RLG00000016826

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
10395591 .. 10397264
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016826

Sequence Viewer

Length: 1674 bp
ATGGCACGCATTTCCACGCGAGAACTCTTTCTCTTTCGCTTTCGCTCCGTTCTCGCAGAACCCACAAGGCCAAATCTTTATATCTCATCCGCACACTACTACTCTTCTTCTTCTTCTTCTTCTCTTAAACCCTCTTTGCTTAACCCCCGTATCTTCTCGGTTCTGGATTCATGTCAGAGCCTGGCCCAGATCACCCAAATGCACACCCAATTGATCACTTGGGGTCTTTTCGATTCATTCTGGGCAAGAAAGCTACTCAAGAGCTATTGGGATTATGGCGATATAAATTATACGATTCTGACCTTCAGGTACATTGAAAAGCCTGGTGCTTTCTGCGTCAACACGGTGATTAAGGCTCATTCGGATAGCTCAGAGCCGGGTCGGGCTTTGGTGGTCTATTTCGAATGGCTGAGAAGAGGGTTTGCTCCCACCAGCTATAGTTTCGTGCCGCTTTTCGGGGCTTGTAGTAAGTTGGGTGATGTTGAGTGTGGGAGGAAATGCCATGGGCAGGTTTTGAAGCATGGGGTTGAGTCTGTGCTGCCTGTGGGGAACTCTTTGATTCATATGTATTGTTGTTGTGGGAGAGTTGAGCTTGCTAGCAAGGTGTTTGATGAAATGCCAAAGAGAGACGTGGTGTCGTGGAATGCGATTGTGGATGGGTATGCTAGGTTTGGGGATTTGAATGTGGCTCATATGGTGTTTGATGCAATGCCCGAGAGAAATGTGGTTGCTTGGAATGCTATGCTTGGTGGGTATTGGAAGGGAGGGAAGCCGGGGTGTGCGTTGAAGTTGTTTAGGGATATGGTGGGGATGGGAATGAAGGCTGATAGTACTGCAATGGTGAATATGCTCGCGGCTTGTGGTCGGTCAGGTAGACTGAAAGAAGGAAGATCAGTTCATGGATATCTAATTAGGGCATTCACTGAGTTGAACGTAGTTGTTGAAACGGCTTTGATCGATATGTATTGTAAATGCAAAAGGGTGGAAGTGGCGCGTGTAGTGTTTGAGAGCATGGCATATAGGAACTTGTTTTGCTGGAATGCTATGATTTTGGGGCATTGTTTTGAGGGAAATCCTGAAGATGGACTTCGCCTGTTTAGTGAAATGTTAGGTATAACAGAGTCAAACGATGGGGAAACCATCCCTGAGAAGAGGTTGTCGAGGCCAACCGAAGGCAGAGGGGGAATTCTTCCGGATGAAACTACTTTCATAGGTATTCTTTGTGCCTGTGCGCGTGCTGGATTGTTAAGAGAAGCCAGAGATTACTTCAGGCAAATGATTAATGTGTTCCATTTAAAGCCCCGGTTTGCACATTATTGGTGCATGGCTAACGTTTATGTTGGTGTGGGGCTAATACAAGAGGCAGAGGAAATGATCAGGAAAATGCCAGAGGTTGCTGAAGATTTGACAAAAGAATCCTTGGCATGGGCTAATGTGCTTGGTTCATGTCGTTTCCAAAAAAATGTTACTGTGGGAGAACAAATTGCAATATCTCTGATTGACATGGAACCTCAAAACATTGCATACTACAGATTGTTGCTGAATGTCTATGCTGCAGCAGGCCAATGGGAAGATGTTGCTTGGGTGAAAGAAATGATGAAAGAAAACAAGGTCAGAAGGCTACCCGGCTGCAATCTTGTAGACCTGAACGAAATAGTTCACAAGAGTTGGTAA

Protein Analysis

558

Amino Acids

62.99

Weight (kDa)

8.41

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 184 - 210 8.1e-06 PPR repeat
PPR_1 PF12854 184 - 206 1.6e-06 PPR repeat
PPR_2 PF13041 209 - 242 8e-06 PPR repeat family
PPR_2 PF13041 240 - 287 3e-07 PPR repeat family
E_motif PF20431 488 - 547 3.2e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013087)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 499
AccI GTMKAC 2 cut(s) 874, 1641
AccII CGCG 4 cut(s) 19, 854, 994, 1234
AccIII TCCGGA 1 cut(s) 1192
AciI CCGC 3 cut(s) 90, 449, 854
AclI AACGTT 1 cut(s) 1332
AcsI RAATTY 1 cut(s) 1185
AcuI CTGAAG 4 cut(s) 289, 1098, 1252, 1419
AfaI GTAC 2 cut(s) 311, 832
AfiI CCNNNNNNNGG 5 cut(s) 455, 508, 1082, 1172, 1425
AgsI TTSAA 6 cut(s) 317, 517, 682, 787, 931, 944
AhdI GACNNNNNGTC 1 cut(s) 634
AjiI CACGTC 1 cut(s) 631
AjnI CCWGG 2 cut(s) 180, 322
AloI GAACNNNNNNTCC 2 cut(s) 879, 911
AluBI AGCT 5 cut(s) 253, 264, 369, 435, 592
AluI AGCT 5 cut(s) 253, 264, 369, 435, 592
Alw26I GTCTC 1 cut(s) 621
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 713
Aor13HI TCCGGA 1 cut(s) 1192
AoxI GGCC 4 cut(s) 68, 183, 1163, 1561
ApeKI GCWGC 4 cut(s) 538, 1553, 1556, 1629
ApoI RAATTY 1 cut(s) 1185
AseI ATTAAT 1 cut(s) 1281
Asp700I GAANNNNTTC 2 cut(s) 27, 1656
AspLEI GCGC 2 cut(s) 994, 1234
AspS9I GGNCC 1 cut(s) 184
AsuC2I CCSGG 4 cut(s) 378, 774, 1303, 1626
AsuHPI GGTGA 5 cut(s) 184, 358, 488, 853, 1597
AsuII TTCGAA 1 cut(s) 402
AsuNHI GCTAGC 1 cut(s) 596
AvaI CYCGRG 1 cut(s) 713
BaeI ACNNNNGTAYC 2 cut(s) 133, 166
BbvI GCAGC 4 cut(s) 525, 1540, 1568, 1616
BccI CCATC 5 cut(s) 650, 805, 1076, 1124, 1148
BceAI ACGGC 1 cut(s) 963
BciT130I CCWGG 2 cut(s) 182, 324
BclI TGATCA 2 cut(s) 213, 1374
BcnI CCSGG 4 cut(s) 378, 774, 1303, 1626
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 2 cut(s) 597, 666
BfmI CTRYAG 3 cut(s) 436, 1528, 1554
BfuAI ACCTGC 1 cut(s) 499
BisI GCNGC 6 cut(s) 449, 539, 855, 1554, 1557, 1630
BlsI GCNGC 6 cut(s) 450, 540, 856, 1555, 1558, 1631
BmcAI AGTACT 1 cut(s) 832
Bme1390I CCNGG 6 cut(s) 182, 324, 378, 774, 1303, 1626
BmeRI GACNNNNNGTC 1 cut(s) 634
BmeT110I CYCGRG 1 cut(s) 713
BmgBI CACGTC 1 cut(s) 631
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 1509
BmrFI CCNGG 6 cut(s) 182, 324, 378, 774, 1303, 1626
BmsI GCATC 1 cut(s) 694
BmtI GCTAGC 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 4 cut(s) 378, 774, 1303, 1626
Bsa29I ATCGAT 1 cut(s) 957
BsaJI CCNNGG 4 cut(s) 502, 773, 1301, 1419
BsaWI WCCGGW 1 cut(s) 1192
Bsc4I CCNNNNNNNGG 5 cut(s) 455, 508, 1082, 1172, 1425
Bse3DI GCAATG 3 cut(s) 714, 843, 1518
BseAI TCCGGA 1 cut(s) 1192
BseBI CCWGG 2 cut(s) 182, 324
BseCI ATCGAT 1 cut(s) 957
BseDI CCNNGG 4 cut(s) 502, 773, 1301, 1419
BseGI GGATG 5 cut(s) 86, 661, 816, 1140, 1201
BseLI CCNNNNNNNGG 5 cut(s) 455, 508, 1082, 1172, 1425
BseMI GCAATG 3 cut(s) 714, 843, 1518
BseMII CTCAG 4 cut(s) 384, 401, 915, 1137
BseXI GCAGC 4 cut(s) 525, 1540, 1568, 1616
Bsh1236I CGCG 4 cut(s) 19, 854, 994, 1234
BshFI GGCC 4 cut(s) 70, 185, 1165, 1563
BshVI ATCGAT 1 cut(s) 957
BsiHKCI CYCGRG 1 cut(s) 713
BsiSI CCGG 5 cut(s) 377, 773, 1193, 1303, 1626
BslI CCNNNNNNNGG 5 cut(s) 455, 508, 1082, 1172, 1425
BsmAI GTCTC 1 cut(s) 621
BsmBI CGTCTC 1 cut(s) 621
BsmI GAATGC 4 cut(s) 649, 742, 917, 1045
BsnI GGCC 4 cut(s) 70, 185, 1165, 1563
BsoBI CYCGRG 1 cut(s) 713
Bsp119I TTCGAA 1 cut(s) 402
Bsp13I TCCGGA 1 cut(s) 1192
Bsp143I GATC 5 cut(s) 189, 213, 890, 954, 1374
Bsp19I CCATGG 1 cut(s) 502
BspACI CCGC 3 cut(s) 90, 449, 854
BspANI GGCC 4 cut(s) 70, 185, 1165, 1563
BspCNI CTCAG 4 cut(s) 383, 402, 916, 1138
BspDI ATCGAT 1 cut(s) 957
BspEI TCCGGA 1 cut(s) 1192
BspFNI CGCG 4 cut(s) 19, 854, 994, 1234
BspLI GGNNCC 1 cut(s) 1509
BspMAI CTGCAG 1 cut(s) 1558
BspMI ACCTGC 1 cut(s) 499
BspOI GCTAGC 1 cut(s) 600
BspT104I TTCGAA 1 cut(s) 402
BsrDI GCAATG 3 cut(s) 714, 843, 1518
BssECI CCNNGG 4 cut(s) 502, 773, 1301, 1419
BssMI GATC 5 cut(s) 189, 213, 890, 954, 1374
BssT1I CCWWGG 2 cut(s) 502, 1419
Bst2UI CCWGG 2 cut(s) 182, 324
Bst4CI ACNGT 2 cut(s) 346, 1471
Bst6I CTCTTC 3 cut(s) 109, 409, 1145
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 6 cut(s) 7, 594, 598, 852, 1236, 1561
BstDEI CTNAG 4 cut(s) 370, 410, 924, 1146
BstDSI CCRYGG 1 cut(s) 502
BstF5I GGATG 5 cut(s) 86, 661, 816, 1140, 1201
BstFNI CGCG 4 cut(s) 19, 854, 994, 1234
BstHHI GCGC 2 cut(s) 994, 1234
BstKTI GATC 5 cut(s) 192, 216, 893, 957, 1377
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 5 cut(s) 189, 213, 890, 954, 1374
BstMWI GCNNNNNNNGC 1 cut(s) 737
BstNI CCWGG 2 cut(s) 182, 324
BstSCI CCNGG 6 cut(s) 180, 322, 376, 772, 1301, 1624
BstSFI CTRYAG 3 cut(s) 436, 1528, 1554
BstUI CGCG 4 cut(s) 19, 854, 994, 1234
BstV1I GCAGC 4 cut(s) 525, 1540, 1568, 1616
Bsu15I ATCGAT 1 cut(s) 957
BsuRI GGCC 4 cut(s) 70, 185, 1165, 1563
BsuTUI ATCGAT 1 cut(s) 957
BtgI CCRYGG 1 cut(s) 502
BtrI CACGTC 1 cut(s) 631
BtsCI GGATG 5 cut(s) 86, 661, 816, 1140, 1201
BtsIMutI CAGTG 1 cut(s) 921
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 6 cut(s) 7, 594, 598, 852, 1236, 1561
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 2 cut(s) 994, 1234
Cfr13I GGNCC 1 cut(s) 184
ClaI ATCGAT 1 cut(s) 957
CseI GACGC 1 cut(s) 325
Csp6I GTAC 2 cut(s) 310, 831
CviAII CATG 9 cut(s) 171, 503, 521, 899, 1012, 1324, 1425, 1446, 1504
CviQI GTAC 2 cut(s) 310, 831
DdeI CTNAG 4 cut(s) 370, 410, 924, 1146
DpnI GATC 5 cut(s) 191, 215, 892, 956, 1376
DpnII GATC 5 cut(s) 189, 213, 890, 954, 1374
DraI TTTAAA 1 cut(s) 1296
DriI GACNNNNNGTC 1 cut(s) 634
Eam1104I CTCTTC 3 cut(s) 109, 409, 1145
Eam1105I GACNNNNNGTC 1 cut(s) 634
EarI CTCTTC 3 cut(s) 109, 409, 1145
Eco130I CCWWGG 2 cut(s) 502, 1419
Eco32I GATATC 1 cut(s) 905
Eco57I CTGAAG 4 cut(s) 289, 1098, 1252, 1419
Eco88I CYCGRG 1 cut(s) 713
EcoRI GAATTC 1 cut(s) 1185
EcoRII CCWGG 2 cut(s) 180, 322
EcoRV GATATC 1 cut(s) 905
EcoT14I CCWWGG 2 cut(s) 502, 1419
ErhI CCWWGG 2 cut(s) 502, 1419
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 9 cut(s) 174, 506, 524, 902, 1015, 1327, 1428, 1449, 1507
FalI AAGNNNNNCTT 2 cut(s) 1071, 1103
FatI CATG 9 cut(s) 170, 502, 520, 898, 1011, 1323, 1424, 1445, 1503
FauNDI CATATG 2 cut(s) 564, 693
FbaI TGATCA 2 cut(s) 213, 1374
FblI GTMKAC 2 cut(s) 874, 1641
Fnu4HI GCNGC 6 cut(s) 449, 539, 855, 1554, 1557, 1630
FokI GGATG 5 cut(s) 73, 668, 823, 1127, 1208
Fsp4HI GCNGC 6 cut(s) 449, 539, 855, 1554, 1557, 1630
FspBI CTAG 2 cut(s) 597, 666
GlaI GCGC 2 cut(s) 993, 1233
GluI GCNGC 6 cut(s) 449, 539, 855, 1554, 1557, 1630
HaeIII GGCC 4 cut(s) 70, 185, 1165, 1563
HapII CCGG 5 cut(s) 377, 773, 1193, 1303, 1626
HgaI GACGC 1 cut(s) 325
HhaI GCGC 2 cut(s) 994, 1234
Hin1II CATG 9 cut(s) 174, 506, 524, 902, 1015, 1327, 1428, 1449, 1507
Hin6I GCGC 2 cut(s) 992, 1232
HinP1I GCGC 2 cut(s) 992, 1232
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 7 cut(s) 167, 233, 295, 530, 559, 1121, 1415
HpaII CCGG 5 cut(s) 377, 773, 1193, 1303, 1626
HphI GGTGA 5 cut(s) 184, 358, 488, 853, 1597
Hpy166II GTNNAC 4 cut(s) 340, 875, 1642, 1660
Hpy188I TCNGA 6 cut(s) 177, 300, 364, 373, 1497, 1616
Hpy188III TCNNGA 5 cut(s) 164, 259, 1076, 1193, 1378
Hpy8I GTNNAC 4 cut(s) 340, 875, 1642, 1660
HpyAV CCTTC 6 cut(s) 313, 754, 814, 878, 1166, 1611
HpyCH4III ACNGT 2 cut(s) 346, 1471
HpyCH4IV ACGT 3 cut(s) 630, 933, 1332
HpyF10VI GCNNNNNNNGC 1 cut(s) 737
HpyF3I CTNAG 4 cut(s) 370, 410, 924, 1146
HpySE526I ACGT 3 cut(s) 630, 933, 1332
Hsp92II CATG 9 cut(s) 174, 506, 524, 902, 1015, 1327, 1428, 1449, 1507
HspAI GCGC 2 cut(s) 992, 1232
Kpn2I TCCGGA 1 cut(s) 1192
Ksp22I TGATCA 2 cut(s) 213, 1374
Kzo9I GATC 5 cut(s) 189, 213, 890, 954, 1374
LmnI GCTCC 2 cut(s) 50, 430
Lsp1109I GCAGC 4 cut(s) 525, 1540, 1568, 1616
LweI GCATC 1 cut(s) 694
MaeI CTAG 2 cut(s) 597, 666
MaeII ACGT 3 cut(s) 630, 933, 1332
MaeIII GTNAC 1 cut(s) 1465
MalI GATC 5 cut(s) 191, 215, 892, 956, 1376
MboI GATC 5 cut(s) 189, 213, 890, 954, 1374
MfeI CAATTG 1 cut(s) 209
MluCI AATT 5 cut(s) 209, 286, 909, 1185, 1482
MlyI GAGTC 2 cut(s) 539, 1130
MroI TCCGGA 1 cut(s) 1192
MroXI GAANNNNTTC 2 cut(s) 27, 1656
MseI TTAA 6 cut(s) 126, 141, 351, 1247, 1281, 1295
MslI CAYNNNNRTG 1 cut(s) 197
MspI CCGG 5 cut(s) 377, 773, 1193, 1303, 1626
MspR9I CCNGG 6 cut(s) 182, 324, 378, 774, 1303, 1626
MunI CAATTG 1 cut(s) 209
Mva1269I GAATGC 4 cut(s) 649, 742, 917, 1045
MvaI CCWGG 2 cut(s) 182, 324
MvnI CGCG 4 cut(s) 19, 854, 994, 1234
MwoI GCNNNNNNNGC 1 cut(s) 737
NciI CCSGG 4 cut(s) 378, 774, 1303, 1626
NcoI CCATGG 1 cut(s) 502
NdeI CATATG 2 cut(s) 564, 693
NdeII GATC 5 cut(s) 189, 213, 890, 954, 1374
NheI GCTAGC 1 cut(s) 596
NlaIII CATG 9 cut(s) 174, 506, 524, 902, 1015, 1327, 1428, 1449, 1507
NlaIV GGNNCC 1 cut(s) 1509
NspV TTCGAA 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 644
PctI GAATGC 4 cut(s) 649, 742, 917, 1045
PdmI GAANNNNTTC 2 cut(s) 27, 1656
PfeI GAWTC 5 cut(s) 167, 233, 295, 559, 1415
PkrI GCNGC 6 cut(s) 450, 540, 856, 1555, 1558, 1631
PleI GAGTC 2 cut(s) 538, 1129
PpsI GAGTC 2 cut(s) 538, 1129
PshBI ATTAAT 1 cut(s) 1281
Psp1406I AACGTT 1 cut(s) 1332
Psp6I CCWGG 2 cut(s) 180, 322
PspGI CCWGG 2 cut(s) 180, 322
PspN4I GGNNCC 1 cut(s) 1509
PspPI GGNCC 1 cut(s) 184
PstI CTGCAG 1 cut(s) 1558
PstNI CAGNNNCTG 1 cut(s) 181
RsaI GTAC 2 cut(s) 311, 832
RsaNI GTAC 2 cut(s) 310, 831
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 6 cut(s) 126, 141, 351, 1247, 1281, 1295
SatI GCNGC 6 cut(s) 449, 539, 855, 1554, 1557, 1630
Sau3AI GATC 5 cut(s) 189, 213, 890, 954, 1374
Sau96I GGNCC 1 cut(s) 184
ScaI AGTACT 1 cut(s) 832
SchI GAGTC 2 cut(s) 539, 1130
ScrFI CCNGG 6 cut(s) 182, 324, 378, 774, 1303, 1626
SfaNI GCATC 1 cut(s) 694
SfcI CTRYAG 3 cut(s) 436, 1528, 1554
SfuI TTCGAA 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 5 cut(s) 209, 286, 909, 1185, 1482
SsiI CCGC 3 cut(s) 90, 449, 854
SspMI CTAG 2 cut(s) 597, 666
StyD4I CCNGG 6 cut(s) 180, 322, 376, 772, 1301, 1624
StyI CCWWGG 2 cut(s) 502, 1419
TaaI ACNGT 2 cut(s) 346, 1471
TaiI ACGT 3 cut(s) 633, 936, 1335
TaqI TCGA 4 cut(s) 231, 402, 957, 1160
TaqII GACCGA 1 cut(s) 855
TasI AATT 5 cut(s) 209, 286, 909, 1185, 1482
TatI WGTACW 1 cut(s) 830
TauI GCSGC 2 cut(s) 451, 857
TfiI GAWTC 5 cut(s) 167, 233, 295, 559, 1415
Tru1I TTAA 6 cut(s) 126, 141, 351, 1247, 1281, 1295
Tru9I TTAA 6 cut(s) 126, 141, 351, 1247, 1281, 1295
TscAI CASTG 1 cut(s) 928
TseI GCWGC 4 cut(s) 538, 1553, 1556, 1629
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 928
VspI ATTAAT 1 cut(s) 1281
XapI RAATTY 1 cut(s) 1185
XmiI GTMKAC 2 cut(s) 874, 1641
XmnI GAANNNNTTC 2 cut(s) 27, 1656
XspI CTAG 2 cut(s) 597, 666
ZrmI AGTACT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.