut(s) 559, 693
Bst4CI ACNGT 5 cut(s) 220, 1400, 1413, 1577, 1587
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 991
BstAFI CTTAAG 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 914
BstC8I GCNNGC 2 cut(s) 245, 429
BstDEI CTNAG 6 cut(s) 329, 540, 1040, 1286, 1514, 1551
BstDSI CCRYGG 1 cut(s) 1507
BstF5I GGATG 5 cut(s) 35, 449, 585, 1426, 1529
BstFNI CGCG 3 cut(s) 128, 196, 1297
BstH2I RGCGCY 1 cut(s) 1200
BstHHI GCGC 2 cut(s) 257, 1199
BstKTI GATC 6 cut(s) 451, 511, 788, 1029, 1149, 1357
BstMAI GTCTC 3 cut(s) 289, 1343, 1547
BstMBI GATC 6 cut(s) 448, 508, 785, 1026, 1146, 1354
BstMWI GCNNNNNNNGC 2 cut(s) 240, 1223
BstNI CCWGG 2 cut(s) 559, 693
BstNSI RCATGY 1 cut(s) 883
BstSCI CCNGG 6 cut(s) 52, 557, 691, 1199, 1471, 1472
BstSFI CTRYAG 1 cut(s) 1573
BstUI CGCG 3 cut(s) 128, 196, 1297
BstV1I GCAGC 2 cut(s) 246, 592
BstV2I GAAGAC 4 cut(s) 180, 282, 395, 974
BstX2I RGATCY 2 cut(s) 508, 1354
BstYI RGATCY 2 cut(s) 508, 1354
BstZ17I GTATAC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 1482, 1512
BtgI CCRYGG 1 cut(s) 1507
BtsCI GGATG 5 cut(s) 35, 449, 585, 1426, 1529
BtsIMutI CAGTG 3 cut(s) 1405, 1548, 1582
Cac8I GCNNGC 2 cut(s) 245, 429
CciI TCATGA 1 cut(s) 660
CfoI GCGC 2 cut(s) 257, 1199
Cfr9I CCCGGG 1 cut(s) 1472
CseI GACGC 1 cut(s) 980
Csp6I GTAC 1 cut(s) 753
CviAII CATG 8 cut(s) 422, 440, 661, 818, 880, 1024, 1177, 1508
CviQI GTAC 1 cut(s) 753
DdeI CTNAG 6 cut(s) 329, 540, 1040, 1286, 1514, 1551
DpnI GATC 6 cut(s) 450, 510, 787, 1028, 1148, 1356
DpnII GATC 6 cut(s) 448, 508, 785, 1026, 1146, 1354
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 2 cut(s) 739, 1507
Eco24I GRGCYC 1 cut(s) 1008
Eco31I GGTCTC 1 cut(s) 289
Eco57I CTGAAG 3 cut(s) 1017, 1230, 1250
Eco88I CYCGRG 2 cut(s) 1007, 1472
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 2 cut(s) 557, 691
EcoT14I CCWWGG 2 cut(s) 739, 1507
EcoT22I ATGCAT 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 1008
ErhI CCWWGG 2 cut(s) 739, 1507
FaeI CATG 8 cut(s) 425, 443, 664, 821, 883, 1027, 1180, 1511
FaqI GGGAC 3 cut(s) 35, 1324, 1422
FatI CATG 8 cut(s) 421, 439, 660, 817, 879, 1023, 1176, 1507
FauNDI CATATG 1 cut(s) 483
FbaI TGATCA 1 cut(s) 1026
FblI GTMKAC 1 cut(s) 488
Fnu4HI GCNGC 2 cut(s) 235, 606
FokI GGATG 5 cut(s) 22, 456, 592, 1433, 1536
FriOI GRGCYC 1 cut(s) 1008
Fsp4HI GCNGC 2 cut(s) 235, 606
FspBI CTAG 6 cut(s) 210, 792, 1086, 1319, 1520, 1557
FspI TGCGCA 1 cut(s) 256
GlaI GCGC 2 cut(s) 256, 1198
GluI GCNGC 2 cut(s) 235, 606
GsaI CCCAGC 2 cut(s) 579, 1095
GsuI CTGGAG 2 cut(s) 714, 1177
HaeII RGCGCY 1 cut(s) 1200
HaeIII GGCC 2 cut(s) 1482, 1512
HapII CCGG 4 cut(s) 54, 144, 1200, 1473
HgaI GACGC 1 cut(s) 980
HhaI GCGC 2 cut(s) 257, 1199
Hin1I GRCGYC 1 cut(s) 991
Hin1II CATG 8 cut(s) 425, 443, 664, 821, 883, 1027, 1180, 1511
Hin6I GCGC 2 cut(s) 255, 1197
HinP1I GCGC 2 cut(s) 255, 1197
HindIII AAGCTT 2 cut(s) 9, 245
HpaII CCGG 4 cut(s) 54, 144, 1200, 1473
HphI GGTGA 6 cut(s) 130, 215, 595, 605, 1456, 1575
Hpy166II GTNNAC 4 cut(s) 124, 489, 1489, 1548
Hpy188I TCNGA 6 cut(s) 176, 297, 728, 843, 1128, 1230
Hpy188III TCNNGA 5 cut(s) 39, 347, 661, 995, 1144
Hpy8I GTNNAC 4 cut(s) 124, 489, 1489, 1548
Hpy99I CGWCG 1 cut(s) 1297
HpyAV CCTTC 6 cut(s) 370, 793, 797, 992, 1441, 1489
HpyCH4III ACNGT 5 cut(s) 220, 1400, 1413, 1577, 1587
HpyCH4IV ACGT 2 cut(s) 755, 913
HpyCH4V TGCA 6 cut(s) 481, 515, 608, 894, 1176, 1527
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 1223
HpyF3I CTNAG 6 cut(s) 329, 540, 1040, 1286, 1514, 1551
HpySE526I ACGT 2 cut(s) 755, 913
Hsp92I GRCGYC 1 cut(s) 991
Hsp92II CATG 8 cut(s) 425, 443, 664, 821, 883, 1027, 1180, 1511
HspAI GCGC 2 cut(s) 255, 1197
Ksp22I TGATCA 1 cut(s) 1026
Kzo9I GATC 6 cut(s) 448, 508, 785, 1026, 1146, 1354
Lsp1109I GCAGC 2 cut(s) 246, 592
LweI GCATC 2 cut(s) 434, 1514
MaeI CTAG 6 cut(s) 210, 792, 1086, 1319, 1520, 1557
MaeII ACGT 2 cut(s) 755, 913
MaeIII GTNAC 7 cut(s) 31, 146, 949, 1054, 1115, 1252, 1402
MalI GATC 6 cut(s) 450, 510, 787, 1028, 1148, 1356
MboI GATC 6 cut(s) 448, 508, 785, 1026, 1146, 1354
MflI RGATCY 2 cut(s) 508, 1354
MhlI GDGCHC 1 cut(s) 1008
MluCI AATT 4 cut(s) 26, 469, 534, 844
MlyI GAGTC 1 cut(s) 1309
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 8 cut(s) 25, 122, 123, 151, 579, 1213, 1411, 1446
Mph1103I ATGCAT 1 cut(s) 483
MseI TTAA 5 cut(s) 69, 270, 435, 476, 1425
MspCI CTTAAG 1 cut(s) 68
MspI CCGG 4 cut(s) 54, 144, 1200, 1473
MspR9I CCNGG 6 cut(s) 54, 559, 693, 1201, 1473, 1474
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 2 cut(s) 559, 693
MvnI CGCG 3 cut(s) 128, 196, 1297
MwoI GCNNNNNNNGC 2 cut(s) 240, 1223
NciI CCSGG 4 cut(s) 54, 1201, 1473, 1474
NcoI CCATGG 1 cut(s) 1507
NdeI CATATG 1 cut(s) 483
NdeII GATC 6 cut(s) 448, 508, 785, 1026, 1146, 1354
NlaIII CATG 8 cut(s) 425, 443, 664, 821, 883, 1027, 1180, 1511
NlaIV GGNNCC 2 cut(s) 737, 1205
NmuCI GTSAC 3 cut(s) 31, 1054, 1252
NsbI TGCGCA 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 483
NspI RCATGY 1 cut(s) 883
PaeR7I CTCGAG 1 cut(s) 1007
PagI TCATGA 1 cut(s) 660
PciI ACATGT 1 cut(s) 879
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PctI GAATGC 1 cut(s) 778
PfeI GAWTC 9 cut(s) 42, 92, 158, 206, 350, 404, 1234, 1262, 1580
PfoI TCCNGGA 2 cut(s) 557, 691
PkrI GCNGC 2 cut(s) 236, 607
PleI GAGTC 1 cut(s) 1309
PpsI GAGTC 1 cut(s) 1309
Ppu21I YACGTR 1 cut(s) 914
PscI ACATGT 1 cut(s) 879
Psp6I CCWGG 2 cut(s) 557, 691
PspFI CCCAGC 2 cut(s) 575, 1091
PspGI CCWGG 2 cut(s) 557, 691
PspN4I GGNNCC 2 cut(s) 737, 1205
PspXI VCTCGAGB 1 cut(s) 1007
PsuI RGATCY 2 cut(s) 508, 1354
RsaI GTAC 1 cut(s) 754
RsaNI GTAC 1 cut(s) 753
SaqAI TTAA 5 cut(s) 69, 270, 435, 476, 1425
SatI GCNGC 2 cut(s) 235, 606
Sau3AI GATC 6 cut(s) 448, 508, 785, 1026, 1146, 1354
SchI GAGTC 1 cut(s) 1309
ScrFI CCNGG 6 cut(s) 54, 559, 693, 1201, 1473, 1474
SduI GDGCHC 1 cut(s) 1008
SfaNI GCATC 2 cut(s) 434, 1514
SfcI CTRYAG 1 cut(s) 1573
Sfr274I CTCGAG 1 cut(s) 1007
SlaI CTCGAG 1 cut(s) 1007
SmaI CCCGGG 1 cut(s) 1474
SmlI CTYRAG 3 cut(s) 68, 1007, 1104
SmoI CTYRAG 3 cut(s) 68, 1007, 1104
SpeI ACTAGT 1 cut(s) 1556
Sse9I AATT 4 cut(s) 26, 469, 534, 844
SsiI CCGC 2 cut(s) 232, 1077
SspI AATATT 1 cut(s) 1393
SspMI CTAG 6 cut(s) 210, 792, 1086, 1319, 1520, 1557
StyD4I CCNGG 6 cut(s) 52, 557, 691, 1199, 1471, 1472
StyI CCWWGG 2 cut(s) 739, 1507
TaaI ACNGT 5 cut(s) 220, 1400, 1413, 1577, 1587
TaiI ACGT 2 cut(s) 758, 916
TaqI TCGA 7 cut(s) 87, 224, 321, 621, 848, 924, 1008
TasI AATT 4 cut(s) 26, 469, 534, 844
TfiI GAWTC 9 cut(s) 42, 92, 158, 206, 350, 404, 1234, 1262, 1580
Tru1I TTAA 5 cut(s) 69, 270, 435, 476, 1425
Tru9I TTAA 5 cut(s) 69, 270, 435, 476, 1425
TscAI CASTG 3 cut(s) 1405, 1555, 1582
TseFI GTSAC 3 cut(s) 31, 1054, 1252
TseI GCWGC 2 cut(s) 234, 605
Tsp45I GTSAC 3 cut(s) 31, 1054, 1252
TspDTI ATGAA 8 cut(s) 34, 150, 342, 639, 806, 1065, 1260, 1403
TspGWI ACGGA 1 cut(s) 704
TspMI CCCGGG 1 cut(s) 1472
TspRI CASTG 3 cut(s) 1405, 1555, 1582
Vha464I CTTAAG 1 cut(s) 68
XapI RAATTY 3 cut(s) 469, 534, 844
XceI RCATGY 1 cut(s) 883
XhoI CTCGAG 1 cut(s) 1007
XmaI CCCGGG 1 cut(s) 1472
XmiI GTMKAC 1 cut(s) 488
XspI CTAG 6 cut(s) 210, 792, 1086, 1319, 1520, 1557
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.