Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010850

Physical Location & Seq

Genomic Coordinates Reverse (-)

19353867 .. 19357261

Gene Structure 3395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAGATTGAAGAAGCGAGTCGTGAAAGTGGACATGTTGTGTGCGGATCATGGATTCGTCGCCCGAAGAAAGTAAACTGGGTTCTTATCGCTAAAGCTTCCAAACGCCGTGGCTCATCTGTTTCTTCTCCTGCTCTCCTCAACATCTTCTCTTTTGACCCCATTACTGCTTCTCTTTCCTCCTCTCCTTTGGCAACACACACGCTTAAGGATAGTGATGGTGATCCTGTGGCTGTTTCAGTGCACCCTGGTGGGGATTACTTTGTTTGCTCAACCTCCAAAGGTGGTTGCAAGTTATTTGAGCTTGTCGGAGGAGCAACAGGTATTACGATCTTAGCCAAAGAACTCCTTCCTCTCCAAAATGCTGGACTACAAAAGTGTATGGCCTTCAGCTTTGATGGGTCTAAATTAGCTGTTGGGGGAGTGGATGGATGTCTTAGAATTATGGAGTGGCCAAACCTAAGTGTAATTTTGGATGAGCCAAAGGCACACAAATCCATCCGGGACATGGATTTTAGTCTTGACTCAGAGTTCTTAGCTACAACATCAACTGATGGATCAGCTAGAATATGGAAAGCAGAAGATGGTTTTCCTTTGTCTACTTTGGAACGTAGTGGGGATGAAAATATTGAACTGTGCCGTTTCTCTAAAGACGGAACAAAACCTTTTTTGTTTTGTGCTGCTCAAAGAGGTGATACGCCTATGGTCAATGTTTATGACATTAGTACATGGAAGAAGCTTGGGTTCAAGAAGCTGTCAAGGAAGACTGCATCGACAATGGCAGTGAGCTTGGACGGGAAATATATTGCTTTGGGTGGGAAAGATGGAGATGTATCTGTTGCTGAAGTTAAGACAATGGAAATCTACCACTACAGTAAGAGGCTGCATCTTGGTCAATCCATTGCTTCACTTGAGTTCTGCCCCAGTGAAAGGGTTATGCTGACAACTTCTAGCGAATGGGGAGAGATGGTGACCAAACTCACTGTACCAAAGGAGTGGAAAGAGTGGCAGATATATGCACTGCTGTTTTGCTTGTTCATGGCATCAGTGATAGCTGCATACGTATTCTTCGAGAACTCAGATTCGTTTTGGAAGTTACCAATGGGAAAAGATCAAAAAAGACCAAAGATTAGTCTATTTGGAGGTTCCTCCTCCACGCCTTCTGAGGATCATAGTAGGTGGAACTTGGACCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003400 GO:0003674 GO:0005085 GO:0005090 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006888 GO:0006950 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0009267 GO:0009306 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015031 GO:0015698 GO:0015833 GO:0016020 GO:0016021 GO:0016036 GO:0016192 GO:0019899 GO:0030176 GO:0030234 GO:0030695 GO:0031224 GO:0031227 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032386 GO:0032879 GO:0032940 GO:0033036 GO:0033043 GO:0033554 GO:0042175 GO:0042594 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043547 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048209 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0060589 GO:0060627 GO:0060628 GO:0065007 GO:0065009 GO:0071496 GO:0071702 GO:0071705 GO:0071944 GO:0090113 GO:0098772 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

WD40

Protein Analysis

398

Amino Acids

43.77

Weight (kDa)

7.03

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	65 - 259	9e-12	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	67 - 220	1.3e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	69 - 280	3e-07	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	125 - 220	2.7e-10	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	126 - 314	2.6e-16	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	127 - 319	1.3e-15	WDR5 beta-propeller domain
WDR55	PF24796	136 - 319	3.5e-07	WDR55
WD40_CDC20-Fz	PF24807	158 - 318	6.8e-08	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	161 - 318	8.2e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	165 - 319	3.4e-15	THOC3 beta-propeller domain
EIF3I	PF24805	166 - 324	3.3e-11	EIF3I
Beta-prop_EML_2	PF23414	230 - 317	2.7e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52190
fragaria_vesca	FvH4_7g06890 FvH4_7g06890
malus_domestica	MD02G1241000.v1.1 MD07G1075600.v1.1
prunus_persica	Prupe.2G096500_v2.0.a1
pyrus_communis	pycom02g20620 pycom07g05960
rosa_chinensis	RchiOBHm_Chr1g0336681 RchiOBHm_Chr1g0336701 RchiOBHm_Chr1g0336731
rosa_laevigata	RLG00000029338
rosa_multiflora	Rmu_sc0000907.1_g000011 Rmu_sc0011778.1_g000011 Rmu_sc0042619.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315360
rosa_rugosa	Rorug01G0127500
rosa_samantha	Rh1CG140000 Rh1DG155600
rosa_wichuraiana	Rw1G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	599
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	4 cut(s)	55, 218, 565, 1176
AcoI	YGGCCR	1 cut(s)	452
AcuI	CTGAAG	2 cut(s)	373, 864
AfaI	GTAC	2 cut(s)	727, 987
AfiI	CCNNNNNNNGG	3 cut(s)	253, 508, 930
AflII	CTTAAG	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	3 cut(s)	11, 632, 748
AjnI	CCWGG	1 cut(s)	247
AleI	CACNNNNGTG	1 cut(s)	249
Alw21I	GWGCWC	1 cut(s)	246
Alw44I	GTGCAC	1 cut(s)	242
AlwI	GGATC	4 cut(s)	55, 218, 565, 1176
AoxI	GGCC	2 cut(s)	384, 452
ApaLI	GTGCAC	1 cut(s)	242
ApeKI	GCWGC	3 cut(s)	680, 883, 1055
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	1189
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	3 cut(s)	233, 704, 982
AvaII	GGWCC	1 cut(s)	1189
BaeGI	GKGCMC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	770
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	667, 870, 1042
BccI	CCATC	8 cut(s)	212, 392, 422, 506, 548, 578, 818, 961
BceAI	ACGGC	2 cut(s)	93, 624
BciT130I	CCWGG	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	503
BfaI	CTAG	2 cut(s)	564, 951
BfmI	CTRYAG	2 cut(s)	871, 1193
BfrI	CTTAAG	1 cut(s)	206
BisI	GCNGC	3 cut(s)	681, 884, 1056
BlsI	GCNGC	3 cut(s)	682, 885, 1057
Bme1390I	CCNGG	2 cut(s)	249, 503
Bme18I	GGWCC	1 cut(s)	1189
BmgT120I	GGNCC	1 cut(s)	1189
BmiI	GGNNCC	1 cut(s)	1147
BmrFI	CCNGG	2 cut(s)	249, 503
BmrI	ACTGGG	2 cut(s)	88, 918
BmsI	GCATC	3 cut(s)	779, 895, 1052
BmuI	ACTGGG	2 cut(s)	88, 918
BpiI	GAAGAC	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	932
BpuMI	CCSGG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	1063
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	109, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	954, 984
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 508, 930
Bse1I	ACTGG	2 cut(s)	83, 924
Bse3DI	GCAATG	1 cut(s)	900
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	109, 247
BseGI	GGATG	5 cut(s)	433, 437, 481, 498, 625
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	253, 508, 930
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	3 cut(s)	540, 1092, 1155
BseNI	ACTGG	2 cut(s)	83, 924
BseRI	GAGGAG	4 cut(s)	128, 172, 327, 1141
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	667, 870, 1042
BshFI	GGCC	2 cut(s)	386, 454
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	3 cut(s)	253, 508, 930
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	2 cut(s)	386, 454
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	6 cut(s)	47, 223, 330, 557, 1111, 1168
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	386, 454
BspCNI	CTCAG	3 cut(s)	539, 1091, 1156
BspLI	GGNNCC	1 cut(s)	1147
BspPI	GGATC	4 cut(s)	55, 218, 565, 1176
BspTI	CTTAAG	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	900
BsrI	ACTGG	2 cut(s)	83, 924
BssECI	CCNNGG	2 cut(s)	109, 247
BssMI	GATC	6 cut(s)	47, 223, 330, 557, 1111, 1168
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	636, 875, 985
BstAFI	CTTAAG	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	1063
BstDEI	CTNAG	7 cut(s)	334, 437, 461, 526, 535, 1078, 1164
BstDSI	CCRYGG	1 cut(s)	109
BstEII	GGTNACC	1 cut(s)	970
BstF5I	GGATG	5 cut(s)	433, 437, 481, 498, 625
BstKTI	GATC	6 cut(s)	50, 226, 333, 560, 1114, 1171
BstMBI	GATC	6 cut(s)	47, 223, 330, 557, 1111, 1168
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	38
BstPI	GGTNACC	1 cut(s)	970
BstSCI	CCNGG	2 cut(s)	247, 501
BstSFI	CTRYAG	2 cut(s)	871, 1193
BstSLI	GKGCMC	1 cut(s)	246
BstSNI	TACGTA	1 cut(s)	1063
BstV1I	GCAGC	3 cut(s)	667, 870, 1042
BstV2I	GAAGAC	1 cut(s)	770
BstXI	CCANNNNNNTGG	2 cut(s)	365, 996
BsuRI	GGCC	2 cut(s)	386, 454
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	5 cut(s)	433, 437, 481, 498, 625
BtsI	GCAGTG	2 cut(s)	789, 1019
BtsIMutI	CAGTG	6 cut(s)	246, 789, 931, 981, 1019, 1053
Cfr13I	GGNCC	1 cut(s)	1189
Csp6I	GTAC	2 cut(s)	726, 986
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviAII	CATG	5 cut(s)	35, 51, 508, 729, 1039
CviQI	GTAC	2 cut(s)	726, 986
DdeI	CTNAG	7 cut(s)	334, 437, 461, 526, 535, 1078, 1164
DpnI	GATC	6 cut(s)	49, 225, 332, 559, 1113, 1170
DpnII	GATC	6 cut(s)	47, 223, 330, 557, 1111, 1168
EaeI	YGGCCR	1 cut(s)	452
Eco105I	TACGTA	1 cut(s)	1063
Eco47I	GGWCC	1 cut(s)	1189
Eco57I	CTGAAG	2 cut(s)	373, 864
Eco91I	GGTNACC	1 cut(s)	970
EcoO65I	GGTNACC	1 cut(s)	970
EcoRII	CCWGG	1 cut(s)	247
FaeI	CATG	5 cut(s)	38, 54, 511, 732, 1042
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	5 cut(s)	34, 50, 507, 728, 1038
FblI	GTMKAC	1 cut(s)	599
Fnu4HI	GCNGC	3 cut(s)	681, 884, 1056
FokI	GGATG	5 cut(s)	440, 444, 485, 488, 632
Fsp4HI	GCNGC	3 cut(s)	681, 884, 1056
FspBI	CTAG	2 cut(s)	564, 951
GluI	GCNGC	3 cut(s)	681, 884, 1056
HaeIII	GGCC	2 cut(s)	386, 454
HapII	CCGG	1 cut(s)	502
Hin1II	CATG	5 cut(s)	38, 54, 511, 732, 1042
HindIII	AAGCTT	2 cut(s)	96, 737
HinfI	GANTC	4 cut(s)	19, 55, 524, 1082
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	3 cut(s)	233, 704, 982
Hpy166II	GTNNAC	4 cut(s)	32, 76, 244, 600
Hpy188I	TCNGA	4 cut(s)	311, 529, 1081, 1165
Hpy188III	TCNNGA	4 cut(s)	23, 521, 748, 1072
Hpy8I	GTNNAC	4 cut(s)	32, 76, 244, 600
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	3 cut(s)	359, 397, 1170
HpyCH4III	ACNGT	3 cut(s)	636, 875, 985
HpyCH4IV	ACGT	2 cut(s)	610, 1062
HpyCH4V	TGCA	6 cut(s)	244, 291, 770, 886, 1019, 1058
HpyF3I	CTNAG	7 cut(s)	334, 437, 461, 526, 535, 1078, 1164
HpySE526I	ACGT	2 cut(s)	610, 1062
Hsp92II	CATG	5 cut(s)	38, 54, 511, 732, 1042
Kzo9I	GATC	6 cut(s)	47, 223, 330, 557, 1111, 1168
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	9 cut(s)	64, 144, 234, 240, 261, 306, 351, 515, 937
Lsp1109I	GCAGC	3 cut(s)	667, 870, 1042
LweI	GCATC	3 cut(s)	779, 895, 1052
MaeI	CTAG	2 cut(s)	564, 951
MaeII	ACGT	2 cut(s)	610, 1062
MaeIII	GTNAC	2 cut(s)	970, 1095
MalI	GATC	6 cut(s)	49, 225, 332, 559, 1113, 1170
MboI	GATC	6 cut(s)	47, 223, 330, 557, 1111, 1168
MboII	GAAGA	8 cut(s)	23, 79, 117, 139, 593, 745, 775, 1060
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	454
MluCI	AATT	3 cut(s)	407, 441, 468
MluNI	TGGCCA	1 cut(s)	454
MlyI	GAGTC	2 cut(s)	28, 518
MmeI	TCCRAC	1 cut(s)	289
Mox20I	TGGCCA	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	454
MseI	TTAA	2 cut(s)	207, 849
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	454
MspCI	CTTAAG	1 cut(s)	206
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	249, 503
MvaI	CCWGG	1 cut(s)	249
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	6 cut(s)	47, 223, 330, 557, 1111, 1168
NlaIII	CATG	5 cut(s)	38, 54, 511, 732, 1042
NlaIV	GGNNCC	1 cut(s)	1147
NmuCI	GTSAC	1 cut(s)	970
NspI	RCATGY	1 cut(s)	38
OliI	CACNNNNGTG	1 cut(s)	249
PciI	ACATGT	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	1068
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	55, 1082
PfoI	TCCNGGA	1 cut(s)	501
PkrI	GCNGC	3 cut(s)	682, 885, 1057
PleI	GAGTC	2 cut(s)	27, 518
PpsI	GAGTC	2 cut(s)	27, 518
Ppu21I	YACGTR	1 cut(s)	1063
PscI	ACATGT	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	247
PspEI	GGTNACC	1 cut(s)	970
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	1147
PspPI	GGNCC	1 cut(s)	1189
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
RsaI	GTAC	2 cut(s)	727, 987
RsaNI	GTAC	2 cut(s)	726, 986
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	207, 849
SatI	GCNGC	3 cut(s)	681, 884, 1056
Sau3AI	GATC	6 cut(s)	47, 223, 330, 557, 1111, 1168
Sau96I	GGNCC	1 cut(s)	1189
SchI	GAGTC	2 cut(s)	28, 518
ScrFI	CCNGG	2 cut(s)	249, 503
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	3 cut(s)	779, 895, 1052
SfcI	CTRYAG	2 cut(s)	871, 1193
SinI	GGWCC	1 cut(s)	1189
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	206, 911
SmoI	CTYRAG	2 cut(s)	206, 911
SnaBI	TACGTA	1 cut(s)	1063
Sse9I	AATT	3 cut(s)	407, 441, 468
SsiI	CCGC	1 cut(s)	45
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	2 cut(s)	564, 951
StyD4I	CCNGG	2 cut(s)	247, 501
TaaI	ACNGT	3 cut(s)	636, 875, 985
TaiI	ACGT	2 cut(s)	613, 1065
TaqI	TCGA	2 cut(s)	773, 1071
TasI	AATT	3 cut(s)	407, 441, 468
TatI	WGTACW	1 cut(s)	725
TfiI	GAWTC	2 cut(s)	55, 1082
Tru1I	TTAA	2 cut(s)	207, 849
Tru9I	TTAA	2 cut(s)	207, 849
TscAI	CASTG	6 cut(s)	246, 789, 931, 988, 1026, 1053
TseFI	GTSAC	1 cut(s)	970
TseI	GCWGC	3 cut(s)	680, 883, 1055
Tsp45I	GTSAC	1 cut(s)	970
TspDTI	ATGAA	2 cut(s)	636, 1027
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	6 cut(s)	246, 789, 931, 988, 1026, 1053
Vha464I	CTTAAG	1 cut(s)	206
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	1189
XceI	RCATGY	1 cut(s)	38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	564, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.