Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013087

Physical Location & Seq

Genomic Coordinates Forward (+)

11325648 .. 11326520

Gene Structure 873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG127000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGCGGATGGGAATGAAGGCTGATAGCACTGCAATGGTGAATATGCTCGCAGCTTGTGGTCGGTCAGGTAGACTGAAAGAAGGAAGATCAGTTCATGGATATCTAATTAGGGCATTCACTGAGTTGAACGTAGTTGTTGAAACGGCTTTGATCGATATGTATTGTAAATGCAAACGGGTGGAAGTGGCGCGTGTAGTGTTTGAGAGCATGGCATATAGGAACTTGGTTTGCTGGAATGCTATGATTTTGGGGCATTGTTTTGAGGGAAATCCTGAAGATGGACTTAGCCTGTTTAGTGAAATGTTAGGTAGAACAGAGTCAAAAGATGGGGAAACCATCCCTGAGAATAGGTTGTCGAGGCCAACCGAAGGCAGAAGGGGAATTCTTCCGGATGAAACTACTTTCATAGGTGTTCTTTGTGCCTGTGCGCGTGCTGGATTGTTAAGAGAAGCCAGAGATTTCTTCAGGCAAATGATTAATGTTTTCCATTTAAAGCCCCGGTTTGCACATTATTGGTGCATGGCTAATGTTTATGTTGGTGTGGGGCTAATACAAGAGGCAGAGGAAATGATCAGGAAAATGCCAGAGGTTGCTGAAGATTTGACAAAAGAATCCTTGGCATGGGCTAATGTGCTTGGTTCATGTCGTTTCCAAAAAGATGTTACTGTGGGAGAACAAATTGCAATATCTCTGATTGACATGGAACCTCAAAACATTGCATACTACAGATTGTTGCTGAATGTCTATGCTGCCGCGGGCCAATGGGACGATGTTGCTTGGGTGAAAGAAATGATGAAAGAAAACAAGGTCAGAAGGCTACCTGGCTGCAATCTTGTAGACCTGAACGAAATAGTTCATAAGAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

290

Amino Acids

32.93

Weight (kDa)

6.55

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	77 - 104	2.7e-06	PPR repeat
E_motif	PF20431	221 - 280	1.8e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51320
malus_domestica	MD15G1241200.v1.1
prunus_persica	Prupe.7G172800_v2.0.a1
pyrus_communis	pycom02g09790 pycom15g21270
rosa_chinensis	RchiOBHm_Chr2g0098771
rosa_laevigata	RLG00000016826 RLG00000037003
rosa_multiflora	Rmu_sc0002776.1_g000032 Rmu_sc0004816.1_g000008
rosa_roxburghii	Rroxscaffold_2G00143720
rosa_rugosa	Rorug02G0074800
rosa_samantha	Rh2AG122400 Rh2BG126100 Rh2CG127000 Rh2DG128100 Rh7DG389800
rosa_wichuraiana	Rw0G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	73, 840
AccII	CGCG	3 cut(s)	193, 433, 758
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	3 cut(s)	7, 756, 758
AcsI	RAATTY	1 cut(s)	384
AcuI	CTGAAG	3 cut(s)	297, 451, 618
AfiI	CCNNNNNNNGG	3 cut(s)	281, 371, 624
AgsI	TTSAA	2 cut(s)	130, 143
AjnI	CCWGG	1 cut(s)	823
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	2 cut(s)	362, 760
ApeKI	GCWGC	3 cut(s)	53, 752, 828
ApoI	RAATTY	1 cut(s)	384
AseI	ATTAAT	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	2 cut(s)	193, 433
AspS9I	GGNCC	1 cut(s)	760
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	52, 796
BbvI	GCAGC	3 cut(s)	65, 739, 815
BccI	CCATC	4 cut(s)	4, 275, 323, 347
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	825
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	502
BfmI	CTRYAG	1 cut(s)	727
BisI	GCNGC	4 cut(s)	54, 753, 756, 829
BlsI	GCNGC	4 cut(s)	55, 754, 757, 830
Bme1390I	CCNGG	2 cut(s)	502, 825
BmgT120I	GGNCC	1 cut(s)	760
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	502, 825
BpuMI	CCSGG	1 cut(s)	502
Bsa29I	ATCGAT	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	500, 618, 756
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 371, 624
Bse3DI	GCAATG	2 cut(s)	42, 717
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	825
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	500, 618, 756
BseGI	GGATG	3 cut(s)	15, 339, 400
BseLI	CCNNNNNNNGG	3 cut(s)	281, 371, 624
BseMI	GCAATG	2 cut(s)	42, 717
BseMII	CTCAG	2 cut(s)	114, 336
BseXI	GCAGC	3 cut(s)	65, 739, 815
Bsh1236I	CGCG	3 cut(s)	193, 433, 758
BshFI	GGCC	2 cut(s)	364, 762
BshVI	ATCGAT	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	392, 502
BslFI	GGGAC	1 cut(s)	782
BslI	CCNNNNNNNGG	3 cut(s)	281, 371, 624
BsmFI	GGGAC	1 cut(s)	782
BsmI	GAATGC	2 cut(s)	116, 244
BsnI	GGCC	2 cut(s)	364, 762
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	89, 153, 573
BspACI	CCGC	3 cut(s)	7, 756, 758
BspANI	GGCC	2 cut(s)	364, 762
BspCNI	CTCAG	2 cut(s)	115, 337
BspDI	ATCGAT	1 cut(s)	156
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	3 cut(s)	193, 433, 758
BspLI	GGNNCC	1 cut(s)	708
BsrDI	GCAATG	2 cut(s)	42, 717
BssECI	CCNNGG	3 cut(s)	500, 618, 756
BssMI	GATC	3 cut(s)	89, 153, 573
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	1 cut(s)	670
BstC8I	GCNNGC	3 cut(s)	51, 435, 760
BstDEI	CTNAG	3 cut(s)	123, 287, 345
BstDSI	CCRYGG	1 cut(s)	756
BstF5I	GGATG	3 cut(s)	15, 339, 400
BstFNI	CGCG	3 cut(s)	193, 433, 758
BstHHI	GCGC	2 cut(s)	193, 433
BstKTI	GATC	3 cut(s)	92, 156, 576
BstMBI	GATC	3 cut(s)	89, 153, 573
BstNI	CCWGG	1 cut(s)	825
BstSCI	CCNGG	2 cut(s)	500, 823
BstSFI	CTRYAG	1 cut(s)	727
BstUI	CGCG	3 cut(s)	193, 433, 758
BstV1I	GCAGC	3 cut(s)	65, 739, 815
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	364, 762
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	756
BtsCI	GGATG	3 cut(s)	15, 339, 400
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 120
Cac8I	GCNNGC	3 cut(s)	51, 435, 760
CfoI	GCGC	2 cut(s)	193, 433
Cfr13I	GGNCC	1 cut(s)	760
Cfr42I	CCGCGG	1 cut(s)	759
ClaI	ATCGAT	1 cut(s)	156
CviAII	CATG	6 cut(s)	98, 211, 523, 624, 645, 703
DdeI	CTNAG	3 cut(s)	123, 287, 345
DpnI	GATC	3 cut(s)	91, 155, 575
DpnII	GATC	3 cut(s)	89, 153, 573
DraI	TTTAAA	1 cut(s)	495
Eco130I	CCWWGG	1 cut(s)	618
Eco32I	GATATC	1 cut(s)	104
Eco57I	CTGAAG	3 cut(s)	297, 451, 618
EcoRI	GAATTC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	823
EcoRV	GATATC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	618
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	6 cut(s)	101, 214, 526, 627, 648, 706
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	1 cut(s)	782
FatI	CATG	6 cut(s)	97, 210, 522, 623, 644, 702
FauI	CCCGC	1 cut(s)	751
FbaI	TGATCA	1 cut(s)	573
FblI	GTMKAC	2 cut(s)	73, 840
Fnu4HI	GCNGC	4 cut(s)	54, 753, 756, 829
FokI	GGATG	3 cut(s)	22, 326, 407
Fsp4HI	GCNGC	4 cut(s)	54, 753, 756, 829
GlaI	GCGC	2 cut(s)	192, 432
GluI	GCNGC	4 cut(s)	54, 753, 756, 829
HaeIII	GGCC	2 cut(s)	364, 762
HapII	CCGG	2 cut(s)	392, 502
HhaI	GCGC	2 cut(s)	193, 433
Hin1II	CATG	6 cut(s)	101, 214, 526, 627, 648, 706
Hin6I	GCGC	2 cut(s)	191, 431
HinP1I	GCGC	2 cut(s)	191, 431
HinfI	GANTC	2 cut(s)	320, 614
HpaII	CCGG	2 cut(s)	392, 502
HphI	GGTGA	2 cut(s)	52, 796
Hpy166II	GTNNAC	2 cut(s)	74, 841
Hpy188I	TCNGA	2 cut(s)	696, 815
Hpy188III	TCNNGA	3 cut(s)	275, 392, 577
Hpy8I	GTNNAC	2 cut(s)	74, 841
HpyAV	CCTTC	5 cut(s)	13, 77, 365, 372, 810
HpyCH4III	ACNGT	1 cut(s)	670
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	7 cut(s)	35, 174, 509, 522, 686, 722, 831
HpyF3I	CTNAG	3 cut(s)	123, 287, 345
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	6 cut(s)	101, 214, 526, 627, 648, 706
HspAI	GCGC	2 cut(s)	191, 431
Kpn2I	TCCGGA	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	573
KspI	CCGCGG	1 cut(s)	759
Kzo9I	GATC	3 cut(s)	89, 153, 573
Lsp1109I	GCAGC	3 cut(s)	65, 739, 815
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	3 cut(s)	91, 155, 575
MboI	GATC	3 cut(s)	89, 153, 573
MboII	GAAGA	5 cut(s)	99, 290, 380, 457, 611
MluCI	AATT	3 cut(s)	108, 384, 681
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	6 cut(s)	259, 354, 553, 559, 583, 720
MroI	TCCGGA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	855
MseI	TTAA	3 cut(s)	446, 480, 494
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	2 cut(s)	392, 502
MspR9I	CCNGG	2 cut(s)	502, 825
Mva1269I	GAATGC	2 cut(s)	116, 244
MvaI	CCWGG	1 cut(s)	825
MvnI	CGCG	3 cut(s)	193, 433, 758
NciI	CCSGG	1 cut(s)	502
NdeII	GATC	3 cut(s)	89, 153, 573
NlaIII	CATG	6 cut(s)	101, 214, 526, 627, 648, 706
NlaIV	GGNNCC	1 cut(s)	708
PctI	GAATGC	2 cut(s)	116, 244
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	1 cut(s)	614
PkrI	GCNGC	4 cut(s)	55, 754, 757, 830
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PshBI	ATTAAT	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	1 cut(s)	708
PspPI	GGNCC	1 cut(s)	760
RseI	CAYNNNNRTG	1 cut(s)	35
SacII	CCGCGG	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	446, 480, 494
SatI	GCNGC	4 cut(s)	54, 753, 756, 829
Sau3AI	GATC	3 cut(s)	89, 153, 573
Sau96I	GGNCC	1 cut(s)	760
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	502, 825
SfcI	CTRYAG	1 cut(s)	727
Sfr303I	CCGCGG	1 cut(s)	759
SgrBI	CCGCGG	1 cut(s)	759
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	108, 384, 681
SsiI	CCGC	3 cut(s)	7, 756, 758
StyD4I	CCNGG	2 cut(s)	500, 823
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	670
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	156, 359
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	108, 384, 681
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	3 cut(s)	446, 480, 494
Tru9I	TTAA	3 cut(s)	446, 480, 494
TscAI	CASTG	2 cut(s)	37, 127
TseI	GCWGC	3 cut(s)	53, 752, 828
TspDTI	ATGAA	7 cut(s)	32, 86, 397, 411, 633, 812, 848
TspRI	CASTG	2 cut(s)	37, 127
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	1 cut(s)	384
XmiI	GTMKAC	2 cut(s)	73, 840
XmnI	GAANNNNTTC	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.