Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G51320 |
| malus_domestica | MD15G1241200.v1.1 |
| prunus_persica | Prupe.7G172800_v2.0.a1 |
| pyrus_communis | pycom02g09790 pycom15g21270 |
| rosa_chinensis | RchiOBHm_Chr2g0098771 |
| rosa_laevigata | RLG00000016826 RLG00000037003 |
| rosa_multiflora | Rmu_sc0002776.1_g000032 Rmu_sc0004816.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00143720 |
| rosa_rugosa | Rorug02G0074800 |
| rosa_samantha | Rh2AG122400 Rh2BG126100 Rh2CG127000 Rh2DG128100 Rh7DG389800 |
| rosa_wichuraiana | Rw0G004250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 499 |
| AccI | GTMKAC | 2 cut(s) | 874, 1641 |
| AccII | CGCG | 4 cut(s) | 19, 854, 994, 1234 |
| AccIII | TCCGGA | 1 cut(s) | 1192 |
| AciI | CCGC | 3 cut(s) | 90, 449, 854 |
| AclI | AACGTT | 1 cut(s) | 1332 |
| AcsI | RAATTY | 1 cut(s) | 1185 |
| AcuI | CTGAAG | 4 cut(s) | 289, 1098, 1252, 1419 |
| AfaI | GTAC | 2 cut(s) | 311, 832 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 455, 508, 1082, 1172, 1425 |
| AgsI | TTSAA | 6 cut(s) | 317, 517, 682, 787, 931, 944 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 634 |
| AjiI | CACGTC | 1 cut(s) | 631 |
| AjnI | CCWGG | 2 cut(s) | 180, 322 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 879, 911 |
| AluBI | AGCT | 5 cut(s) | 253, 264, 369, 435, 592 |
| AluI | AGCT | 5 cut(s) | 253, 264, 369, 435, 592 |
| Alw26I | GTCTC | 1 cut(s) | 621 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 181 |
| Ama87I | CYCGRG | 1 cut(s) | 713 |
| Aor13HI | TCCGGA | 1 cut(s) | 1192 |
| AoxI | GGCC | 4 cut(s) | 68, 183, 1163, 1561 |
| ApeKI | GCWGC | 4 cut(s) | 538, 1553, 1556, 1629 |
| ApoI | RAATTY | 1 cut(s) | 1185 |
| AseI | ATTAAT | 1 cut(s) | 1281 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 27, 1656 |
| AspLEI | GCGC | 2 cut(s) | 994, 1234 |
| AspS9I | GGNCC | 1 cut(s) | 184 |
| AsuC2I | CCSGG | 4 cut(s) | 378, 774, 1303, 1626 |
| AsuHPI | GGTGA | 5 cut(s) | 184, 358, 488, 853, 1597 |
| AsuII | TTCGAA | 1 cut(s) | 402 |
| AsuNHI | GCTAGC | 1 cut(s) | 596 |
| AvaI | CYCGRG | 1 cut(s) | 713 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 133, 166 |
| BbvI | GCAGC | 4 cut(s) | 525, 1540, 1568, 1616 |
| BccI | CCATC | 5 cut(s) | 650, 805, 1076, 1124, 1148 |
| BceAI | ACGGC | 1 cut(s) | 963 |
| BciT130I | CCWGG | 2 cut(s) | 182, 324 |
| BclI | TGATCA | 2 cut(s) | 213, 1374 |
| BcnI | CCSGG | 4 cut(s) | 378, 774, 1303, 1626 |
| BcoDI | GTCTC | 1 cut(s) | 621 |
| BfaI | CTAG | 2 cut(s) | 597, 666 |
| BfmI | CTRYAG | 3 cut(s) | 436, 1528, 1554 |
| BfuAI | ACCTGC | 1 cut(s) | 499 |
| BisI | GCNGC | 6 cut(s) | 449, 539, 855, 1554, 1557, 1630 |
| BlsI | GCNGC | 6 cut(s) | 450, 540, 856, 1555, 1558, 1631 |
| BmcAI | AGTACT | 1 cut(s) | 832 |
| Bme1390I | CCNGG | 6 cut(s) | 182, 324, 378, 774, 1303, 1626 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 634 |
| BmeT110I | CYCGRG | 1 cut(s) | 713 |
| BmgBI | CACGTC | 1 cut(s) | 631 |
| BmgT120I | GGNCC | 1 cut(s) | 184 |
| BmiI | GGNNCC | 1 cut(s) | 1509 |
| BmrFI | CCNGG | 6 cut(s) | 182, 324, 378, 774, 1303, 1626 |
| BmsI | GCATC | 1 cut(s) | 694 |
| BmtI | GCTAGC | 1 cut(s) | 600 |
| Bpu14I | TTCGAA | 1 cut(s) | 402 |
| BpuEI | CTTGAG | 1 cut(s) | 242 |
| BpuMI | CCSGG | 4 cut(s) | 378, 774, 1303, 1626 |
| Bsa29I | ATCGAT | 1 cut(s) | 957 |
| BsaJI | CCNNGG | 4 cut(s) | 502, 773, 1301, 1419 |
| BsaWI | WCCGGW | 1 cut(s) | 1192 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 455, 508, 1082, 1172, 1425 |
| Bse3DI | GCAATG | 3 cut(s) | 714, 843, 1518 |
| BseAI | TCCGGA | 1 cut(s) | 1192 |
| BseBI | CCWGG | 2 cut(s) | 182, 324 |
| BseCI | ATCGAT | 1 cut(s) | 957 |
| BseDI | CCNNGG | 4 cut(s) | 502, 773, 1301, 1419 |
| BseGI | GGATG | 5 cut(s) | 86, 661, 816, 1140, 1201 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 455, 508, 1082, 1172, 1425 |
| BseMI | GCAATG | 3 cut(s) | 714, 843, 1518 |
| BseMII | CTCAG | 4 cut(s) | 384, 401, 915, 1137 |
| BseXI | GCAGC | 4 cut(s) | 525, 1540, 1568, 1616 |
| Bsh1236I | CGCG | 4 cut(s) | 19, 854, 994, 1234 |
| BshFI | GGCC | 4 cut(s) | 70, 185, 1165, 1563 |
| BshVI | ATCGAT | 1 cut(s) | 957 |
| BsiHKCI | CYCGRG | 1 cut(s) | 713 |
| BsiSI | CCGG | 5 cut(s) | 377, 773, 1193, 1303, 1626 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 455, 508, 1082, 1172, 1425 |
| BsmAI | GTCTC | 1 cut(s) | 621 |
| BsmBI | CGTCTC | 1 cut(s) | 621 |
| BsmI | GAATGC | 4 cut(s) | 649, 742, 917, 1045 |
| BsnI | GGCC | 4 cut(s) | 70, 185, 1165, 1563 |
| BsoBI | CYCGRG | 1 cut(s) | 713 |
| Bsp119I | TTCGAA | 1 cut(s) | 402 |
| Bsp13I | TCCGGA | 1 cut(s) | 1192 |
| Bsp143I | GATC | 5 cut(s) | 189, 213, 890, 954, 1374 |
| Bsp19I | CCATGG | 1 cut(s) | 502 |
| BspACI | CCGC | 3 cut(s) | 90, 449, 854 |
| BspANI | GGCC | 4 cut(s) | 70, 185, 1165, 1563 |
| BspCNI | CTCAG | 4 cut(s) | 383, 402, 916, 1138 |
| BspDI | ATCGAT | 1 cut(s) | 957 |
| BspEI | TCCGGA | 1 cut(s) | 1192 |
| BspFNI | CGCG | 4 cut(s) | 19, 854, 994, 1234 |
| BspLI | GGNNCC | 1 cut(s) | 1509 |
| BspMAI | CTGCAG | 1 cut(s) | 1558 |
| BspMI | ACCTGC | 1 cut(s) | 499 |
| BspOI | GCTAGC | 1 cut(s) | 600 |
| BspT104I | TTCGAA | 1 cut(s) | 402 |
| BsrDI | GCAATG | 3 cut(s) | 714, 843, 1518 |
| BssECI | CCNNGG | 4 cut(s) | 502, 773, 1301, 1419 |
| BssMI | GATC | 5 cut(s) | 189, 213, 890, 954, 1374 |
| BssT1I | CCWWGG | 2 cut(s) | 502, 1419 |
| Bst2UI | CCWGG | 2 cut(s) | 182, 324 |
| Bst4CI | ACNGT | 2 cut(s) | 346, 1471 |
| Bst6I | CTCTTC | 3 cut(s) | 109, 409, 1145 |
| BstBI | TTCGAA | 1 cut(s) | 402 |
| BstC8I | GCNNGC | 6 cut(s) | 7, 594, 598, 852, 1236, 1561 |
| BstDEI | CTNAG | 4 cut(s) | 370, 410, 924, 1146 |
| BstDSI | CCRYGG | 1 cut(s) | 502 |
| BstF5I | GGATG | 5 cut(s) | 86, 661, 816, 1140, 1201 |
| BstFNI | CGCG | 4 cut(s) | 19, 854, 994, 1234 |
| BstHHI | GCGC | 2 cut(s) | 994, 1234 |
| BstKTI | GATC | 5 cut(s) | 192, 216, 893, 957, 1377 |
| BstMAI | GTCTC | 1 cut(s) | 621 |
| BstMBI | GATC | 5 cut(s) | 189, 213, 890, 954, 1374 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 737 |
| BstNI | CCWGG | 2 cut(s) | 182, 324 |
| BstSCI | CCNGG | 6 cut(s) | 180, 322, 376, 772, 1301, 1624 |
| BstSFI | CTRYAG | 3 cut(s) | 436, 1528, 1554 |
| BstUI | CGCG | 4 cut(s) | 19, 854, 994, 1234 |
| BstV1I | GCAGC | 4 cut(s) | 525, 1540, 1568, 1616 |
| Bsu15I | ATCGAT | 1 cut(s) | 957 |
| BsuRI | GGCC | 4 cut(s) | 70, 185, 1165, 1563 |
| BsuTUI | ATCGAT | 1 cut(s) | 957 |
| BtgI | CCRYGG | 1 cut(s) | 502 |
| BtrI | CACGTC | 1 cut(s) | 631 |
| BtsCI | GGATG | 5 cut(s) | 86, 661, 816, 1140, 1201 |
| BtsIMutI | CAGTG | 1 cut(s) | 921 |
| BveI | ACCTGC | 1 cut(s) | 499 |
| Cac8I | GCNNGC | 6 cut(s) | 7, 594, 598, 852, 1236, 1561 |
| CaiI | CAGNNNCTG | 1 cut(s) | 181 |
| CfoI | GCGC | 2 cut(s) | 994, 1234 |
| Cfr13I | GGNCC | 1 cut(s) | 184 |
| ClaI | ATCGAT | 1 cut(s) | 957 |
| CseI | GACGC | 1 cut(s) | 325 |
| Csp6I | GTAC | 2 cut(s) | 310, 831 |
| CviAII | CATG | 9 cut(s) | 171, 503, 521, 899, 1012, 1324, 1425, 1446, 1504 |
| CviQI | GTAC | 2 cut(s) | 310, 831 |
| DdeI | CTNAG | 4 cut(s) | 370, 410, 924, 1146 |
| DpnI | GATC | 5 cut(s) | 191, 215, 892, 956, 1376 |
| DpnII | GATC | 5 cut(s) | 189, 213, 890, 954, 1374 |
| DraI | TTTAAA | 1 cut(s) | 1296 |
| DriI | GACNNNNNGTC | 1 cut(s) | 634 |
| Eam1104I | CTCTTC | 3 cut(s) | 109, 409, 1145 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 634 |
| EarI | CTCTTC | 3 cut(s) | 109, 409, 1145 |
| Eco130I | CCWWGG | 2 cut(s) | 502, 1419 |
| Eco32I | GATATC | 1 cut(s) | 905 |
| Eco57I | CTGAAG | 4 cut(s) | 289, 1098, 1252, 1419 |
| Eco88I | CYCGRG | 1 cut(s) | 713 |
| EcoRI | GAATTC | 1 cut(s) | 1185 |
| EcoRII | CCWGG | 2 cut(s) | 180, 322 |
| EcoRV | GATATC | 1 cut(s) | 905 |
| EcoT14I | CCWWGG | 2 cut(s) | 502, 1419 |
| ErhI | CCWWGG | 2 cut(s) | 502, 1419 |
| Esp3I | CGTCTC | 1 cut(s) | 621 |
| FaeI | CATG | 9 cut(s) | 174, 506, 524, 902, 1015, 1327, 1428, 1449, 1507 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1071, 1103 |
| FatI | CATG | 9 cut(s) | 170, 502, 520, 898, 1011, 1323, 1424, 1445, 1503 |
| FauNDI | CATATG | 2 cut(s) | 564, 693 |
| FbaI | TGATCA | 2 cut(s) | 213, 1374 |
| FblI | GTMKAC | 2 cut(s) | 874, 1641 |
| Fnu4HI | GCNGC | 6 cut(s) | 449, 539, 855, 1554, 1557, 1630 |
| FokI | GGATG | 5 cut(s) | 73, 668, 823, 1127, 1208 |
| Fsp4HI | GCNGC | 6 cut(s) | 449, 539, 855, 1554, 1557, 1630 |
| FspBI | CTAG | 2 cut(s) | 597, 666 |
| GlaI | GCGC | 2 cut(s) | 993, 1233 |
| GluI | GCNGC | 6 cut(s) | 449, 539, 855, 1554, 1557, 1630 |
| HaeIII | GGCC | 4 cut(s) | 70, 185, 1165, 1563 |
| HapII | CCGG | 5 cut(s) | 377, 773, 1193, 1303, 1626 |
| HgaI | GACGC | 1 cut(s) | 325 |
| HhaI | GCGC | 2 cut(s) | 994, 1234 |
| Hin1II | CATG | 9 cut(s) | 174, 506, 524, 902, 1015, 1327, 1428, 1449, 1507 |
| Hin6I | GCGC | 2 cut(s) | 992, 1232 |
| HinP1I | GCGC | 2 cut(s) | 992, 1232 |
| HincII | GTYRAC | 1 cut(s) | 340 |
| HindII | GTYRAC | 1 cut(s) | 340 |
| HinfI | GANTC | 7 cut(s) | 167, 233, 295, 530, 559, 1121, 1415 |
| HpaII | CCGG | 5 cut(s) | 377, 773, 1193, 1303, 1626 |
| HphI | GGTGA | 5 cut(s) | 184, 358, 488, 853, 1597 |
| Hpy166II | GTNNAC | 4 cut(s) | 340, 875, 1642, 1660 |
| Hpy188I | TCNGA | 6 cut(s) | 177, 300, 364, 373, 1497, 1616 |
| Hpy188III | TCNNGA | 5 cut(s) | 164, 259, 1076, 1193, 1378 |
| Hpy8I | GTNNAC | 4 cut(s) | 340, 875, 1642, 1660 |
| HpyAV | CCTTC | 6 cut(s) | 313, 754, 814, 878, 1166, 1611 |
| HpyCH4III | ACNGT | 2 cut(s) | 346, 1471 |
| HpyCH4IV | ACGT | 3 cut(s) | 630, 933, 1332 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 737 |
| HpyF3I | CTNAG | 4 cut(s) | 370, 410, 924, 1146 |
| HpySE526I | ACGT | 3 cut(s) | 630, 933, 1332 |
| Hsp92II | CATG | 9 cut(s) | 174, 506, 524, 902, 1015, 1327, 1428, 1449, 1507 |
| HspAI | GCGC | 2 cut(s) | 992, 1232 |
| Kpn2I | TCCGGA | 1 cut(s) | 1192 |
| Ksp22I | TGATCA | 2 cut(s) | 213, 1374 |
| Kzo9I | GATC | 5 cut(s) | 189, 213, 890, 954, 1374 |
| LmnI | GCTCC | 2 cut(s) | 50, 430 |
| Lsp1109I | GCAGC | 4 cut(s) | 525, 1540, 1568, 1616 |
| LweI | GCATC | 1 cut(s) | 694 |
| MaeI | CTAG | 2 cut(s) | 597, 666 |
| MaeII | ACGT | 3 cut(s) | 630, 933, 1332 |
| MaeIII | GTNAC | 1 cut(s) | 1465 |
| MalI | GATC | 5 cut(s) | 191, 215, 892, 956, 1376 |
| MboI | GATC | 5 cut(s) | 189, 213, 890, 954, 1374 |
| MfeI | CAATTG | 1 cut(s) | 209 |
| MluCI | AATT | 5 cut(s) | 209, 286, 909, 1185, 1482 |
| MlyI | GAGTC | 2 cut(s) | 539, 1130 |
| MroI | TCCGGA | 1 cut(s) | 1192 |
| MroXI | GAANNNNTTC | 2 cut(s) | 27, 1656 |
| MseI | TTAA | 6 cut(s) | 126, 141, 351, 1247, 1281, 1295 |
| MslI | CAYNNNNRTG | 1 cut(s) | 197 |
| MspI | CCGG | 5 cut(s) | 377, 773, 1193, 1303, 1626 |
| MspR9I | CCNGG | 6 cut(s) | 182, 324, 378, 774, 1303, 1626 |
| MunI | CAATTG | 1 cut(s) | 209 |
| Mva1269I | GAATGC | 4 cut(s) | 649, 742, 917, 1045 |
| MvaI | CCWGG | 2 cut(s) | 182, 324 |
| MvnI | CGCG | 4 cut(s) | 19, 854, 994, 1234 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 737 |
| NciI | CCSGG | 4 cut(s) | 378, 774, 1303, 1626 |
| NcoI | CCATGG | 1 cut(s) | 502 |
| NdeI | CATATG | 2 cut(s) | 564, 693 |
| NdeII | GATC | 5 cut(s) | 189, 213, 890, 954, 1374 |
| NheI | GCTAGC | 1 cut(s) | 596 |
| NlaIII | CATG | 9 cut(s) | 174, 506, 524, 902, 1015, 1327, 1428, 1449, 1507 |
| NlaIV | GGNNCC | 1 cut(s) | 1509 |
| NspV | TTCGAA | 1 cut(s) | 402 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 644 |
| PctI | GAATGC | 4 cut(s) | 649, 742, 917, 1045 |
| PdmI | GAANNNNTTC | 2 cut(s) | 27, 1656 |
| PfeI | GAWTC | 5 cut(s) | 167, 233, 295, 559, 1415 |
| PkrI | GCNGC | 6 cut(s) | 450, 540, 856, 1555, 1558, 1631 |
| PleI | GAGTC | 2 cut(s) | 538, 1129 |
| PpsI | GAGTC | 2 cut(s) | 538, 1129 |
| PshBI | ATTAAT | 1 cut(s) | 1281 |
| Psp1406I | AACGTT | 1 cut(s) | 1332 |
| Psp6I | CCWGG | 2 cut(s) | 180, 322 |
| PspGI | CCWGG | 2 cut(s) | 180, 322 |
| PspN4I | GGNNCC | 1 cut(s) | 1509 |
| PspPI | GGNCC | 1 cut(s) | 184 |
| PstI | CTGCAG | 1 cut(s) | 1558 |
| PstNI | CAGNNNCTG | 1 cut(s) | 181 |
| RsaI | GTAC | 2 cut(s) | 311, 832 |
| RsaNI | GTAC | 2 cut(s) | 310, 831 |
| RseI | CAYNNNNRTG | 1 cut(s) | 197 |
| SaqAI | TTAA | 6 cut(s) | 126, 141, 351, 1247, 1281, 1295 |
| SatI | GCNGC | 6 cut(s) | 449, 539, 855, 1554, 1557, 1630 |
| Sau3AI | GATC | 5 cut(s) | 189, 213, 890, 954, 1374 |
| Sau96I | GGNCC | 1 cut(s) | 184 |
| ScaI | AGTACT | 1 cut(s) | 832 |
| SchI | GAGTC | 2 cut(s) | 539, 1130 |
| ScrFI | CCNGG | 6 cut(s) | 182, 324, 378, 774, 1303, 1626 |
| SfaNI | GCATC | 1 cut(s) | 694 |
| SfcI | CTRYAG | 3 cut(s) | 436, 1528, 1554 |
| SfuI | TTCGAA | 1 cut(s) | 402 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 197 |
| SmlI | CTYRAG | 1 cut(s) | 257 |
| SmoI | CTYRAG | 1 cut(s) | 257 |
| Sse9I | AATT | 5 cut(s) | 209, 286, 909, 1185, 1482 |
| SsiI | CCGC | 3 cut(s) | 90, 449, 854 |
| SspMI | CTAG | 2 cut(s) | 597, 666 |
| StyD4I | CCNGG | 6 cut(s) | 180, 322, 376, 772, 1301, 1624 |
| StyI | CCWWGG | 2 cut(s) | 502, 1419 |
| TaaI | ACNGT | 2 cut(s) | 346, 1471 |
| TaiI | ACGT | 3 cut(s) | 633, 936, 1335 |
| TaqI | TCGA | 4 cut(s) | 231, 402, 957, 1160 |
| TaqII | GACCGA | 1 cut(s) | 855 |
| TasI | AATT | 5 cut(s) | 209, 286, 909, 1185, 1482 |
| TatI | WGTACW | 1 cut(s) | 830 |
| TauI | GCSGC | 2 cut(s) | 451, 857 |
| TfiI | GAWTC | 5 cut(s) | 167, 233, 295, 559, 1415 |
| Tru1I | TTAA | 6 cut(s) | 126, 141, 351, 1247, 1281, 1295 |
| Tru9I | TTAA | 6 cut(s) | 126, 141, 351, 1247, 1281, 1295 |
| TscAI | CASTG | 1 cut(s) | 928 |
| TseI | GCWGC | 4 cut(s) | 538, 1553, 1556, 1629 |
| TspGWI | ACGGA | 1 cut(s) | 37 |
| TspRI | CASTG | 1 cut(s) | 928 |
| VspI | ATTAAT | 1 cut(s) | 1281 |
| XapI | RAATTY | 1 cut(s) | 1185 |
| XmiI | GTMKAC | 2 cut(s) | 874, 1641 |
| XmnI | GAANNNNTTC | 2 cut(s) | 27, 1656 |
| XspI | CTAG | 2 cut(s) | 597, 666 |
| ZrmI | AGTACT | 1 cut(s) | 832 |