Rh2AG122400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013087
Physical Location & Seq
Forward (+)
11122398 .. 11123270
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG122400.1

Sequence Viewer

Length: 873 bp
ATGGTGCGGATGGGAATGAAGGCTGATAGTACTGCAATGGTGAATATGCTCGCGGCTTGTGGTCGGTCAGGTAGACTGAAAGAAGGAAGATCAGTTCATGGATATCTAATTAGGGCATTCACTGAGTTGAACGTAGTTGTTGAAACGGCTTTGATCGATATGTATTGTAAATGCAAAAGGGTGGAAGTGGCGCGTCTAGTGTTTGAGAGCATGGCATATAGGAACTTGGTTTGCTGGAATGCTATGATTTTGGGGCATTGTTTTGAGGGAAATCCTCAAGATGGACTTAGCCTGTTTAGTGAAATGTTAGGTAGAACGGAGTCAAACGATGGGGAAACCATCCCTGAAAATAGGTTGTCGAGGCCAACCAAAGGCAGAGAGGGAATTCTTCCGGATGAAACTACTTTCATAGGTGTTCTTTGTGCCTGTGCGCGTGCTGGATTGTTAAGAGAAGCCAGAGATTACTTCAGGCAAATGATTAATGTTTTCCATTTAAAGCCCCGGTTTGCACATTATTGGTGCATGGCTAATGTTTATGTTGGTGTGGGGCTAATACAAGAGGCAGAGGAAATGATCAGGAAAATGCCAGAGGTTGCTGAAGATTTGACAAAAGAATCCTTGGCATGGGCTAATGTGCTTGGTTCATGTCGTTTCCAAAAAGATGTTACTGTGGGAGAACAAATTGCAATATCTCTGATTGACATGGAACCTCAAAACATTGCATACTACAGATTGTTGCTGAATGTCTATGCTGCCGCGGGCCAATGGGAGGATGTTGCTTGGGTGAAAGAAATGATGAAAGAAAACAAGGTCAGAAGGCTACCTGGCTGCAATCTTGTAGACCTGAACGAAATAGTTCATCAGAGTTGGTAA

Protein Analysis

290

Amino Acids

32.93

Weight (kDa)

6.26

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 221 - 280 1.4e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51320
malus_domestica MD15G1241200.v1.1
prunus_persica Prupe.7G172800_v2.0.a1
pyrus_communis pycom02g09790 pycom15g21270
rosa_chinensis RchiOBHm_Chr2g0098771
rosa_laevigata RLG00000016826 RLG00000037003
rosa_multiflora Rmu_sc0002776.1_g000032 Rmu_sc0004816.1_g000008
rosa_roxburghii Rroxscaffold_2G00143720
rosa_rugosa Rorug02G0074800
rosa_samantha Rh2AG122400 Rh2BG126100 Rh2CG127000 Rh2DG128100 Rh7DG389800
rosa_wichuraiana Rw0G004250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 73, 840
AccII CGCG 4 cut(s) 53, 193, 433, 758
AccIII TCCGGA 1 cut(s) 391
AciI CCGC 4 cut(s) 7, 53, 756, 758
AcsI RAATTY 1 cut(s) 384
AcuI CTGAAG 2 cut(s) 451, 618
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 4 cut(s) 281, 371, 624, 769
AgsI TTSAA 2 cut(s) 130, 143
AjnI CCWGG 1 cut(s) 823
AloI GAACNNNNNNTCC 2 cut(s) 78, 110
Aor13HI TCCGGA 1 cut(s) 391
AoxI GGCC 2 cut(s) 362, 760
ApeKI GCWGC 2 cut(s) 752, 828
ApoI RAATTY 1 cut(s) 384
AseI ATTAAT 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 855
AspLEI GCGC 2 cut(s) 193, 433
AspS9I GGNCC 1 cut(s) 760
AsuC2I CCSGG 1 cut(s) 502
AsuHPI GGTGA 2 cut(s) 52, 796
BbvI GCAGC 2 cut(s) 739, 815
BccI CCATC 4 cut(s) 4, 275, 323, 347
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 825
BclI TGATCA 1 cut(s) 573
BcnI CCSGG 1 cut(s) 502
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 727
BisI GCNGC 4 cut(s) 54, 753, 756, 829
BlsI GCNGC 4 cut(s) 55, 754, 757, 830
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 502, 825
BmgT120I GGNCC 1 cut(s) 760
BmiI GGNNCC 1 cut(s) 708
BmrFI CCNGG 2 cut(s) 502, 825
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 502
Bsa29I ATCGAT 1 cut(s) 156
BsaJI CCNNGG 3 cut(s) 500, 618, 756
BsaWI WCCGGW 1 cut(s) 391
Bsc4I CCNNNNNNNGG 4 cut(s) 281, 371, 624, 769
Bse3DI GCAATG 2 cut(s) 42, 717
BseAI TCCGGA 1 cut(s) 391
BseBI CCWGG 1 cut(s) 825
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 3 cut(s) 500, 618, 756
BseGI GGATG 4 cut(s) 15, 339, 400, 778
BseLI CCNNNNNNNGG 4 cut(s) 281, 371, 624, 769
BseMI GCAATG 2 cut(s) 42, 717
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 739, 815
Bsh1236I CGCG 4 cut(s) 53, 193, 433, 758
BshFI GGCC 2 cut(s) 364, 762
BshVI ATCGAT 1 cut(s) 156
BsiSI CCGG 2 cut(s) 392, 502
BslI CCNNNNNNNGG 4 cut(s) 281, 371, 624, 769
BsmI GAATGC 2 cut(s) 116, 244
BsnI GGCC 2 cut(s) 364, 762
Bsp13I TCCGGA 1 cut(s) 391
Bsp143I GATC 3 cut(s) 89, 153, 573
BspACI CCGC 4 cut(s) 7, 53, 756, 758
BspANI GGCC 2 cut(s) 364, 762
BspCNI CTCAG 1 cut(s) 115
BspDI ATCGAT 1 cut(s) 156
BspEI TCCGGA 1 cut(s) 391
BspFNI CGCG 4 cut(s) 53, 193, 433, 758
BspLI GGNNCC 1 cut(s) 708
BsrDI GCAATG 2 cut(s) 42, 717
BssECI CCNNGG 3 cut(s) 500, 618, 756
BssMI GATC 3 cut(s) 89, 153, 573
BssT1I CCWWGG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 825
Bst4CI ACNGT 1 cut(s) 670
BstC8I GCNNGC 3 cut(s) 51, 435, 760
BstDEI CTNAG 2 cut(s) 123, 287
BstDSI CCRYGG 1 cut(s) 756
BstF5I GGATG 4 cut(s) 15, 339, 400, 778
BstFNI CGCG 4 cut(s) 53, 193, 433, 758
BstHHI GCGC 2 cut(s) 193, 433
BstKTI GATC 3 cut(s) 92, 156, 576
BstMBI GATC 3 cut(s) 89, 153, 573
BstNI CCWGG 1 cut(s) 825
BstSCI CCNGG 2 cut(s) 500, 823
BstSFI CTRYAG 1 cut(s) 727
BstUI CGCG 4 cut(s) 53, 193, 433, 758
BstV1I GCAGC 2 cut(s) 739, 815
Bsu15I ATCGAT 1 cut(s) 156
BsuRI GGCC 2 cut(s) 364, 762
BsuTUI ATCGAT 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 756
BtsCI GGATG 4 cut(s) 15, 339, 400, 778
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 3 cut(s) 51, 435, 760
CfoI GCGC 2 cut(s) 193, 433
Cfr13I GGNCC 1 cut(s) 760
Cfr42I CCGCGG 1 cut(s) 759
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 30
CviAII CATG 6 cut(s) 98, 211, 523, 624, 645, 703
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 2 cut(s) 123, 287
DpnI GATC 3 cut(s) 91, 155, 575
DpnII GATC 3 cut(s) 89, 153, 573
DraI TTTAAA 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 618
Eco32I GATATC 1 cut(s) 104
Eco57I CTGAAG 2 cut(s) 451, 618
EcoRI GAATTC 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 823
EcoRV GATATC 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 6 cut(s) 101, 214, 526, 627, 648, 706
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 6 cut(s) 97, 210, 522, 623, 644, 702
FauI CCCGC 1 cut(s) 751
FbaI TGATCA 1 cut(s) 573
FblI GTMKAC 2 cut(s) 73, 840
Fnu4HI GCNGC 4 cut(s) 54, 753, 756, 829
FokI GGATG 4 cut(s) 22, 326, 407, 785
Fsp4HI GCNGC 4 cut(s) 54, 753, 756, 829
FspBI CTAG 1 cut(s) 197
GlaI GCGC 2 cut(s) 192, 432
GluI GCNGC 4 cut(s) 54, 753, 756, 829
HaeIII GGCC 2 cut(s) 364, 762
HapII CCGG 2 cut(s) 392, 502
HgaI GACGC 1 cut(s) 182
HhaI GCGC 2 cut(s) 193, 433
Hin1II CATG 6 cut(s) 101, 214, 526, 627, 648, 706
Hin6I GCGC 2 cut(s) 191, 431
HinP1I GCGC 2 cut(s) 191, 431
HinfI GANTC 2 cut(s) 320, 614
HpaII CCGG 2 cut(s) 392, 502
HphI GGTGA 2 cut(s) 52, 796
Hpy166II GTNNAC 2 cut(s) 74, 841
Hpy188I TCNGA 3 cut(s) 696, 815, 864
Hpy188III TCNNGA 3 cut(s) 278, 392, 577
Hpy8I GTNNAC 2 cut(s) 74, 841
HpyAV CCTTC 3 cut(s) 13, 77, 810
HpyCH4III ACNGT 1 cut(s) 670
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 7 cut(s) 35, 174, 509, 522, 686, 722, 831
HpyF3I CTNAG 2 cut(s) 123, 287
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 6 cut(s) 101, 214, 526, 627, 648, 706
HspAI GCGC 2 cut(s) 191, 431
Kpn2I TCCGGA 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 573
KspI CCGCGG 1 cut(s) 759
Kzo9I GATC 3 cut(s) 89, 153, 573
Lsp1109I GCAGC 2 cut(s) 739, 815
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 664
MalI GATC 3 cut(s) 91, 155, 575
MboI GATC 3 cut(s) 89, 153, 573
MboII GAAGA 3 cut(s) 99, 380, 611
MluCI AATT 3 cut(s) 108, 384, 681
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 9 cut(s) 259, 285, 354, 373, 553, 559, 583, 720, 763
MroI TCCGGA 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 3 cut(s) 446, 480, 494
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 2 cut(s) 392, 502
MspR9I CCNGG 2 cut(s) 502, 825
Mva1269I GAATGC 2 cut(s) 116, 244
MvaI CCWGG 1 cut(s) 825
MvnI CGCG 4 cut(s) 53, 193, 433, 758
NciI CCSGG 1 cut(s) 502
NdeII GATC 3 cut(s) 89, 153, 573
NlaIII CATG 6 cut(s) 101, 214, 526, 627, 648, 706
NlaIV GGNNCC 1 cut(s) 708
PctI GAATGC 2 cut(s) 116, 244
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 1 cut(s) 614
PkrI GCNGC 4 cut(s) 55, 754, 757, 830
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 823
PspGI CCWGG 1 cut(s) 823
PspN4I GGNNCC 1 cut(s) 708
PspPI GGNCC 1 cut(s) 760
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SacII CCGCGG 1 cut(s) 759
SaqAI TTAA 3 cut(s) 446, 480, 494
SatI GCNGC 4 cut(s) 54, 753, 756, 829
Sau3AI GATC 3 cut(s) 89, 153, 573
Sau96I GGNCC 1 cut(s) 760
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 502, 825
SfcI CTRYAG 1 cut(s) 727
Sfr303I CCGCGG 1 cut(s) 759
SgrBI CCGCGG 1 cut(s) 759
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
Sse9I AATT 3 cut(s) 108, 384, 681
SsiI CCGC 4 cut(s) 7, 53, 756, 758
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 500, 823
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 1 cut(s) 670
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 156, 359
TaqII GACCGA 1 cut(s) 54
TasI AATT 3 cut(s) 108, 384, 681
TatI WGTACW 1 cut(s) 29
TauI GCSGC 2 cut(s) 56, 758
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 3 cut(s) 446, 480, 494
Tru9I TTAA 3 cut(s) 446, 480, 494
TscAI CASTG 1 cut(s) 127
TseI GCWGC 2 cut(s) 752, 828
TspDTI ATGAA 7 cut(s) 32, 86, 397, 411, 633, 812, 848
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 1 cut(s) 127
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 1 cut(s) 384
XmiI GTMKAC 2 cut(s) 73, 840
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.