Prupe.7G172800_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
17361562 .. 17363268
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G172800.1

Sequence Viewer

Length: 1707 bp
ATGGCAAGGATTTCAAGACGAGAATTTCGTCCCTTCAGGAGCTCCATTTTCGGACATCTCACTTCTAACCCATCAAAACCCAATCTTTCTGTATCATCCTCCCCATTTTGCTCTTCTTCTTCTTCGTTCCAACCATCTCTTAACCGCCATATTTTTTCGCTTCTCGATGCGTGTAAGAATTTGATCCAGATCACCCAAATCCATGCCCATTTGATCACGCGGGGTCTTTTCGATTCGTTTTGGGCCAGAAAGTTGCTTAAGAGCTATTCTGATTTCAGAGATTTCGATTATGTAATATTGATCTTCAGGTGCATTGATTTGCCTGGTACTTTTTGCGTCAATACGGTAATTAAAGCTTACTCAGTTAGTTCAATGCCCGACCAAGCTTTGGTGGTCTATTTCGAATGGCTGAGAAATGGGTTTGCTCCCACTAGCTATACTTTTGTGCCCCTTATTGGGTCTTGTGCTAAAATGGGTTCTGTTGAATCTGGGAGAAAATGCCATGGGCAGGTGGTTAAGCATGGGCTTGACTCTCTGCTGCAAGTGCAGAACTCTTTGATTCACATGTATTGTAGTAGTGAGAAAGTTGAGCTTGCTAGAATGATGTTCGATGAAATGTCCGAAAGGGACCTGGTATCCTGGAATACAATTCTCGACGGCTATGCTAGATTCGGTGATTTGGACGTTGCTCATAATTTGTTTGATGAAATGCCGGAGAGAAATGTGGTCTCTTGGAATGTTATGCTTGGTGGGTATTGGAAGGGTGGGAAGCCGGGGTGTGCATTGAAGCTGTTTAGGAAAATGATGGGCATGGAATTGAAGGGGAACAGCACTACCATAGCGAATATGCTAGCGGCTTGTGGTCGGTCGGCTAGACTGAATGAAGGAAGATCAGTTCATGGATATTTAATTAGGAAATTATTTGAGTTTAACATAGTTATCAGCACAGCTTTGATTGATATGTATTGTAAATGCAAAAGGGTGGAAGTGGCGTGCAGAGTATTTGAGAGCATGGCGAATAGGAACCTGGTTTGCTGGAATGCAATTATTTTGGGGCATTGCATCCATGGAAATGCTAAGGATGGACTTAACCTATATAGAGAAATGGTGGGGAGAATGAAATCAAAAGATGGTGAAACCATCCCTGCGAAGGGGAGTTCGAGGCCAGATGATGATGGAGGAGGAATTATCCCAGATGAAATTACATTCATAGGTGTTCTTTGTGCGTGTGCCCGTGCTGGACTTGTAAGAGAAGCTGCAGATTACTTCAGCCAAATGATTAATGTATTCTGCGTAAAGCCCAAGTTTGCACACTATTGGTGCATGGCTAATGCTTTTGCTGGTGCGGGGCTTATCCAGGAGGCAGAGGAAATAATTAAGAACATGCCAGAAATTGCTGAGGACTTGTCATCGGAATCCTTGGCATGGGCTAATTTGCTTGGTTCATGTCGTTTTCAAGGGGGTATCACAATGGGAGAAAAAATTGCAAGGTCCCTCATTGACAAGGAACCTGAAAACATTGCTTACTATCGCTTGCTGCTGAATGTCTATGCTGTGGCATGTCGATGGGAGGATGTTGCTCGGGTGAAAGAGATGATGAAAGAAAAAAAGGTTGGAAGAATGCCTGGATGCAATCTTGTGGAGTTGAATGAAATTGTCCATAATTTCAGGGTTGGTCGACATTGGCAAGAGAATTGTGCATTATGA

Protein Analysis

569

Amino Acids

63.9

Weight (kDa)

8.6

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013087)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 499
Acc36I ACCTGC 1 cut(s) 499
AccB7I CCANNNNNTGG 1 cut(s) 388
AccI GTMKAC 1 cut(s) 1678
AccII CGCG 1 cut(s) 220
AciI CCGC 4 cut(s) 145, 220, 854, 1346
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 2 cut(s) 23, 178
AcuI CTGAAG 3 cut(s) 19, 289, 1252
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 7 cut(s) 388, 455, 456, 508, 1150, 1151, 1425
AflII CTTAAG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 7 cut(s) 15, 372, 485, 787, 820, 1457, 1648
AjnI CCWGG 6 cut(s) 322, 630, 638, 1026, 1356, 1624
AjuI GAANNNNNNNTTGG 2 cut(s) 1596, 1628
AloI GAACNNNNNNTCC 2 cut(s) 879, 911
AluBI AGCT 9 cut(s) 42, 264, 356, 386, 435, 592, 790, 950, 1256
AluI AGCT 9 cut(s) 42, 264, 356, 386, 435, 592, 790, 950, 1256
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 733
AlwI GGATC 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 1581
AoxI GGCC 2 cut(s) 243, 1163
ApeKI GCWGC 3 cut(s) 538, 1256, 1537
ApoI RAATTY 2 cut(s) 23, 178
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
AseI ATTAAT 1 cut(s) 1281
AspS9I GGNCC 3 cut(s) 243, 628, 1491
AsuC2I CCSGG 1 cut(s) 774
AsuHPI GGTGA 4 cut(s) 184, 686, 1145, 1597
AsuII TTCGAA 1 cut(s) 402
AsuNHI GCTAGC 1 cut(s) 850
AvaI CYCGRG 1 cut(s) 1581
AvaII GGWCC 2 cut(s) 628, 1491
BaeGI GKGCMC 2 cut(s) 450, 1234
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 44
BbvCI CCTCAGC 1 cut(s) 1398
BbvI GCAGC 3 cut(s) 525, 1243, 1524
BccI CCATC 8 cut(s) 79, 142, 799, 1076, 1124, 1148, 1169, 1560
BceAI ACGGC 1 cut(s) 673
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 6 cut(s) 324, 632, 640, 1028, 1358, 1626
BciVI GTATCC 1 cut(s) 646
BclI TGATCA 1 cut(s) 213
BcnI CCSGG 1 cut(s) 774
BcoDI GTCTC 1 cut(s) 733
BfaI CTAG 5 cut(s) 432, 597, 666, 851, 873
BfmI CTRYAG 1 cut(s) 1257
BfrI CTTAAG 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 499
BfuI GTATCC 1 cut(s) 646
BisI GCNGC 4 cut(s) 539, 855, 1257, 1538
BlsI GCNGC 4 cut(s) 540, 856, 1258, 1539
Bme1390I CCNGG 7 cut(s) 324, 632, 640, 774, 1028, 1358, 1626
Bme18I GGWCC 2 cut(s) 628, 1491
BmeT110I CYCGRG 1 cut(s) 1581
BmgT120I GGNCC 3 cut(s) 243, 628, 1491
BmiI GGNNCC 4 cut(s) 629, 1025, 1493, 1509
BmrFI CCNGG 7 cut(s) 324, 632, 640, 774, 1028, 1358, 1626
BmsI GCATC 3 cut(s) 157, 1071, 1619
BmtI GCTAGC 1 cut(s) 854
Bpu10I CCTNAGC 2 cut(s) 1077, 1398
Bpu14I TTCGAA 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 774
BsaBI GATNNNNATC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 733
BsaJI CCNNGG 4 cut(s) 502, 773, 1066, 1419
Bsc4I CCNNNNNNNGG 7 cut(s) 388, 455, 456, 508, 1150, 1151, 1425
Bse3DI GCAATG 2 cut(s) 1057, 1518
Bse8I GATNNNNATC 1 cut(s) 188
BseBI CCWGG 6 cut(s) 324, 632, 640, 1028, 1358, 1626
BseDI CCNNGG 4 cut(s) 502, 773, 1066, 1419
BseGI GGATG 6 cut(s) 95, 1062, 1087, 1140, 1579, 1634
BseJI GATNNNNATC 1 cut(s) 188
BseLI CCNNNNNNNGG 7 cut(s) 388, 455, 456, 508, 1150, 1151, 1425
BseMI GCAATG 2 cut(s) 1057, 1518
BseMII CTCAG 3 cut(s) 375, 401, 1389
BseRI GAGGAG 1 cut(s) 1194
BseSI GKGCMC 2 cut(s) 450, 1234
BseXI GCAGC 3 cut(s) 525, 1243, 1524
BsgI GTGCAG 2 cut(s) 566, 1015
Bsh1236I CGCG 1 cut(s) 220
Bsh1285I CGRYCG 1 cut(s) 869
BshFI GGCC 2 cut(s) 245, 1165
BsiEI CGRYCG 1 cut(s) 869
BsiHKAI GWGCWC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 1581
BsiSI CCGG 2 cut(s) 713, 773
BslFI GGGAC 3 cut(s) 15, 641, 1477
BslI CCNNNNNNNGG 7 cut(s) 388, 455, 456, 508, 1150, 1151, 1425
BsmAI GTCTC 1 cut(s) 733
BsmFI GGGAC 3 cut(s) 15, 641, 1477
BsmI GAATGC 2 cut(s) 1045, 1626
BsnI GGCC 2 cut(s) 245, 1165
Bso31I GGTCTC 1 cut(s) 733
BsoBI CYCGRG 1 cut(s) 1581
Bsp119I TTCGAA 1 cut(s) 402
Bsp1286I GDGCHC 3 cut(s) 44, 450, 1234
Bsp143I GATC 5 cut(s) 183, 189, 213, 300, 890
Bsp19I CCATGG 2 cut(s) 502, 1066
BspACI CCGC 4 cut(s) 145, 220, 854, 1346
BspANI GGCC 2 cut(s) 245, 1165
BspCNI CTCAG 3 cut(s) 374, 402, 1390
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 4 cut(s) 629, 1025, 1493, 1509
BspMAI CTGCAG 1 cut(s) 1261
BspMI ACCTGC 1 cut(s) 499
BspOI GCTAGC 1 cut(s) 854
BspPI GGATC 1 cut(s) 178
BspQI GCTCTTC 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 402
BspTI CTTAAG 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 733
BsrDI GCAATG 2 cut(s) 1057, 1518
BssECI CCNNGG 4 cut(s) 502, 773, 1066, 1419
BssMI GATC 5 cut(s) 183, 189, 213, 300, 890
BssT1I CCWWGG 3 cut(s) 502, 1066, 1419
Bst2UI CCWGG 6 cut(s) 324, 632, 640, 1028, 1358, 1626
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 118
BstAFI CTTAAG 1 cut(s) 257
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 4 cut(s) 594, 852, 994, 1535
BstDEI CTNAG 4 cut(s) 361, 410, 1077, 1398
BstDSI CCRYGG 2 cut(s) 502, 1066
BstF5I GGATG 6 cut(s) 95, 1062, 1087, 1140, 1579, 1634
BstFNI CGCG 1 cut(s) 220
BstKTI GATC 5 cut(s) 186, 192, 216, 303, 893
BstMAI GTCTC 1 cut(s) 733
BstMBI GATC 5 cut(s) 183, 189, 213, 300, 890
BstMCI CGRYCG 1 cut(s) 869
BstMWI GCNNNNNNNGC 1 cut(s) 544
BstNI CCWGG 6 cut(s) 324, 632, 640, 1028, 1358, 1626
BstNSI RCATGY 3 cut(s) 568, 1387, 1563
BstSCI CCNGG 7 cut(s) 322, 630, 638, 772, 1026, 1356, 1624
BstSFI CTRYAG 1 cut(s) 1257
BstSLI GKGCMC 2 cut(s) 450, 1234
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 3 cut(s) 525, 1243, 1524
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 2 cut(s) 245, 1165
BtgI CCRYGG 2 cut(s) 502, 1066
BtsCI GGATG 6 cut(s) 95, 1062, 1087, 1140, 1579, 1634
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 4 cut(s) 594, 852, 994, 1535
Cfr13I GGNCC 3 cut(s) 243, 628, 1491
CseI GACGC 1 cut(s) 325
CsiI ACCWGGT 2 cut(s) 630, 1026
Csp6I GTAC 1 cut(s) 327
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 4 cut(s) 361, 410, 1077, 1398
DpnI GATC 5 cut(s) 185, 191, 215, 302, 892
DpnII GATC 5 cut(s) 183, 189, 213, 300, 890
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 42
Eco130I CCWWGG 3 cut(s) 502, 1066, 1419
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 733
Eco47I GGWCC 2 cut(s) 628, 1491
Eco53kI GAGCTC 1 cut(s) 42
Eco57I CTGAAG 3 cut(s) 19, 289, 1252
Eco88I CYCGRG 1 cut(s) 1581
EcoICRI GAGCTC 1 cut(s) 42
EcoO109I RGGNCCY 2 cut(s) 628, 1491
EcoRII CCWGG 6 cut(s) 322, 630, 638, 1026, 1356, 1624
EcoT14I CCWWGG 3 cut(s) 502, 1066, 1419
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 3 cut(s) 502, 1066, 1419
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FaqI GGGAC 3 cut(s) 15, 641, 1477
FauI CCCGC 2 cut(s) 213, 1339
FbaI TGATCA 1 cut(s) 213
FblI GTMKAC 1 cut(s) 1678
Fnu4HI GCNGC 4 cut(s) 539, 855, 1257, 1538
FokI GGATG 6 cut(s) 82, 1049, 1094, 1127, 1586, 1641
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 4 cut(s) 539, 855, 1257, 1538
FspBI CTAG 5 cut(s) 432, 597, 666, 851, 873
GluI GCNGC 4 cut(s) 539, 855, 1257, 1538
HaeIII GGCC 2 cut(s) 245, 1165
HapII CCGG 2 cut(s) 713, 773
HgaI GACGC 1 cut(s) 325
HincII GTYRAC 1 cut(s) 1679
HindII GTYRAC 1 cut(s) 1679
HindIII AAGCTT 2 cut(s) 354, 384
HinfI GANTC 6 cut(s) 233, 485, 530, 559, 669, 1415
HpaII CCGG 2 cut(s) 713, 773
HphI GGTGA 4 cut(s) 184, 686, 1145, 1597
Hpy166II GTNNAC 1 cut(s) 1679
Hpy188I TCNGA 5 cut(s) 53, 271, 278, 622, 1414
Hpy188III TCNNGA 5 cut(s) 15, 37, 164, 187, 653
Hpy8I GTNNAC 1 cut(s) 1679
Hpy99I CGWCG 1 cut(s) 659
HpyAV CCTTC 5 cut(s) 43, 754, 814, 878, 1144
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 684
HpyF10VI GCNNNNNNNGC 1 cut(s) 544
HpyF3I CTNAG 4 cut(s) 361, 410, 1077, 1398
HpySE526I ACGT 1 cut(s) 684
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 5 cut(s) 183, 189, 213, 300, 890
LguI GCTCTTC 1 cut(s) 118
LmnI GCTCC 3 cut(s) 39, 47, 430
Lsp1109I GCAGC 3 cut(s) 525, 1243, 1524
LweI GCATC 3 cut(s) 157, 1071, 1619
MabI ACCWGGT 2 cut(s) 630, 1026
MaeI CTAG 5 cut(s) 432, 597, 666, 851, 873
MaeII ACGT 1 cut(s) 684
MalI GATC 5 cut(s) 185, 191, 215, 302, 892
MboI GATC 5 cut(s) 183, 189, 213, 300, 890
MboII GAAGA 7 cut(s) 105, 108, 111, 114, 295, 900, 1629
MhlI GDGCHC 3 cut(s) 44, 450, 1234
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 2 cut(s) 154, 1594
MnlI CCTC 9 cut(s) 109, 1155, 1172, 1175, 1354, 1360, 1393, 1505, 1564
MseI TTAA 9 cut(s) 141, 258, 351, 516, 908, 930, 1089, 1281, 1377
MslI CAYNNNNRTG 2 cut(s) 1071, 1564
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 2 cut(s) 713, 773
MspR9I CCNGG 7 cut(s) 324, 632, 640, 774, 1028, 1358, 1626
Mva1269I GAATGC 2 cut(s) 1045, 1626
MvaI CCWGG 6 cut(s) 324, 632, 640, 1028, 1358, 1626
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 544
NciI CCSGG 1 cut(s) 774
NcoI CCATGG 2 cut(s) 502, 1066
NdeII GATC 5 cut(s) 183, 189, 213, 300, 890
NheI GCTAGC 1 cut(s) 850
NlaIV GGNNCC 4 cut(s) 629, 1025, 1493, 1509
NspI RCATGY 3 cut(s) 568, 1387, 1563
NspV TTCGAA 1 cut(s) 402
PaqCI CACCTGC 1 cut(s) 499
PciI ACATGT 1 cut(s) 564
PciSI GCTCTTC 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PctI GAATGC 2 cut(s) 1045, 1626
PfeI GAWTC 5 cut(s) 233, 485, 559, 669, 1415
PflMI CCANNNNNTGG 1 cut(s) 388
PfoI TCCNGGA 2 cut(s) 638, 1356
PkrI GCNGC 4 cut(s) 540, 856, 1258, 1539
PleI GAGTC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 524
PpuMI RGGWCCY 2 cut(s) 628, 1491
PscI ACATGT 1 cut(s) 564
PshBI ATTAAT 1 cut(s) 1281
Psp124BI GAGCTC 1 cut(s) 44
Psp5II RGGWCCY 2 cut(s) 628, 1491
Psp6I CCWGG 6 cut(s) 322, 630, 638, 1026, 1356, 1624
PspGI CCWGG 6 cut(s) 322, 630, 638, 1026, 1356, 1624
PspN4I GGNNCC 4 cut(s) 629, 1025, 1493, 1509
PspPI GGNCC 3 cut(s) 243, 628, 1491
PspPPI RGGWCCY 2 cut(s) 628, 1491
PstI CTGCAG 1 cut(s) 1261
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
RseI CAYNNNNRTG 2 cut(s) 1071, 1564
SacI GAGCTC 1 cut(s) 44
SalI GTCGAC 1 cut(s) 1677
SapI GCTCTTC 1 cut(s) 118
SaqAI TTAA 9 cut(s) 141, 258, 351, 516, 908, 930, 1089, 1281, 1377
SatI GCNGC 4 cut(s) 539, 855, 1257, 1538
Sau3AI GATC 5 cut(s) 183, 189, 213, 300, 890
Sau96I GGNCC 3 cut(s) 243, 628, 1491
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 7 cut(s) 324, 632, 640, 774, 1028, 1358, 1626
SduI GDGCHC 3 cut(s) 44, 450, 1234
SexAI ACCWGGT 2 cut(s) 630, 1026
SfaNI GCATC 3 cut(s) 157, 1071, 1619
SfcI CTRYAG 1 cut(s) 1257
SfuI TTCGAA 1 cut(s) 402
SinI GGWCC 2 cut(s) 628, 1491
SmiMI CAYNNNNRTG 2 cut(s) 1071, 1564
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SsiI CCGC 4 cut(s) 145, 220, 854, 1346
SspI AATATT 1 cut(s) 297
SspMI CTAG 5 cut(s) 432, 597, 666, 851, 873
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 7 cut(s) 322, 630, 638, 772, 1026, 1356, 1624
StyI CCWWGG 3 cut(s) 502, 1066, 1419
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 687
TaqI TCGA 9 cut(s) 165, 231, 285, 402, 609, 654, 1160, 1564, 1678
TaqII GACCGA 1 cut(s) 855
TauI GCSGC 1 cut(s) 857
TfiI GAWTC 5 cut(s) 233, 485, 559, 669, 1415
Tru1I TTAA 9 cut(s) 141, 258, 351, 516, 908, 930, 1089, 1281, 1377
Tru9I TTAA 9 cut(s) 141, 258, 351, 516, 908, 930, 1089, 1281, 1377
TseI GCWGC 3 cut(s) 538, 1256, 1537
Van91I CCANNNNNTGG 1 cut(s) 388
Vha464I CTTAAG 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 628, 1491
VspI ATTAAT 1 cut(s) 1281
XapI RAATTY 2 cut(s) 23, 178
XceI RCATGY 3 cut(s) 568, 1387, 1563
XmiI GTMKAC 1 cut(s) 1678
XspI CTAG 5 cut(s) 432, 597, 666, 851, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.