Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002776.1

Orthogroup ID

OG0013087

Physical Location & Seq

Genomic Coordinates Forward (+)

150507 .. 151982

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002776.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

atgcacacccaattgatcacttggggtcttttcgattcgttctgggcaagaaagctactcaagagctattgggattatggcgatataaattttacgattctgaccttcaggcacattgaaaagcctggtgctttctgcgtcaacacggtgattaaggctcattcggatagctcagagccgggtcgggctctggtggtctatttcgaatggctgagaagagggtttgctcccaccagctatagtttcgtgccgcttttcggggcttgtagtaagttgggtgatgtcgagtgtgggaggaaatgccatgggcaggttttgaagcatggggttgagtctgtgctgcctgtggggaactctttgattcatatgtattgttgttgtgggagagttgagcttgctaggaaggtgtttgatgaaatgcctaagagagacgtggtgtcgtggaatgcgattgtggatgggtatgctaggtttggggatttgaatgtcgctcatatggtgtttgatgcaatgcctgagagaaatgtggttgcttggaatgctatgcttggtgggtattggaagggagggaagccggggtgtgcgttgaagttgtttagggatatggtgcggatgggaatgaaggctgatagtaccgcaatggtgaatatgctcgcggcttgtggtcggtccggtagactgaaagaaggaagatcagttcatggatatctaattagggcattcactgagttgaacgttgttgttgaaacggctttgatcgatatgtattgtaaatgcaaaagggtggaagtggcgcgtctagtgtttgagagcatggcatataggaacttggtttgctggaatgctatgattttggggcattgttttgagggaaatcctgaagatggacttagcctgtttagtgaaatgtcaggtagaacagagtcaaacgatggggaaaccatccctgagaataggttgtcgaggccaaccaaaggcagagggggaattcttccggatgaaactactttcataggtgttctttgtgcctgtgcgcgtgctggattgttaagagaagcccgagattacttcaggcaaatgattaatgttttccatttgaagccccggtttgcacattattggtgcatggctaatgtttatgttggtgtggggctaatacaagaggcagaggaaatgatcaggaaaatgccagaggttgctgaagatttgacaaaagaatccttggcatgggctaacgtgcttggttcatgtcgtttccaaaaagatgttactgtgggagaacaaattgcaatatctctgattgacatggaacctcaaaacattgcatactacagattgttgctgaatgtctatgctgccgcgggccaatgggaggatgttgcttgggtgaaagaaatgatgaaagaaaacaaggtcagaaggctacctggctgcaatcttgtagacctgaacgaaatagttcataagagttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

491

Amino Acids

55.55

Weight (kDa)

8.2

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51320
malus_domestica	MD15G1241200.v1.1
prunus_persica	Prupe.7G172800_v2.0.a1
pyrus_communis	pycom02g09790 pycom15g21270
rosa_chinensis	RchiOBHm_Chr2g0098771
rosa_laevigata	RLG00000016826 RLG00000037003
rosa_multiflora	Rmu_sc0002776.1_g000032 Rmu_sc0004816.1_g000008
rosa_roxburghii	Rroxscaffold_2G00143720
rosa_rugosa	Rorug02G0074800
rosa_samantha	Rh2AG122400 Rh2BG126100 Rh2CG127000 Rh2DG128100 Rh7DG389800
rosa_wichuraiana	Rw0G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	301
AccI	GTMKAC	2 cut(s)	676, 1443
AccII	CGCG	4 cut(s)	656, 796, 1036, 1361
AccIII	TCCGGA	1 cut(s)	994
AciI	CCGC	6 cut(s)	251, 610, 636, 656, 1359, 1361
AclI	AACGTT	1 cut(s)	735
AcsI	RAATTY	2 cut(s)	88, 987
AcuI	CTGAAG	4 cut(s)	91, 900, 1054, 1221
AfaI	GTAC	1 cut(s)	634
AfiI	CCNNNNNNNGG	6 cut(s)	257, 310, 884, 974, 1227, 1372
AgsI	TTSAA	7 cut(s)	119, 319, 484, 589, 733, 746, 1099
AhdI	GACNNNNNGTC	1 cut(s)	436
AjiI	CACGTC	1 cut(s)	433
AjnI	CCWGG	2 cut(s)	124, 1426
AloI	GAACNNNNNNTCC	2 cut(s)	681, 713
AluBI	AGCT	5 cut(s)	55, 66, 171, 237, 394
AluI	AGCT	5 cut(s)	55, 66, 171, 237, 394
Alw26I	GTCTC	1 cut(s)	423
Ama87I	CYCGRG	1 cut(s)	1059
Aor13HI	TCCGGA	1 cut(s)	994
AoxI	GGCC	2 cut(s)	965, 1363
ApeKI	GCWGC	3 cut(s)	340, 1355, 1431
ApoI	RAATTY	2 cut(s)	88, 987
AseI	ATTAAT	1 cut(s)	1083
Asp700I	GAANNNNTTC	1 cut(s)	1458
AspLEI	GCGC	2 cut(s)	796, 1036
AspS9I	GGNCC	2 cut(s)	669, 1363
AsuC2I	CCSGG	3 cut(s)	180, 576, 1105
AsuHPI	GGTGA	4 cut(s)	160, 290, 655, 1399
AsuII	TTCGAA	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	1059
AvaII	GGWCC	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	327, 1342, 1418
BccI	CCATC	5 cut(s)	452, 607, 878, 926, 950
BceAI	ACGGC	1 cut(s)	765
BciT130I	CCWGG	2 cut(s)	126, 1428
BclI	TGATCA	2 cut(s)	15, 1176
BcnI	CCSGG	3 cut(s)	180, 576, 1105
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	3 cut(s)	399, 468, 800
BfmI	CTRYAG	2 cut(s)	238, 1330
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	6 cut(s)	251, 341, 657, 1356, 1359, 1432
BlsI	GCNGC	6 cut(s)	252, 342, 658, 1357, 1360, 1433
Bme1390I	CCNGG	5 cut(s)	126, 180, 576, 1105, 1428
Bme18I	GGWCC	1 cut(s)	669
BmeRI	GACNNNNNGTC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	1059
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	669, 1363
BmiI	GGNNCC	1 cut(s)	1311
BmrFI	CCNGG	5 cut(s)	126, 180, 576, 1105, 1428
BmsI	GCATC	1 cut(s)	496
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	3 cut(s)	180, 576, 1105
Bsa29I	ATCGAT	1 cut(s)	759
BsaJI	CCNNGG	5 cut(s)	304, 575, 1103, 1221, 1359
BsaWI	WCCGGW	2 cut(s)	671, 994
Bsc4I	CCNNNNNNNGG	6 cut(s)	257, 310, 884, 974, 1227, 1372
Bse3DI	GCAATG	3 cut(s)	516, 645, 1320
BseAI	TCCGGA	1 cut(s)	994
BseBI	CCWGG	2 cut(s)	126, 1428
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	5 cut(s)	304, 575, 1103, 1221, 1359
BseGI	GGATG	5 cut(s)	463, 618, 942, 1003, 1381
BseLI	CCNNNNNNNGG	6 cut(s)	257, 310, 884, 974, 1227, 1372
BseMI	GCAATG	3 cut(s)	516, 645, 1320
BseMII	CTCAG	5 cut(s)	186, 203, 507, 717, 939
BseXI	GCAGC	3 cut(s)	327, 1342, 1418
Bsh1236I	CGCG	4 cut(s)	656, 796, 1036, 1361
BshFI	GGCC	2 cut(s)	967, 1365
BshVI	ATCGAT	1 cut(s)	759
BsiHKCI	CYCGRG	1 cut(s)	1059
BsiSI	CCGG	5 cut(s)	179, 575, 672, 995, 1105
BslI	CCNNNNNNNGG	6 cut(s)	257, 310, 884, 974, 1227, 1372
BsmAI	GTCTC	1 cut(s)	423
BsmBI	CGTCTC	1 cut(s)	423
BsmI	GAATGC	4 cut(s)	451, 544, 719, 847
BsnI	GGCC	2 cut(s)	967, 1365
BsoBI	CYCGRG	1 cut(s)	1059
Bsp119I	TTCGAA	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	994
Bsp143I	GATC	4 cut(s)	15, 692, 756, 1176
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	6 cut(s)	251, 610, 636, 656, 1359, 1361
BspANI	GGCC	2 cut(s)	967, 1365
BspCNI	CTCAG	5 cut(s)	185, 204, 508, 718, 940
BspDI	ATCGAT	1 cut(s)	759
BspEI	TCCGGA	1 cut(s)	994
BspFNI	CGCG	4 cut(s)	656, 796, 1036, 1361
BspLI	GGNNCC	1 cut(s)	1311
BspMI	ACCTGC	1 cut(s)	301
BspT104I	TTCGAA	1 cut(s)	204
BsrDI	GCAATG	3 cut(s)	516, 645, 1320
BssECI	CCNNGG	5 cut(s)	304, 575, 1103, 1221, 1359
BssMI	GATC	4 cut(s)	15, 692, 756, 1176
BssT1I	CCWWGG	2 cut(s)	304, 1221
Bst2UI	CCWGG	2 cut(s)	126, 1428
Bst4CI	ACNGT	2 cut(s)	148, 1273
Bst6I	CTCTTC	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	4 cut(s)	396, 654, 1038, 1363
BstDEI	CTNAG	7 cut(s)	172, 212, 423, 516, 726, 890, 948
BstDSI	CCRYGG	2 cut(s)	304, 1359
BstF5I	GGATG	5 cut(s)	463, 618, 942, 1003, 1381
BstFNI	CGCG	4 cut(s)	656, 796, 1036, 1361
BstHHI	GCGC	2 cut(s)	796, 1036
BstKTI	GATC	4 cut(s)	18, 695, 759, 1179
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	4 cut(s)	15, 692, 756, 1176
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	2 cut(s)	126, 1428
BstSCI	CCNGG	5 cut(s)	124, 178, 574, 1103, 1426
BstSFI	CTRYAG	2 cut(s)	238, 1330
BstUI	CGCG	4 cut(s)	656, 796, 1036, 1361
BstV1I	GCAGC	3 cut(s)	327, 1342, 1418
Bsu15I	ATCGAT	1 cut(s)	759
BsuRI	GGCC	2 cut(s)	967, 1365
BsuTUI	ATCGAT	1 cut(s)	759
BtgI	CCRYGG	2 cut(s)	304, 1359
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	5 cut(s)	463, 618, 942, 1003, 1381
BtsIMutI	CAGTG	1 cut(s)	723
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	4 cut(s)	396, 654, 1038, 1363
CfoI	GCGC	2 cut(s)	796, 1036
Cfr13I	GGNCC	2 cut(s)	669, 1363
Cfr42I	CCGCGG	1 cut(s)	1362
ClaI	ATCGAT	1 cut(s)	759
CpoI	CGGWCCG	1 cut(s)	669
CseI	GACGC	2 cut(s)	127, 785
Csp6I	GTAC	1 cut(s)	633
CspI	CGGWCCG	1 cut(s)	669
CviAII	CATG	8 cut(s)	305, 323, 701, 814, 1126, 1227, 1248, 1306
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	7 cut(s)	172, 212, 423, 516, 726, 890, 948
DpnI	GATC	4 cut(s)	17, 694, 758, 1178
DpnII	GATC	4 cut(s)	15, 692, 756, 1176
DriI	GACNNNNNGTC	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	211
Eam1105I	GACNNNNNGTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	304, 1221
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	669
Eco57I	CTGAAG	4 cut(s)	91, 900, 1054, 1221
Eco88I	CYCGRG	1 cut(s)	1059
EcoRI	GAATTC	1 cut(s)	987
EcoRII	CCWGG	2 cut(s)	124, 1426
EcoRV	GATATC	1 cut(s)	707
EcoT14I	CCWWGG	2 cut(s)	304, 1221
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	304, 1221
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	8 cut(s)	308, 326, 704, 817, 1129, 1230, 1251, 1309
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FatI	CATG	8 cut(s)	304, 322, 700, 813, 1125, 1226, 1247, 1305
FauI	CCCGC	1 cut(s)	1354
FauNDI	CATATG	2 cut(s)	366, 495
FbaI	TGATCA	2 cut(s)	15, 1176
FblI	GTMKAC	2 cut(s)	676, 1443
Fnu4HI	GCNGC	6 cut(s)	251, 341, 657, 1356, 1359, 1432
FokI	GGATG	5 cut(s)	470, 625, 929, 1010, 1388
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	6 cut(s)	251, 341, 657, 1356, 1359, 1432
FspBI	CTAG	3 cut(s)	399, 468, 800
GlaI	GCGC	2 cut(s)	795, 1035
GluI	GCNGC	6 cut(s)	251, 341, 657, 1356, 1359, 1432
HaeIII	GGCC	2 cut(s)	967, 1365
HapII	CCGG	5 cut(s)	179, 575, 672, 995, 1105
HgaI	GACGC	2 cut(s)	127, 785
HhaI	GCGC	2 cut(s)	796, 1036
Hin1II	CATG	8 cut(s)	308, 326, 704, 817, 1129, 1230, 1251, 1309
Hin6I	GCGC	2 cut(s)	794, 1034
HinP1I	GCGC	2 cut(s)	794, 1034
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	6 cut(s)	35, 97, 332, 361, 923, 1217
HpaII	CCGG	5 cut(s)	179, 575, 672, 995, 1105
HphI	GGTGA	4 cut(s)	160, 290, 655, 1399
Hpy166II	GTNNAC	3 cut(s)	142, 677, 1444
Hpy188I	TCNGA	5 cut(s)	102, 166, 175, 1299, 1418
Hpy188III	TCNNGA	4 cut(s)	61, 878, 995, 1180
Hpy8I	GTNNAC	3 cut(s)	142, 677, 1444
HpyAV	CCTTC	6 cut(s)	115, 397, 556, 616, 680, 1413
HpyCH4III	ACNGT	2 cut(s)	148, 1273
HpyCH4IV	ACGT	3 cut(s)	432, 735, 1236
HpyCH4V	TGCA	8 cut(s)	4, 509, 777, 1112, 1125, 1289, 1325, 1434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	7 cut(s)	172, 212, 423, 516, 726, 890, 948
HpySE526I	ACGT	3 cut(s)	432, 735, 1236
Hsp92II	CATG	8 cut(s)	308, 326, 704, 817, 1129, 1230, 1251, 1309
HspAI	GCGC	2 cut(s)	794, 1034
Kpn2I	TCCGGA	1 cut(s)	994
Ksp22I	TGATCA	2 cut(s)	15, 1176
KspI	CCGCGG	1 cut(s)	1362
Kzo9I	GATC	4 cut(s)	15, 692, 756, 1176
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	3 cut(s)	327, 1342, 1418
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	3 cut(s)	399, 468, 800
MaeII	ACGT	3 cut(s)	432, 735, 1236
MaeIII	GTNAC	1 cut(s)	1267
MalI	GATC	4 cut(s)	17, 694, 758, 1178
MboI	GATC	4 cut(s)	15, 692, 756, 1176
MboII	GAAGA	5 cut(s)	228, 702, 893, 983, 1214
MfeI	CAATTG	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	5 cut(s)	11, 88, 711, 987, 1284
MlyI	GAGTC	2 cut(s)	341, 932
MroI	TCCGGA	1 cut(s)	994
MroXI	GAANNNNTTC	1 cut(s)	1458
MseI	TTAA	3 cut(s)	153, 1049, 1083
MspA1I	CMGCKG	1 cut(s)	1361
MspI	CCGG	5 cut(s)	179, 575, 672, 995, 1105
MspR9I	CCNGG	5 cut(s)	126, 180, 576, 1105, 1428
MunI	CAATTG	1 cut(s)	11
Mva1269I	GAATGC	4 cut(s)	451, 544, 719, 847
MvaI	CCWGG	2 cut(s)	126, 1428
MvnI	CGCG	4 cut(s)	656, 796, 1036, 1361
MwoI	GCNNNNNNNGC	1 cut(s)	539
NciI	CCSGG	3 cut(s)	180, 576, 1105
NcoI	CCATGG	1 cut(s)	304
NdeI	CATATG	2 cut(s)	366, 495
NdeII	GATC	4 cut(s)	15, 692, 756, 1176
NlaIII	CATG	8 cut(s)	308, 326, 704, 817, 1129, 1230, 1251, 1309
NlaIV	GGNNCC	1 cut(s)	1311
NspV	TTCGAA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	446
PctI	GAATGC	4 cut(s)	451, 544, 719, 847
PdmI	GAANNNNTTC	1 cut(s)	1458
PfeI	GAWTC	4 cut(s)	35, 97, 361, 1217
PkrI	GCNGC	6 cut(s)	252, 342, 658, 1357, 1360, 1433
PleI	GAGTC	2 cut(s)	340, 931
PpsI	GAGTC	2 cut(s)	340, 931
PshBI	ATTAAT	1 cut(s)	1083
Psp1406I	AACGTT	1 cut(s)	735
Psp6I	CCWGG	2 cut(s)	124, 1426
PspGI	CCWGG	2 cut(s)	124, 1426
PspN4I	GGNNCC	1 cut(s)	1311
PspPI	GGNCC	2 cut(s)	669, 1363
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
Rsr2I	CGGWCCG	1 cut(s)	669
RsrII	CGGWCCG	1 cut(s)	669
SacII	CCGCGG	1 cut(s)	1362
SaqAI	TTAA	3 cut(s)	153, 1049, 1083
SatI	GCNGC	6 cut(s)	251, 341, 657, 1356, 1359, 1432
Sau3AI	GATC	4 cut(s)	15, 692, 756, 1176
Sau96I	GGNCC	2 cut(s)	669, 1363
SchI	GAGTC	2 cut(s)	341, 932
ScrFI	CCNGG	5 cut(s)	126, 180, 576, 1105, 1428
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	2 cut(s)	238, 1330
Sfr303I	CCGCGG	1 cut(s)	1362
SfuI	TTCGAA	1 cut(s)	204
SgrBI	CCGCGG	1 cut(s)	1362
SinI	GGWCC	1 cut(s)	669
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	5 cut(s)	11, 88, 711, 987, 1284
SsiI	CCGC	6 cut(s)	251, 610, 636, 656, 1359, 1361
SspMI	CTAG	3 cut(s)	399, 468, 800
StyD4I	CCNGG	5 cut(s)	124, 178, 574, 1103, 1426
StyI	CCWWGG	2 cut(s)	304, 1221
TaaI	ACNGT	2 cut(s)	148, 1273
TaiI	ACGT	3 cut(s)	435, 738, 1239
TaqI	TCGA	5 cut(s)	33, 204, 285, 759, 962
TaqII	GACCGA	1 cut(s)	657
TasI	AATT	5 cut(s)	11, 88, 711, 987, 1284
TauI	GCSGC	3 cut(s)	253, 659, 1361
TfiI	GAWTC	4 cut(s)	35, 97, 361, 1217
Tru1I	TTAA	3 cut(s)	153, 1049, 1083
Tru9I	TTAA	3 cut(s)	153, 1049, 1083
TscAI	CASTG	1 cut(s)	730
TseI	GCWGC	3 cut(s)	340, 1355, 1431
TspDTI	ATGAA	9 cut(s)	353, 429, 635, 689, 1000, 1014, 1236, 1415, 1451
TspRI	CASTG	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	669
VspI	ATTAAT	1 cut(s)	1083
XapI	RAATTY	2 cut(s)	88, 987
XmiI	GTMKAC	2 cut(s)	676, 1443
XmnI	GAANNNNTTC	1 cut(s)	1458
XspI	CTAG	3 cut(s)	399, 468, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.