Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004816.1

Orthogroup ID

OG0013087

Physical Location & Seq

Genomic Coordinates Forward (+)

49607 .. 50116

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004816.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgattttggggcattgttttgagggaaatcctgaagatggacttagcctgtttagtgaaatgttaggtagaacagagtcaaacgatggggaaaccatccctgagaataggttgtcgaggccaaccaaaggcagaggtggaattcttccggatgaaactactttcataggtgttctttgtgcctgtgcgcgtgctagattgttaagagaaaccagagattacttcaggcaaatgattaatgttttccatttaaagccccggtttgcacattattggtgcatggctaatgtttatgttggtgtggggctaatacaagaggcagaggaaatgatcaggaaaatgccagaggttgctgaagatttgacaaaagaatccttggcatgggctaatgtgcttggttcatgtcgtttccaaaaagatgttactgtgggagaacaaattgcaatatctcttattgacatggaacctcaaaacattgcatactatagattgttgctgaatgtcttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

169

Amino Acids

19.19

Weight (kDa)

5.27

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51320
malus_domestica	MD15G1241200.v1.1
prunus_persica	Prupe.7G172800_v2.0.a1
pyrus_communis	pycom02g09790 pycom15g21270
rosa_chinensis	RchiOBHm_Chr2g0098771
rosa_laevigata	RLG00000016826 RLG00000037003
rosa_multiflora	Rmu_sc0002776.1_g000032 Rmu_sc0004816.1_g000008
rosa_roxburghii	Rroxscaffold_2G00143720
rosa_rugosa	Rorug02G0074800
rosa_samantha	Rh2AG122400 Rh2BG126100 Rh2CG127000 Rh2DG128100 Rh7DG389800
rosa_wichuraiana	Rw0G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	3 cut(s)	54, 208, 375
AfiI	CCNNNNNNNGG	3 cut(s)	38, 128, 381
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	141
AseI	ATTAAT	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	259
BccI	CCATC	3 cut(s)	32, 80, 104
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	259
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	257, 375
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 128, 381
Bse3DI	GCAATG	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	257, 375
BseGI	GGATG	2 cut(s)	96, 157
BseLI	CCNNNNNNNGG	3 cut(s)	38, 128, 381
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	149, 259
BslI	CCNNNNNNNGG	3 cut(s)	38, 128, 381
BsnI	GGCC	1 cut(s)	121
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	330
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	94
BspEI	TCCGGA	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	257, 375
BssMI	GATC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	44, 102
BstF5I	GGATG	2 cut(s)	96, 157
BstFNI	CGCG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	484
BstUI	CGCG	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	96, 157
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	190
CviAII	CATG	4 cut(s)	280, 381, 402, 460
CviJI	RGCY	6 cut(s)	48, 121, 256, 284, 307, 386
CviKI_1	RGCY	6 cut(s)	48, 121, 256, 284, 307, 386
DdeI	CTNAG	2 cut(s)	44, 102
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
DraI	TTTAAA	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	375
Eco57I	CTGAAG	3 cut(s)	54, 208, 375
EcoRI	GAATTC	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	4 cut(s)	283, 384, 405, 463
FaiI	YATR	8 cut(s)	167, 281, 294, 382, 403, 461, 481, 486
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FatI	CATG	4 cut(s)	279, 380, 401, 459
FbaI	TGATCA	1 cut(s)	330
FokI	GGATG	2 cut(s)	83, 164
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	2 cut(s)	149, 259
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	4 cut(s)	283, 384, 405, 463
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	2 cut(s)	77, 371
HpaII	CCGG	2 cut(s)	149, 259
Hpy188III	TCNNGA	3 cut(s)	32, 149, 334
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	4 cut(s)	266, 279, 443, 479
HpyF3I	CTNAG	2 cut(s)	44, 102
Hsp92II	CATG	4 cut(s)	283, 384, 405, 463
HspAI	GCGC	1 cut(s)	188
Kpn2I	TCCGGA	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	3 cut(s)	47, 137, 368
MluCI	AATT	2 cut(s)	141, 438
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	7 cut(s)	16, 111, 128, 310, 316, 340, 477
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	3 cut(s)	203, 237, 251
MspI	CCGG	2 cut(s)	149, 259
MspR9I	CCNGG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	190
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	4 cut(s)	283, 384, 405, 463
NlaIV	GGNNCC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	371
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	465
SaqAI	TTAA	3 cut(s)	203, 237, 251
Sau3AI	GATC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	259
SetI	ASST	6 cut(s)	70, 113, 139, 172, 351, 469
SfcI	CTRYAG	1 cut(s)	484
Sse9I	AATT	2 cut(s)	141, 438
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	1 cut(s)	116
TasI	AATT	2 cut(s)	141, 438
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	3 cut(s)	203, 237, 251
Tru9I	TTAA	3 cut(s)	203, 237, 251
TspDTI	ATGAA	3 cut(s)	154, 168, 390
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	1 cut(s)	141
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.