RchiOBHm_Chr2g0098771

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
11097705 .. 11099971
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47354

Sequence Viewer

Length: 1665 bp
ATGGCACGCATTTCCACGCGAGAACTCTTTCTCTTTCGCTTTCGCTCCGTTCTCGCAGAACCCACAAGGCCAAATCTTTATATCTCATCCGCACACTACTGCTCTTCTTCTTCTTCTCTTAAACCCTGTTTGCTTAACCCCCGTATCTTGTCGGTTCTGGATTCATGTCAGACCCTGGCCCAGATCACCCAAATGCACACCCAATTGATCACTTGGGGTCTTTTCGATTCGTTCTGGGCAAGAAAGCTACTCAAGAGCTATTGGGATTATGGCGATATAAATTTTACGATTCTGACCTTCAGGTACATTGAAAAGCCTGGTGCTTTCTGCGTCAACACGGTGATTAAGGCTCATTCGGATAGCTCAGAGCCGGGTCGGGCTTTGGTGGTCTATTTCGAATGGCTGAGAAGAGGGTTTGCTCCCACCAGCTATAGTTTCGTGCCGCTTTTCGGGGCTTGTAGTAAGTTGGGTGATGTTGAGTGTGGGAGGAAATGCCATGGGCAGGTTTTGAAGCATGGGGTTGAGTCTGTGCTGCCTGTGGGGAACTCTTTGATTCATATGTATTGTTGTTGTGGCAGAGTTGAGCTTGCTAGGAAGGTGTTTGATGAAATGCCTAAGAGAGACGTGGTGTCGTGGAATGCGATTGTGGATGGGTATGCTAGGTTTGGGGATTTGAATGTCGCTCATATGGTGTTTGATGCAATGCCTGAGAGAAATGTGGTTGCTTGGAATGCTATGCTTGGTGGGTATTGGAAGGGAGGGAAGCCGGGGTGTGCGTTGAAGTTGTTTAGGGATATGGTGCGGATGGGAATGAAGGCTGATAGTACTGCAATGGTGAATATGCTCGCGGCTTGTGGTCGGTCAGGTAGACTGAAAGAAGGAAGATCAGTTCATGGATATCTAATTAGGGCATTCACTGAGTTGAACGTAATTGTTGAAACGGCTTTGATCGATATGTATTGTAAATGCAAAAGGGTGGAAGTGGCGCGTGTAGTGTTTGAGAGCATGGCATATAGGAACTTGGTTTGCTGGAATGCTATGATTTTGGGGCATTGTTTTGAGGGAAATCCTGAAGATGGACTTAGCCTGTTTAGTGAAATGTTAGGTAGAACGGAGTCAAACGATGGAGAAACCATCCCTGATAGGTTGTCGAGGCCAACCGAAGGCAGAAGGGGAATTCTTCCGGATGAAACTACTTTCATAGGTGTTCTTTGTGCCTGTGCGCGTGCTGGATTGTTAAGAAAAGCCAGAGATTACTTCAGGCAAATGATTAATGTTTTTCATTTAAAGCCCCAGTTTGCACATTATTGGTGCATGGCTAATGTTTATGTTGGTGTGGGGCTAATACAAGAGGCAGAGGAAATGATCAGGAAAATGCCAGAGGTTGCTGAAGATTTGACAAAAGAATCCTTGGCATGGGCTAATGTGCTTGGTTCATGTCGTTTCCAAAAAGATGTTACTGTGGGAGAACAAATTGCAATATCTCTGATTGACATGGAACCTCAAAACATTGCATATTACAGATTGTTGCTGAATGTCTATGCTGCTGCAGGCCAATGGGAGGATGTTGCTTGGGTGAAAGAAATGATGAAAGAAAACAAGGTCAGAAGGCTACCTGGCTGCAATCTTGTAGACCTGAACGAAATAGTCCATAAGAGTTGGTAA

Protein Analysis

554

Amino Acids

62.76

Weight (kDa)

8.55

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 182 - 208 4.4e-06 PPR repeat
PPR_1 PF12854 182 - 204 2.6e-06 PPR repeat
PPR_2 PF13041 207 - 240 8e-06 PPR repeat family
PPR_2 PF13041 238 - 285 3.4e-08 PPR repeat family
PPR PF01535 241 - 270 4.2e-06 PPR repeat
PPR PF01535 342 - 369 6.1e-06 PPR repeat
E_motif PF20431 485 - 544 3.7e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013087)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
AccI GTMKAC 2 cut(s) 868, 1632
AccII CGCG 4 cut(s) 19, 848, 988, 1225
AccIII TCCGGA 1 cut(s) 1183
AciI CCGC 4 cut(s) 90, 443, 802, 848
AcsI RAATTY 2 cut(s) 280, 1176
AcuI CTGAAG 4 cut(s) 283, 1092, 1243, 1410
AfaI GTAC 2 cut(s) 305, 826
AfiI CCNNNNNNNGG 6 cut(s) 449, 502, 1076, 1163, 1416, 1561
AgsI TTSAA 6 cut(s) 311, 511, 676, 781, 925, 938
AhdI GACNNNNNGTC 1 cut(s) 628
AjiI CACGTC 1 cut(s) 625
AjnI CCWGG 3 cut(s) 174, 316, 1615
AloI GAACNNNNNNTCC 2 cut(s) 873, 905
AluBI AGCT 5 cut(s) 247, 258, 363, 429, 586
AluI AGCT 5 cut(s) 247, 258, 363, 429, 586
Alw26I GTCTC 1 cut(s) 615
AlwNI CAGNNNCTG 1 cut(s) 175
Aor13HI TCCGGA 1 cut(s) 1183
AoxI GGCC 4 cut(s) 68, 177, 1154, 1552
ApeKI GCWGC 4 cut(s) 532, 1544, 1547, 1620
ApoI RAATTY 2 cut(s) 280, 1176
AseI ATTAAT 1 cut(s) 1272
Asp700I GAANNNNTTC 1 cut(s) 27
AspLEI GCGC 2 cut(s) 988, 1225
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 2 cut(s) 372, 768
AsuHPI GGTGA 5 cut(s) 178, 352, 482, 847, 1588
AsuII TTCGAA 1 cut(s) 396
BaeI ACNNNNGTAYC 2 cut(s) 127, 160
BbvI GCAGC 4 cut(s) 519, 1531, 1534, 1607
BccI CCATC 5 cut(s) 644, 799, 1070, 1118, 1142
BceAI ACGGC 1 cut(s) 957
BciT130I CCWGG 3 cut(s) 176, 318, 1617
BclI TGATCA 2 cut(s) 207, 1365
BcnI CCSGG 2 cut(s) 372, 768
BcoDI GTCTC 1 cut(s) 615
BfaI CTAG 2 cut(s) 591, 660
BfmI CTRYAG 2 cut(s) 430, 1548
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 6 cut(s) 443, 533, 849, 1545, 1548, 1621
BlsI GCNGC 6 cut(s) 444, 534, 850, 1546, 1549, 1622
BmcAI AGTACT 1 cut(s) 826
Bme1390I CCNGG 5 cut(s) 176, 318, 372, 768, 1617
BmeRI GACNNNNNGTC 1 cut(s) 628
BmgBI CACGTC 1 cut(s) 625
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 1500
BmrFI CCNGG 5 cut(s) 176, 318, 372, 768, 1617
BmrI ACTGGG 1 cut(s) 1288
BmsI GCATC 1 cut(s) 688
BmuI ACTGGG 1 cut(s) 1288
Bpu14I TTCGAA 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 2 cut(s) 372, 768
Bsa29I ATCGAT 1 cut(s) 951
BsaJI CCNNGG 4 cut(s) 174, 496, 767, 1410
BsaWI WCCGGW 1 cut(s) 1183
Bsc4I CCNNNNNNNGG 6 cut(s) 449, 502, 1076, 1163, 1416, 1561
Bse1I ACTGG 1 cut(s) 1294
Bse3DI GCAATG 3 cut(s) 708, 837, 1509
BseAI TCCGGA 1 cut(s) 1183
BseBI CCWGG 3 cut(s) 176, 318, 1617
BseCI ATCGAT 1 cut(s) 951
BseDI CCNNGG 4 cut(s) 174, 496, 767, 1410
BseGI GGATG 6 cut(s) 86, 655, 810, 1134, 1192, 1570
BseLI CCNNNNNNNGG 6 cut(s) 449, 502, 1076, 1163, 1416, 1561
BseMI GCAATG 3 cut(s) 708, 837, 1509
BseMII CTCAG 4 cut(s) 378, 395, 699, 909
BseNI ACTGG 1 cut(s) 1294
BseXI GCAGC 4 cut(s) 519, 1531, 1534, 1607
Bsh1236I CGCG 4 cut(s) 19, 848, 988, 1225
BshFI GGCC 4 cut(s) 70, 179, 1156, 1554
BshVI ATCGAT 1 cut(s) 951
BsiSI CCGG 3 cut(s) 371, 767, 1184
BslI CCNNNNNNNGG 6 cut(s) 449, 502, 1076, 1163, 1416, 1561
BsmAI GTCTC 1 cut(s) 615
BsmBI CGTCTC 1 cut(s) 615
BsmI GAATGC 4 cut(s) 643, 736, 911, 1039
BsnI GGCC 4 cut(s) 70, 179, 1156, 1554
Bsp119I TTCGAA 1 cut(s) 396
Bsp13I TCCGGA 1 cut(s) 1183
Bsp143I GATC 5 cut(s) 183, 207, 884, 948, 1365
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 4 cut(s) 90, 443, 802, 848
BspANI GGCC 4 cut(s) 70, 179, 1156, 1554
BspCNI CTCAG 4 cut(s) 377, 396, 700, 910
BspDI ATCGAT 1 cut(s) 951
BspEI TCCGGA 1 cut(s) 1183
BspFNI CGCG 4 cut(s) 19, 848, 988, 1225
BspLI GGNNCC 1 cut(s) 1500
BspMAI CTGCAG 1 cut(s) 1552
BspMI ACCTGC 1 cut(s) 493
BspQI GCTCTTC 1 cut(s) 109
BspT104I TTCGAA 1 cut(s) 396
BsrDI GCAATG 3 cut(s) 708, 837, 1509
BsrI ACTGG 1 cut(s) 1294
BssECI CCNNGG 4 cut(s) 174, 496, 767, 1410
BssMI GATC 5 cut(s) 183, 207, 884, 948, 1365
BssT1I CCWWGG 2 cut(s) 496, 1410
Bst2UI CCWGG 3 cut(s) 176, 318, 1617
Bst4CI ACNGT 2 cut(s) 340, 1462
Bst6I CTCTTC 2 cut(s) 109, 403
BstBI TTCGAA 1 cut(s) 396
BstC8I GCNNGC 5 cut(s) 7, 588, 846, 1227, 1552
BstDEI CTNAG 6 cut(s) 364, 404, 615, 708, 918, 1082
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 6 cut(s) 86, 655, 810, 1134, 1192, 1570
BstFNI CGCG 4 cut(s) 19, 848, 988, 1225
BstHHI GCGC 2 cut(s) 988, 1225
BstKTI GATC 5 cut(s) 186, 210, 887, 951, 1368
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 5 cut(s) 183, 207, 884, 948, 1365
BstMWI GCNNNNNNNGC 1 cut(s) 731
BstNI CCWGG 3 cut(s) 176, 318, 1617
BstSCI CCNGG 5 cut(s) 174, 316, 370, 766, 1615
BstSFI CTRYAG 2 cut(s) 430, 1548
BstUI CGCG 4 cut(s) 19, 848, 988, 1225
BstV1I GCAGC 4 cut(s) 519, 1531, 1534, 1607
Bsu15I ATCGAT 1 cut(s) 951
BsuRI GGCC 4 cut(s) 70, 179, 1156, 1554
BsuTUI ATCGAT 1 cut(s) 951
BtgI CCRYGG 1 cut(s) 496
BtrI CACGTC 1 cut(s) 625
BtsCI GGATG 6 cut(s) 86, 655, 810, 1134, 1192, 1570
BtsIMutI CAGTG 1 cut(s) 915
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 5 cut(s) 7, 588, 846, 1227, 1552
CaiI CAGNNNCTG 1 cut(s) 175
CfoI GCGC 2 cut(s) 988, 1225
Cfr13I GGNCC 1 cut(s) 178
ClaI ATCGAT 1 cut(s) 951
CseI GACGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 304, 825
CviAII CATG 9 cut(s) 165, 497, 515, 893, 1006, 1315, 1416, 1437, 1495
CviQI GTAC 2 cut(s) 304, 825
DdeI CTNAG 6 cut(s) 364, 404, 615, 708, 918, 1082
DpnI GATC 5 cut(s) 185, 209, 886, 950, 1367
DpnII GATC 5 cut(s) 183, 207, 884, 948, 1365
DraI TTTAAA 1 cut(s) 1287
DriI GACNNNNNGTC 1 cut(s) 628
Eam1104I CTCTTC 2 cut(s) 109, 403
Eam1105I GACNNNNNGTC 1 cut(s) 628
EarI CTCTTC 2 cut(s) 109, 403
Eco130I CCWWGG 2 cut(s) 496, 1410
Eco32I GATATC 1 cut(s) 899
Eco57I CTGAAG 4 cut(s) 283, 1092, 1243, 1410
EcoRI GAATTC 1 cut(s) 1176
EcoRII CCWGG 3 cut(s) 174, 316, 1615
EcoRV GATATC 1 cut(s) 899
EcoT14I CCWWGG 2 cut(s) 496, 1410
ErhI CCWWGG 2 cut(s) 496, 1410
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 9 cut(s) 168, 500, 518, 896, 1009, 1318, 1419, 1440, 1498
FalI AAGNNNNNCTT 2 cut(s) 1065, 1097
FatI CATG 9 cut(s) 164, 496, 514, 892, 1005, 1314, 1415, 1436, 1494
FauNDI CATATG 2 cut(s) 558, 687
FbaI TGATCA 2 cut(s) 207, 1365
FblI GTMKAC 2 cut(s) 868, 1632
Fnu4HI GCNGC 6 cut(s) 443, 533, 849, 1545, 1548, 1621
FokI GGATG 6 cut(s) 73, 662, 817, 1121, 1199, 1577
Fsp4HI GCNGC 6 cut(s) 443, 533, 849, 1545, 1548, 1621
FspBI CTAG 2 cut(s) 591, 660
GlaI GCGC 2 cut(s) 987, 1224
GluI GCNGC 6 cut(s) 443, 533, 849, 1545, 1548, 1621
HaeIII GGCC 4 cut(s) 70, 179, 1156, 1554
HapII CCGG 3 cut(s) 371, 767, 1184
HgaI GACGC 1 cut(s) 319
HhaI GCGC 2 cut(s) 988, 1225
Hin1II CATG 9 cut(s) 168, 500, 518, 896, 1009, 1318, 1419, 1440, 1498
Hin6I GCGC 2 cut(s) 986, 1223
HinP1I GCGC 2 cut(s) 986, 1223
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 7 cut(s) 161, 227, 289, 524, 553, 1115, 1406
HpaII CCGG 3 cut(s) 371, 767, 1184
HphI GGTGA 5 cut(s) 178, 352, 482, 847, 1588
Hpy166II GTNNAC 3 cut(s) 334, 869, 1633
Hpy188I TCNGA 6 cut(s) 171, 294, 358, 367, 1488, 1607
Hpy188III TCNNGA 5 cut(s) 158, 253, 1070, 1184, 1369
Hpy8I GTNNAC 3 cut(s) 334, 869, 1633
HpyAV CCTTC 8 cut(s) 307, 589, 748, 808, 872, 1157, 1164, 1602
HpyCH4III ACNGT 2 cut(s) 340, 1462
HpyCH4IV ACGT 2 cut(s) 624, 927
HpyF10VI GCNNNNNNNGC 1 cut(s) 731
HpyF3I CTNAG 6 cut(s) 364, 404, 615, 708, 918, 1082
HpySE526I ACGT 2 cut(s) 624, 927
Hsp92II CATG 9 cut(s) 168, 500, 518, 896, 1009, 1318, 1419, 1440, 1498
HspAI GCGC 2 cut(s) 986, 1223
Kpn2I TCCGGA 1 cut(s) 1183
Ksp22I TGATCA 2 cut(s) 207, 1365
Kzo9I GATC 5 cut(s) 183, 207, 884, 948, 1365
LguI GCTCTTC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 50, 424
Lsp1109I GCAGC 4 cut(s) 519, 1531, 1534, 1607
LweI GCATC 1 cut(s) 688
MaeI CTAG 2 cut(s) 591, 660
MaeII ACGT 2 cut(s) 624, 927
MaeIII GTNAC 1 cut(s) 1456
MalI GATC 5 cut(s) 185, 209, 886, 950, 1367
MboI GATC 5 cut(s) 183, 207, 884, 948, 1365
MboII GAAGA 9 cut(s) 96, 99, 102, 105, 420, 894, 1085, 1172, 1403
MfeI CAATTG 1 cut(s) 203
MluCI AATT 6 cut(s) 203, 280, 903, 930, 1176, 1473
MlyI GAGTC 2 cut(s) 533, 1124
MroI TCCGGA 1 cut(s) 1183
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 6 cut(s) 120, 135, 345, 1238, 1272, 1286
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 3 cut(s) 371, 767, 1184
MspR9I CCNGG 5 cut(s) 176, 318, 372, 768, 1617
MunI CAATTG 1 cut(s) 203
Mva1269I GAATGC 4 cut(s) 643, 736, 911, 1039
MvaI CCWGG 3 cut(s) 176, 318, 1617
MvnI CGCG 4 cut(s) 19, 848, 988, 1225
MwoI GCNNNNNNNGC 1 cut(s) 731
NciI CCSGG 2 cut(s) 372, 768
NcoI CCATGG 1 cut(s) 496
NdeI CATATG 2 cut(s) 558, 687
NdeII GATC 5 cut(s) 183, 207, 884, 948, 1365
NlaIII CATG 9 cut(s) 168, 500, 518, 896, 1009, 1318, 1419, 1440, 1498
NlaIV GGNNCC 1 cut(s) 1500
NspV TTCGAA 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 638
PctI GAATGC 4 cut(s) 643, 736, 911, 1039
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 5 cut(s) 161, 227, 289, 553, 1406
PkrI GCNGC 6 cut(s) 444, 534, 850, 1546, 1549, 1622
PleI GAGTC 2 cut(s) 532, 1123
PpsI GAGTC 2 cut(s) 532, 1123
PshBI ATTAAT 1 cut(s) 1272
Psp6I CCWGG 3 cut(s) 174, 316, 1615
PspGI CCWGG 3 cut(s) 174, 316, 1615
PspN4I GGNNCC 1 cut(s) 1500
PspPI GGNCC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 1552
PstNI CAGNNNCTG 1 cut(s) 175
RsaI GTAC 2 cut(s) 305, 826
RsaNI GTAC 2 cut(s) 304, 825
RseI CAYNNNNRTG 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 109
SaqAI TTAA 6 cut(s) 120, 135, 345, 1238, 1272, 1286
SatI GCNGC 6 cut(s) 443, 533, 849, 1545, 1548, 1621
Sau3AI GATC 5 cut(s) 183, 207, 884, 948, 1365
Sau96I GGNCC 1 cut(s) 178
ScaI AGTACT 1 cut(s) 826
SchI GAGTC 2 cut(s) 533, 1124
ScrFI CCNGG 5 cut(s) 176, 318, 372, 768, 1617
SfaNI GCATC 1 cut(s) 688
SfcI CTRYAG 2 cut(s) 430, 1548
SfuI TTCGAA 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 6 cut(s) 203, 280, 903, 930, 1176, 1473
SsiI CCGC 4 cut(s) 90, 443, 802, 848
SspMI CTAG 2 cut(s) 591, 660
StyD4I CCNGG 5 cut(s) 174, 316, 370, 766, 1615
StyI CCWWGG 2 cut(s) 496, 1410
TaaI ACNGT 2 cut(s) 340, 1462
TaiI ACGT 2 cut(s) 627, 930
TaqI TCGA 4 cut(s) 225, 396, 951, 1151
TaqII GACCGA 1 cut(s) 849
TasI AATT 6 cut(s) 203, 280, 903, 930, 1176, 1473
TatI WGTACW 1 cut(s) 824
TauI GCSGC 2 cut(s) 445, 851
TfiI GAWTC 5 cut(s) 161, 227, 289, 553, 1406
Tru1I TTAA 6 cut(s) 120, 135, 345, 1238, 1272, 1286
Tru9I TTAA 6 cut(s) 120, 135, 345, 1238, 1272, 1286
TscAI CASTG 1 cut(s) 922
TseI GCWGC 4 cut(s) 532, 1544, 1547, 1620
TspGWI ACGGA 2 cut(s) 37, 1127
TspRI CASTG 1 cut(s) 922
VspI ATTAAT 1 cut(s) 1272
XapI RAATTY 2 cut(s) 280, 1176
XmiI GTMKAC 2 cut(s) 868, 1632
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 2 cut(s) 591, 660
ZrmI AGTACT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.